Contig 010285:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040K11Sequence579010285 (3)ref|XP_009797474.1|7e-26PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Nicotiana sylvest694008612 (3)ref|XP_004506769.1|1e-84PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Cicer arietinum]
JMSF002L15Sequence299010285 (3)ref|XP_009594369.1|1e-07PREDICTED: omega-3 fatty acid desaturase, chloroplastic [Nicotiana tomentosifor665008612 (3)emb|CDP14009.1|1e-70unnamed protein product [Coffea canephora]
JMSF040F08Sequence628010285 (3)ref|XP_009797474.1|5e-44PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Nicotiana sylvest777008612 (3)emb|CDP14009.1|1e-77unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF040F08+ AATCCAAACACAGCCACAACATCCCTAACCACATAGCTCATGGACTTCCATGGGTCC
                      ____________________________________________________________
consensus AATCCAAACACAGCCACAACATCCCTAACCACATAGCTCATGGACTTCCATGGGTCC
 
. : . : . : . : . : . :
JMSF040F08+ TTAACCCAGCAATGTTTAGGAATTGCTGCTTTAATGTCAGACAGCTTGAAGGGTGGGGGT
JMFF040K11+ ATTGCTGCTTTAATGTCAGACAGCTTGAAGGGTGGGGGT
                      ____________________________________________________________
consensus TTAACCCAGCAATGTTTAGGAATTGCTGCTTTAATGTCAGACAGCTTGAAGGGTGGGGGT
 
. : . : . : . : . : . :
JMSF040F08+ GCCCCAGGATCAAACCCTTCAACTTCAACTTCTTCTTNTTCATCTTTCCCAATACTCATT
JMFF040K11+ GCCCCAGGATCAAACCCTTCAACTTCAACTTCTTCTTCTTCATCTTTCCCAATACTCATT
                      ____________________________________________________________
consensus GCCCCAGGATCAAACCCTTCAACTTCAACTTCTTCTTCTTCATCTTTCCCAATACTCATT
 
. : . : . : . : . : . :
JMSF040F08+ CCCTCCCTCTCTTCTTCACTCAGCAATGGAGCCCTCACTGGTGCGCTCACCCTCAATGCC
JMFF040K11+ CCCTCCCTCTCTTCTTCACTCAGCAATGGAGCCCTCACTGGTGCGCTCACCCTCAATGCC
                      ____________________________________________________________
consensus CCCTCCCTCTCTTCTTCACTCAGCAATGGAGCCCTCACTGGTGCGCTCACCCTCAATGCC
 
. : . : . : . : . : . :
JMSF040F08+ CAGTTCCTCTCTTTAATCCCCAGCAATGAAAACGAAGAGCCACCAAGATCTGTTCCCAAA
JMSF002L15+ AAAACGAAGAGCCACCAAGATCTGTTCCCAAA
JMFF040K11+ CAGTTCCTCTCTTTAATCCCCAGCAATGAAAACGAAGAGCCACCAAGATCTGTTCCCAAA
                      ____________________________________________________________
consensus CAGTTCCTCTCTTTAATCCCCAGCAATGAAAACGAAGAGCCACCAAGATCTGTTCCCAAA
 
. : . : . : . : . : . :
JMSF040F08+ GCTTTCAGCTTTGGTAAGCTGAGAGAATGGGTAGAAGCTGAAACAGCCCTAGGTTTTGGA
JMSF002L15+ GCTTTCAGCTTTGGTAAGCTGAGAGAATGGGTAGAAGCTGAAACAGCCCTAGGTTTTGGA
JMFF040K11+ GCTTTCAGCTTTGGTAAGCTGAGAGAATGGGTAGAAGCTGAAACAGCCCTAGGTTTTGGA
                      ____________________________________________________________
consensus GCTTTCAGCTTTGGTAAGCTGAGAGAATGGGTAGAAGCTGAAACAGCCCTAGGTTTTGGA
 
. : . : . : . : . : . :
JMSF040F08+ AAGACCCGTGGGAGTGGCCTAACACCACATTCTGATAACACCCAACTCGCCATTACAGTG
JMSF002L15+ AAGACCCGTGGGAGTGGCCTAACACCACATTCTGATAACACCCAACTCGCCATTACAGTG
JMFF040K11+ AAGACCCGTGGGAGTGGCCTAACACCACATTCTGATAACACCCAACTCGCCATTACAGTG
                      ____________________________________________________________
consensus AAGACCCGTGGGAGTGGCCTAACACCACATTCTGATAACACCCAACTCGCCATTACAGTG
 
. : . : . : . : . : . :
JMSF040F08+ CTCCCTCCCAAGACAAAAATCAAGACTTTTTAGGCTTTTAGCTCTGGGTTCTCTAGAACC
JMSF002L15+ CTCCCTCCCAAGACAAAAATCAAGACTTTTTAGGCTTTTAGCTCTGGGTTCTCTAGAACC
JMFF040K11+ CTCCCTCCCAAGACAAAAATCAAGACTTTTTAGGCTTTTAGCTCTGGGTTCTCTAGAACC
                      ____________________________________________________________
consensus CTCCCTCCCAAGACAAAAATCAAGACTTTTTAGGCTTTTAGCTCTGGGTTCTCTAGAACC
 
. : . : . : . : . : . :
JMSF040F08+ AGAGCTTATCAGTCCAAAAACAAATCAAAGATTCTTGAATTGAGAGAGAGAGAGAGAGAG
JMSF002L15+ AGAGCTTATCAGTCCAAAAACAAATCAAAGATTCTTGAATTGAGAGAGAGAGAGAGAGAG
JMFF040K11+ AGAGCTTATCAGTCCAAAAACAAATCAAAGATTCTTGAATTGAGAGAGAGAGAGAGAGAG
                      ____________________________________________________________
consensus AGAGCTTATCAGTCCAAAAACAAATCAAAGATTCTTGAATTGAGAGAGAGAGAGAGAGAG
 
. : . : . : . : . : . :
JMSF040F08+ AGAGGGATGATCCAAGATTTTCTGCTACTCTGCTTTCTCTCACCTACTGCTTCTGTTTAT
JMSF002L15+ AGAGGGATGATCCAAGATTTTCTGCT
JMFF040K11+ AGAGGGATGATCCAAGATTTTCTGCTACTCTGCTTTCTCTCACCTACTGCTTCTGTTTAT
                      ____________________________________________________________
consensus AGAGGGATGATCCAAGATTTTCTGCTACTCTGCTTTCTCTCACCTACTGCTTCTGTTTAT
 
. : . : . : . : . : . :
JMSF040F08+ ATATAAAGGAGACGACAGGAAACATTCCCC
JMFF040K11+ ATATAAAGGAGACGACAGGAAACATTCCCCGCCCTCTTCCTCTCCTTCGCAGGTTAGAAT
                      ____________________________________________________________
consensus ATATAAAGGAGACGACAGGAAACATTCCCCGCCCTCTTCCTCTCCTTCGCAGGTTAGAAT