| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019E20 | Sequence | 570 | 010288 (4) | gb|KDO52247.1| | 1e-56 | hypothetical protein CISIN_1g0088442mg, partial [Citrus sinensis] | 668 | 008221 (5) | emb|CDP07224.1| | 2e-50 | unnamed protein product [Coffea canephora] |
| JMFF021H18 | Sequence | 581 | 010288 (4) | gb|KDO52247.1| | 2e-57 | hypothetical protein CISIN_1g0088442mg, partial [Citrus sinensis] | 727 | 008221 (5) | emb|CDP07224.1| | 5e-55 | unnamed protein product [Coffea canephora] |
| JMFF027H18 | Sequence | 512 | 010288 (4) | ref|XP_006445680.1| | 3e-41 | hypothetical protein CICLE_v10014800mg [Citrus clementina] ref|XP_006485525.1| P | 659 | 008221 (5) | ref|XP_009609900.1| | 1e-50 | PREDICTED: retinoblastoma-binding protein 5 isoform X3 [Nicotiana tomentosiform |
| JMFF041D06 | Sequence | 631 | 010288 (4) | ref|XP_002300221.2| | 1e-63 | hypothetical protein POPTR_0001s31290g [Populus trichocarpa] gb|EEE85026.2| hypo | 629 | 008221 (5) | ref|XP_009609900.1| | 9e-52 | PREDICTED: retinoblastoma-binding protein 5 isoform X3 [Nicotiana tomentosiform |
This contig is upended
. : . : . : . : . : . :
JMFF041D06+ TCTGTTGAAGGGTCATGTGTGTTATTNTCTC
____________________________________________________________
consensus TCTGTTGAAGGGTCATGTGTGTTATTNTCTC
. : . : . : . : . : . :
JMFF021H18+ CCAAAGTGTTAAAGATTTATCTGCGGCAGATACAAGTATGCGGTG
JMFF019E20+ CCAAAGTGTTAAAGATTTATCTGCGGCAGATACAAGTATGCGGTG
JMFF041D06+ TCCATTGACAACATCCCAAAGTGTTAAAGATTTATCTGCGGCAGATACAAGTATGCGGTG
____________________________________________________________
consensus TCCATTGACAACATCCCAAAGTGTTAAAGATTTATCTGCGGCAGATACAAGTATGCGGTG
. : . : . : . : . : . :
JMFF021H18+ ACCATACTTTGACCAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
JMFF019E20+ ACCATACTTTGACCAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
JMFF027H18+ CAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
JMFF041D06+ ACCATACTTTGACCAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
____________________________________________________________
consensus ACCATACTTTGACCAACATACACTAGTGATGGCAGCAACACAGTCCTTATCTCTCAATTC
. : . : . : . : . : . :
JMFF021H18+ TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
JMFF019E20+ TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
JMFF027H18+ TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
JMFF041D06+ TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
____________________________________________________________
consensus TTTAGAGATTCCTCTGGTCTCAAAATCCCAGATAATGCAGCTTCCATCAGAGCATCCAGC
. : . : . : . : . : . :
JMFF021H18+ AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
JMFF019E20+ AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
JMFF027H18+ AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
JMFF041D06+ AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
____________________________________________________________
consensus AGCAAGAAGAGTTCCCCGACGATTAAAGGCAATGCATTTCATAACCCCATGCTCCAAATA
. : . : . : . : . : . :
JMFF021H18+ CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
JMFF019E20+ CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
JMFF027H18+ CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
JMFF041D06+ CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
____________________________________________________________
consensus CTCTTCTATCACCTCCGGAAAATCCCCCTGCAATGGATCTATGATTGGGGCATTCATGGT
. : . : . : . : . : . :
JMFF021H18+ GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
JMFF019E20+ GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
JMFF027H18+ GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
JMFF041D06+ GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
____________________________________________________________
consensus GCAACATTAAAGCTATGAAAAAACTTCACGAATCAAATGCTCCTTGCATCCGCATGGAGT
. : . : . : . : . : . :
JMFF021H18+ TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
JMFF019E20+ TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
JMFF027H18+ TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
JMFF041D06+ TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
____________________________________________________________
consensus TCAAACTTGTAATTTAGGAGAAGCCAAATGTTCAACTGAATAATTGAAAATTTCTCGGTA
. : . : . : . : . : . :
JMFF021H18+ TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
JMFF019E20+ TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
JMFF027H18+ TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
JMFF041D06+ TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
____________________________________________________________
consensus TATGCATATACACGAAGAAGACACAGAACTTATCAGAGGAAAGAAACCCCCCAAAAAATT
. : . : . : . : . : . :
JMFF021H18+ GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
JMFF019E20+ GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
JMFF027H18+ GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
JMFF041D06+ GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
____________________________________________________________
consensus GAAATTTCTTTTCACCGGCGACCGTAGAATGAGAAGATTTCACCGGCGACGAGCTGTGGG
. : . : . : . : . : . :
JMFF021H18+ GTTTGAATGGGAAAAAAGTGCAAAAAATTCTCAGGGGATTTTGGGTCTACAAT
JMFF019E20+ GTTTGAATGGGAAAAAAGTGCAAAAGATTCTCAGGGGATTTTGGG
JMFF027H18+ GTTTGAATGGGAAAAAAGTGCAAAAAATTCTCAGGGGATTTTGGG
JMFF041D06+ GTTTGAATGGGAAAAAAGTGCAAAAAATTCTCAGGGGATTTTGGGTCTACAATCGGTTCT
____________________________________________________________
consensus GTTTGAATGGGAAAAAAGTGCAAAAAATTCTCAGGGGATTTTGGGTCTACAATCGGTTCT