Contig 010298:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043E06Sequence641010298 (2)gb|KHG25207.1|78.2DUF21 domain-containing, chloroplastic -like protein [Gossypium arboreum]580019164gb|KHG25207.1|77.8DUF21 domain-containing, chloroplastic -like protein [Gossypium arboreum]
JMSF011C04Sequence323010298 (2)ref|XP_006355733.1|2e-40PREDICTED: probable prefoldin subunit 3-like [Solanum tuberosum]154019245

Alignment

This contig is upended


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JMFF043E06+                              TATAAATCCTTGAGAAACATTTCATCTCATCTGGACTGCCT
                      ____________________________________________________________
consensus                                TATAAATCCTTGAGAAACATTTCATCTCATCTGGACTGCCT
 
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JMFF043E06+           GGTGTTGTCTGATCTCCATAACTGAACTCCTCGGGCATTTTAATCTCGAGTTCATCAGAT
                      ____________________________________________________________
consensus             GGTGTTGTCTGATCTCCATAACTGAACTCCTCGGGCATTTTAATCTCGAGTTCATCAGAT
 
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JMFF043E06+           AGCTGATCAATGGATGTATTAGCATCCACATCAAAGATTCCCTCAGCCCTGAGAACAATG
                      ____________________________________________________________
consensus             AGCTGATCAATGGATGTATTAGCATCCACATCAAAGATTCCCTCAGCCCTGAGAACAATG
 
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JMFF043E06+           TAGCCAGTTTTCTTCTGCATCTCTTCGGATTCATTGCTCCCCTTCATGCTCTTCTCAAGG
                      ____________________________________________________________
consensus             TAGCCAGTTTTCTTCTGCATCTCTTCGGATTCATTGCTCCCCTTCATGCTCTTCTCAAGG
 
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JMSF011C04+                                                        CACGAACGCCGCCGC
JMFF043E06+           TCCTCAATCCTCTTCTCCATGAACTCAATATCCTGAACAGTTCTTCACGAACACCGCCGC
                      ____________________________________________________________
consensus             TCCTCAATCCTCTTCTCCATGAACTCAATATCCTGAACAGTTCTTCACGAACGCCGCCGC
 
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JMSF011C04+           CGGAATTCCTCTCCTCTCCGTCAATCCGGAGGTTGATGAAGAAGTCGCAACCTCCGCCGC
JMFF043E06+           CGAAATTCCTCTCCTCTCCGTTAATCCGGAGGTTGATGATGAAGCCGCAACCAACGCCAC
                      ____________________________________________________________
consensus             CGGAATTCCTCTCCTCTCCGTTAATCCGGAGGTTGATGATGAAGTCGCAACCTCCGCCGC
 
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JMSF011C04+           CATCTGCAA                                                   
JMFF043E06+           CATCTGCAAGTGGTCTTGTGCTCTGAGCTTTCTTCTTCTTTCTTCTTCGATGGAGCGGCG
                      ____________________________________________________________
consensus             CATCTGCAAGTGGTCTTGTGCTCTGAGCTTTCTTCTTCTTTCTTCTTCGATGGAGCGGCG
 
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JMFF043E06+           GTCGTGGGTGTCTGAAGCAGGGGCGGAGACGTCGGCTATGGCGGTGGTAGCAGTGGTGGC
                      ____________________________________________________________
consensus             GTCGTGGGTGTCTGAAGCAGGGGCGGAGACGTCGGCTATGGCGGTGGTAGCAGTGGTGGC
 
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JMFF043E06+           GTCGGCAGATCAGCGCTGGAGGCGGTGGCTGCGTCGAGGTTGTCACGGTGTGGTGCGCAT
                      ____________________________________________________________
consensus             GTCGGCAGATCAGCGCTGGAGGCGGTGGCTGCGTCGAGGTTGTCACGGTGTGGTGCGCAT
 
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JMFF043E06+           CAGCAGATCGTCGTCACGGTGGAGGTTGTGAGGCCAACGGCGTGGTGGCGGTAGGTGTTG
                      ____________________________________________________________
consensus             CAGCAGATCGTCGTCACGGTGGAGGTTGTGAGGCCAACGGCGTGGTGGCGGTAGGTGTTG
 
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JMFF043E06+           TGGCGATGAGACGATCGAAGCAGATGGCGGATGAAGATTTTAGATCTGAGATGCGAATTT
                      ____________________________________________________________
consensus             TGGCGATGAGACGATCGAAGCAGATGGCGGATGAAGATTTTAGATCTGAGATGCGAATTT