Contig 010297:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042H24Sequence622010297 (2)ref|XP_002308266.1|3e-38hypothetical protein POPTR_0006s14650g [Populus trichocarpa] gb|EEE91789.1| hypo544010297 (2)ref|XP_002308266.1|3e-23hypothetical protein POPTR_0006s14650g [Populus trichocarpa] gb|EEE91789.1| hypo

Alignment

This contig is upended


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rJMFF042H24- ACCCTGGAGAGTTTTTTTTTTTTTTTTGG
                      ____________________________________________________________
consensus ACCCTGGAGAGTTTTTTTTTTTTTTTTGG
 
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rJMFF042H24- AAAAATTTTCTTTGATATTATCCACTTCACATCGAACTACACCAAACTCGAATGATTGGT
                      ____________________________________________________________
consensus AAAAATTTTCTTTGATATTATCCACTTCACATCGAACTACACCAAACTCGAATGATTGGT
 
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rJMFF042H24- CGGGTTACTGTACAAGAATGGTATCATTTTCTACTCACAAAAAAAAAAAAAAAAAGTTGA
JMFF042H24+ AAAAAAAAAAAAAAAAAGTTGA
                      ____________________________________________________________
consensus CGGGTTACTGTACAAGAATGGTATCATTTTCTACTCACAAAAAAAAAAAAAAAAAGTTGA
 
. : . : . : . : . : . :
rJMFF042H24- AGAAGAAGAAGAAAGTTTACAAGTATGGTAAAATTAAACTATTGAAGAAGCATTGTTTGG
JMFF042H24+ AGAAGAAGAAGAAAGTTTACAAGTATGGTAAAATTAAACTATTGAAGAAGCATTGTTTGG
                      ____________________________________________________________
consensus AGAAGAAGAAGAAAGTTTACAAGTATGGTAAAATTAAACTATTGAAGAAGCATTGTTTGG
 
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rJMFF042H24- GACTATTAATCCTTCCTGAGATGTATTCCCCTTAAGGGGGCAGTCCATGTGAGAGTAGAG
JMFF042H24+ GACTATTAATCCTTCCTGAGATGTATTCCCCTTAAGGGGGCAGTCCATGTGAGAGTAGAG
                      ____________________________________________________________
consensus GACTATTAATCCTTCCTGAGATGTATTCCCCTTAAGGGGGCAGTCCATGTGAGAGTAGAG
 
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rJMFF042H24- CCACATGTCAATACAAGGAGCGTGAAAAGAGTGGTTGCATTTGGGAAGTCGCCGGACCTC
JMFF042H24+ CCACATGTCAATACAAGGAGCGTGAAAAGAGTGGTTGCATTTGGGAAGTCGCCGGACCTC
                      ____________________________________________________________
consensus CCACATGTCAATACAAGGAGCGTGAAAAGAGTGGTTGCATTTGGGAAGTCGCCGGACCTC
 
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rJMFF042H24- CTCGCCGTCCTCGAACGCCGACAAGCAGACAGCACACTCGTCGACCTCGACGCCCTCATT
JMFF042H24+ CTCGCCGTCCTCGAACGCCGACAAGCAGACAGCACACTCGTCGACCTCGACGCCCTCATT
                      ____________________________________________________________
consensus CTCGCCGTCCTCGAACGCCGACAAGCAGACAGCACACTCGTCGACCTCGACGCCCTCATT
 
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rJMFF042H24- CTTGTACCGGAAACTGGACACTGCTAGGTTGAGGTTGATGCTGCGGCTGTCGGAGCTCCG
JMFF042H24+ CTTGTACCGGAAACTGGACACTGCTAGGTTGAGGTTGATGCTGCGGCTGTCGGAGCTCCG
                      ____________________________________________________________
consensus CTTGTACCGGAAACTGGACACTGCTAGGTTGAGGTTGATGCTGCGGCTGTCGGAGCTCCG
 
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rJMFF042H24- GAAGCTGACGAAGCTGGTGCTGTCGCCCATCCTCAGATTCCTCAGCCGCGTCCGCCGCCG
JMFF042H24+ GAAGCTGACGAAGCTGGTGCTGTCGCCCATCCTCAGATTCCTCAGCCGCGTCCGCCGCCG
                      ____________________________________________________________
consensus GAAGCTGACGAAGCTGGTGCTGTCGCCCATCCTCAGATTCCTCAGCCGCGTCCGCCGCCG
 
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rJMFF042H24- GCTCTCGGCGCACCACCGTATGATGAGGAGGTTGT
JMFF042H24+ GCTCTCGGCGCACCACCGTATGATGAGGAGGTTGTAGAGCGCGAGGACGATGGCGGCGGT
                      ____________________________________________________________
consensus GCTCTCGGCGCACCACCGTATGATGAGGAGGTTGTAGAGCGCGAGGACGATGGCGGCGGT
 
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JMFF042H24+ GCCGATGACGACGAGGCCGTAGTATAACATGGGGAGATTTGATTTGGGATGAGAAGGCGA
                      ____________________________________________________________
consensus GCCGATGACGACGAGGCCGTAGTATAACATGGGGAGATTTGATTTGGGATGAGAAGGCGA
 
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JMFF042H24+ TGGGGTGGGAGGAGGAGGATGAGAAGTAGAGTTGGTTGGTGAAGCTGCCATAGCCTTGCC
                      ____________________________________________________________
consensus TGGGGTGGGAGGAGGAGGATGAGAAGTAGAGTTGGTTGGTGAAGCTGCCATAGCCTTGCC
 
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JMFF042H24+ CTTGATGAATGATGAGTGATGACAAATATAATTTGTCACGTCAAAATGTTTATCATTTCC
                      ____________________________________________________________
consensus CTTGATGAATGATGAGTGATGACAAATATAATTTGTCACGTCAAAATGTTTATCATTTCC