Contig 010288:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019E20Sequence570010288 (4)gb|KDO52247.1|1e-56hypothetical protein CISIN_1g0088442mg, partial [Citrus sinensis]668008221 (5)emb|CDP07224.1|2e-50unnamed protein product [Coffea canephora]
JMFF021H18Sequence581010288 (4)gb|KDO52247.1|2e-57hypothetical protein CISIN_1g0088442mg, partial [Citrus sinensis]727008221 (5)emb|CDP07224.1|5e-55unnamed protein product [Coffea canephora]
JMFF027H18Sequence512010288 (4)ref|XP_006445680.1|3e-41hypothetical protein CICLE_v10014800mg [Citrus clementina] ref|XP_006485525.1| P659008221 (5)ref|XP_009609900.1|1e-50PREDICTED: retinoblastoma-binding protein 5 isoform X3 [Nicotiana tomentosiform
JMFF041D06Sequence631010288 (4)ref|XP_002300221.2|1e-63hypothetical protein POPTR_0001s31290g [Populus trichocarpa] gb|EEE85026.2| hypo629008221 (5)ref|XP_009609900.1|9e-52PREDICTED: retinoblastoma-binding protein 5 isoform X3 [Nicotiana tomentosiform

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF041D06+ TCTGTTGAAGGGTCATGTGTGTTATTNTCTC
                      ____________________________________________________________
consensus TCTGTTGAAGGGTCATGTGTGTTATTNTCTC
 
. : . : . : . : . : . :
JMFF021H18+ CCAAAGTGTTAAAGATTTATCTGCGGCAGATACAAGTATGCGGTG
JMFF019E20+ CCAAAGTGTTAAAGATTTATCTGCGGCAGATACAAGTATGCGGTG
JMFF041D06+ TCCATTGACAACATCCCAAAGTGTTAAAGATTTATCTGCGGCAGATACAAGTATGCGGTG
                      ____________________________________________________________
consensus TCCATTGACAACATCCCAAAGTGTTAAAGATTTATCTGCGGCAGATACAAGTATGCGGTG
 
. : . : . : . : . : . :
JMFF021H18+ ACCATACTTTGACCAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
JMFF019E20+ ACCATACTTTGACCAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
JMFF027H18+ CAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
JMFF041D06+ ACCATACTTTGACCAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
                      ____________________________________________________________
consensus ACCATACTTTGACCAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
 
. : . : . : . : . : . :
JMFF021H18+ TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
JMFF019E20+ TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
JMFF027H18+ TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
JMFF041D06+ TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
                      ____________________________________________________________
consensus TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
 
. : . : . : . : . : . :
JMFF021H18+ AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
JMFF019E20+ AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
JMFF027H18+ AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
JMFF041D06+ AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
                      ____________________________________________________________
consensus AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
 
. : . : . : . : . : . :
JMFF021H18+ CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
JMFF019E20+ CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
JMFF027H18+ CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
JMFF041D06+ CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
                      ____________________________________________________________
consensus CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
 
. : . : . : . : . : . :
JMFF021H18+ GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
JMFF019E20+ GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
JMFF027H18+ GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
JMFF041D06+ GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
                      ____________________________________________________________
consensus GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
 
. : . : . : . : . : . :
JMFF021H18+ TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
JMFF019E20+ TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
JMFF027H18+ TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
JMFF041D06+ TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
                      ____________________________________________________________
consensus TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
 
. : . : . : . : . : . :
JMFF021H18+ TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
JMFF019E20+ TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
JMFF027H18+ TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
JMFF041D06+ TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
                      ____________________________________________________________
consensus TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
 
. : . : . : . : . : . :
JMFF021H18+ GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
JMFF019E20+ GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
JMFF027H18+ GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
JMFF041D06+ GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
                      ____________________________________________________________
consensus GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
 
. : . : . : . : . : . :
JMFF021H18+ GTTTGAATGGGAAAAAAGTGCAAAAAATTCTCAGGGGATTTTGGGTCTACAAT
JMFF019E20+ GTTTGAATGGGAAAAAAGTGCAAAAGATTCTCAGGGGATTTTGGG
JMFF027H18+ GTTTGAATGGGAAAAAAGTGCAAAAAATTCTCAGGGGATTTTGGG
JMFF041D06+ GTTTGAATGGGAAAAAAGTGCAAAAAATTCTCAGGGGATTTTGGGTCTACAATCGGTTCT
                      ____________________________________________________________
consensus GTTTGAATGGGAAAAAAGTGCAAAAAATTCTCAGGGGATTTTGGGTCTACAATCGGTTCT