Contig 010285:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040K11Sequence579010285 (3)ref|XP_009797474.1|7e-26PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Nicotiana sylvest694008612 (3)ref|XP_004506769.1|1e-84PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Cicer arietinum]
JMSF002L15Sequence299010285 (3)ref|XP_009594369.1|1e-07PREDICTED: omega-3 fatty acid desaturase, chloroplastic [Nicotiana tomentosifor665008612 (3)emb|CDP14009.1|1e-70unnamed protein product [Coffea canephora]
JMSF040F08Sequence628010285 (3)ref|XP_009797474.1|5e-44PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Nicotiana sylvest777008612 (3)emb|CDP14009.1|1e-77unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF040F08+              AATCCAAACACAGCCACAACATCCCTAACCACATAGCTCATGGACTTCCATGGGTCC
                      ____________________________________________________________
consensus                AATCCAAACACAGCCACAACATCCCTAACCACATAGCTCATGGACTTCCATGGGTCC
 
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JMSF040F08+           TTAACCCAGCAATGTTTAGGAATTGCTGCTTTAATGTCAGACAGCTTGAAGGGTGGGGGT
JMFF040K11+                                ATTGCTGCTTTAATGTCAGACAGCTTGAAGGGTGGGGGT
                      ____________________________________________________________
consensus             TTAACCCAGCAATGTTTAGGAATTGCTGCTTTAATGTCAGACAGCTTGAAGGGTGGGGGT
 
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JMSF040F08+           GCCCCAGGATCAAACCCTTCAACTTCAACTTCTTCTTNTTCATCTTTCCCAATACTCATT
JMFF040K11+           GCCCCAGGATCAAACCCTTCAACTTCAACTTCTTCTTCTTCATCTTTCCCAATACTCATT
                      ____________________________________________________________
consensus             GCCCCAGGATCAAACCCTTCAACTTCAACTTCTTCTTCTTCATCTTTCCCAATACTCATT
 
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JMSF040F08+           CCCTCCCTCTCTTCTTCACTCAGCAATGGAGCCCTCACTGGTGCGCTCACCCTCAATGCC
JMFF040K11+           CCCTCCCTCTCTTCTTCACTCAGCAATGGAGCCCTCACTGGTGCGCTCACCCTCAATGCC
                      ____________________________________________________________
consensus             CCCTCCCTCTCTTCTTCACTCAGCAATGGAGCCCTCACTGGTGCGCTCACCCTCAATGCC
 
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JMSF040F08+           CAGTTCCTCTCTTTAATCCCCAGCAATGAAAACGAAGAGCCACCAAGATCTGTTCCCAAA
JMSF002L15+                                       AAAACGAAGAGCCACCAAGATCTGTTCCCAAA
JMFF040K11+           CAGTTCCTCTCTTTAATCCCCAGCAATGAAAACGAAGAGCCACCAAGATCTGTTCCCAAA
                      ____________________________________________________________
consensus             CAGTTCCTCTCTTTAATCCCCAGCAATGAAAACGAAGAGCCACCAAGATCTGTTCCCAAA
 
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JMSF040F08+           GCTTTCAGCTTTGGTAAGCTGAGAGAATGGGTAGAAGCTGAAACAGCCCTAGGTTTTGGA
JMSF002L15+           GCTTTCAGCTTTGGTAAGCTGAGAGAATGGGTAGAAGCTGAAACAGCCCTAGGTTTTGGA
JMFF040K11+           GCTTTCAGCTTTGGTAAGCTGAGAGAATGGGTAGAAGCTGAAACAGCCCTAGGTTTTGGA
                      ____________________________________________________________
consensus             GCTTTCAGCTTTGGTAAGCTGAGAGAATGGGTAGAAGCTGAAACAGCCCTAGGTTTTGGA
 
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JMSF040F08+           AAGACCCGTGGGAGTGGCCTAACACCACATTCTGATAACACCCAACTCGCCATTACAGTG
JMSF002L15+           AAGACCCGTGGGAGTGGCCTAACACCACATTCTGATAACACCCAACTCGCCATTACAGTG
JMFF040K11+           AAGACCCGTGGGAGTGGCCTAACACCACATTCTGATAACACCCAACTCGCCATTACAGTG
                      ____________________________________________________________
consensus             AAGACCCGTGGGAGTGGCCTAACACCACATTCTGATAACACCCAACTCGCCATTACAGTG
 
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JMSF040F08+           CTCCCTCCCAAGACAAAAATCAAGACTTTTTAGGCTTTTAGCTCTGGGTTCTCTAGAACC
JMSF002L15+           CTCCCTCCCAAGACAAAAATCAAGACTTTTTAGGCTTTTAGCTCTGGGTTCTCTAGAACC
JMFF040K11+           CTCCCTCCCAAGACAAAAATCAAGACTTTTTAGGCTTTTAGCTCTGGGTTCTCTAGAACC
                      ____________________________________________________________
consensus             CTCCCTCCCAAGACAAAAATCAAGACTTTTTAGGCTTTTAGCTCTGGGTTCTCTAGAACC
 
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JMSF040F08+           AGAGCTTATCAGTCCAAAAACAAATCAAAGATTCTTGAATTGAGAGAGAGAGAGAGAGAG
JMSF002L15+           AGAGCTTATCAGTCCAAAAACAAATCAAAGATTCTTGAATTGAGAGAGAGAGAGAGAGAG
JMFF040K11+           AGAGCTTATCAGTCCAAAAACAAATCAAAGATTCTTGAATTGAGAGAGAGAGAGAGAGAG
                      ____________________________________________________________
consensus             AGAGCTTATCAGTCCAAAAACAAATCAAAGATTCTTGAATTGAGAGAGAGAGAGAGAGAG
 
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JMSF040F08+           AGAGGGATGATCCAAGATTTTCTGCTACTCTGCTTTCTCTCACCTACTGCTTCTGTTTAT
JMSF002L15+           AGAGGGATGATCCAAGATTTTCTGCT                                  
JMFF040K11+           AGAGGGATGATCCAAGATTTTCTGCTACTCTGCTTTCTCTCACCTACTGCTTCTGTTTAT
                      ____________________________________________________________
consensus             AGAGGGATGATCCAAGATTTTCTGCTACTCTGCTTTCTCTCACCTACTGCTTCTGTTTAT
 
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JMSF040F08+           ATATAAAGGAGACGACAGGAAACATTCCCC                              
JMFF040K11+           ATATAAAGGAGACGACAGGAAACATTCCCCGCCCTCTTCCTCTCCTTCGCAGGTTAGAAT
                      ____________________________________________________________
consensus             ATATAAAGGAGACGACAGGAAACATTCCCCGCCCTCTTCCTCTCCTTCGCAGGTTAGAAT