Contig 010284:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF049E18-                                                                   GAGC
                      ____________________________________________________________
consensus                                                                     GAGC
 
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JMSF049E18-           ATTACACACAGCACATCTCATCAGTCTGCAAATTAGAAGACATACACACAATGAAAATTA
                      ____________________________________________________________
consensus             ATTACACACAGCACATCTCATCAGTCTGCAAATTAGAAGACATACACACAATGAAAATTA
 
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JMSF049E18-           CTTTAAGTTTACTTATTTTCTTTTTACTTGTAACCAAGAGTTACCAAAAAAACCAATGGG
JMSF020L19-                                                      CCAAAAAAACCCATGGG
rJMSF049E18+                                                     CCAAAAAAACCAATGGG
                      ____________________________________________________________
consensus             CTTTAAGTTTACTTATTTTCTTTTTACTTGTAACCAAGAGTTACCAAAAAAACCAATGGG
 
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JMSF049E18-           ATGGCTTTGGTTTGGCACTCATATGGCCCCCAGGCTATTGTGCTTCCCTTGGTACCCGTT
JMSF020L19-           ATGGCTTTGGTTTGGCACTCATATGGCCCCCAGGCTATTGTGCTTCCATTGGTGACCGTT
rJMSF049E18+          ATGGCTTTGGTTTGGCACTCATATGGCCCCCAGGCTATTGTGCTTCCCTTGGTACCCGTT
                      ____________________________________________________________
consensus             ATGGCTTTGGTTTGGCACTCATATGGCCCCCAGGCTATTGTGCTTCCCTTGGTACCCGTT
 
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JMSF049E18-           GCGTAGTGAGTAAGGTGAAATCCGATTTCACCATCCATGGTCTATAGCCATTTGTCAACT
JMSF020L19-           GCGAAGAGAGTAAGGTGAAATCTGATTTCACCATCCATGGTCTATGGCCATTTGCCAACT
rJMSF049E18+          GCGTAGTGAGTAAGGTGAAATCCGATTTCACCATCCATGGTCTATAGCCATTTGTCAACT
                      ____________________________________________________________
consensus             GCGTAGTGAGTAAGGTGAAATCCGATTTCACCATCCATGGTCTATAGCCATTTGTCAACT
 
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JMSF049E18-           CCGGAGCAACGCTTGGGCCTGAACAAAATTCAAAACCATATCAGCCAATTCCAAAGAATT
JMSF020L19-           CCGGAGCAAAGCTTCGGCCTGGACGAAATTCAAAAACATATCAGCCAATTCCAAAGAATT
rJMSF049E18+          CCGGAGCAACGCTTGGGCCTGAACAAAATTCAAAACCATATCAGCCAATTCCAAAGAATT
                      ____________________________________________________________
consensus             CCGGAGCAACGCTTGGGCCTGAACAAAATTCAAAACCATATCAGCCAATTCCAAAGAATT
 
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JMSF049E18-           CTCCGCTCTTCAATCCACTCACTGCAAATTGGCCTAGTATTGAAGTAAACAAACCTGATG
JMSF020L19-           CTCCGCTCTTCAATCCACTCACTGCAAATTGGCCTAGTATTGAAAAAAACAAACCTGATG
rJMSF049E18+          CTCCGCTCTTCAATCCACTCACTGCAAATTGGCCTAGTATTGAAGTAAACAAACCTGATG
                      ____________________________________________________________
consensus             CTCCGCTCTTCAATCCACTCACTGCAAATTGGCCTAGTATTGAAGTAAACAAACCTGATG
 
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JMSF049E18-           ATGGTTTTTGGGCACACGAGTGGAATAACCATGGCAGGGCTTCCTTTACCCTCTTCAATC
JMSF020L19-           ATGGTTTTTGGGCACACGAGTGGAATGACCATGGCAGGGCTTCCTTTACCCTCTTCAATC
rJMSF049E18+          ATGGTTTTTGGGCACACGAGTGGAATAACCATGGCAGGGCTTCCTTTACCCTCTTCAATC
                      ____________________________________________________________
consensus             ATGGTTTTTGGGCACACGAGTGGAATAACCATGGCAGGGCTTCCTTTACCCTCTTCAATC
 
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JMSF049E18-           AAACTCAATACTTCGCTAAAGCACTGGATCTGTTGCACAGGAACAATATCGCGCGTGTTT
JMSF020L19-           AACCTCAATACTTCACTAAAGCATTGGATCTGTTGCACAGGAACAATATCACGCGTGTTT
rJMSF049E18+          AAACTCAATACTTCGCTAAAGCACTGGATCTGTTGCACAGGAACAATATCGCGCGTGTTT
                      ____________________________________________________________
consensus             AAACTCAATACTTCGCTAAAGCACTGGATCTGTTGCACAGGAACAATATCGCGCGTGTTT
 
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JMSF049E18-           TACAAAATGGTGGAATTGCTCGCGGTCACCAGTACAATGATACCCAGATTCTTAAAGCAA
JMSF020L19-           TACAAAATGGTGGAATTGCTCGTGGTCGCCAGTACAGGGATACCCAGATTCTTGACGCAA
rJMSF049E18+          TACAAAATGGTGGAATTGCTCGCGGTCACCAGTACAATGATACCCAGATTCTTAAAGCAA
                      ____________________________________________________________
consensus             TACAAAATGGTGGAATTGCTCGCGGTCACCAGTACAATGATACCCAGATTCTTAAAGCAA
 
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JMSF049E18-           TCCGTCGTGCTTTAAATGTGGATGTCAAAATTCAATGCACAGCAAAGTACCTCGTCGAGG
JMSF020L19-           TCCGTCGTGCTTTAAATGTGAATGTCAAAATTCAATGCAAAGAAAAGTACCTCGTCGAGG
rJMSF049E18+          TCCGTCGTGCTTTAAATGTGGATGTCAAAATTCAATGCACAGCAAAGTACCTCGTCGAGG
JMFF016O01+                                                                  CGAGG
                      ____________________________________________________________
consensus             TCCGTCGTGCTTTAAATGTGGATGTCAAAATTCAATGCACAGCAAAGTACCTCGTCGAGG
 
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JMSF049E18-           TTAGAATCTGCTTTGATCAAGCTGCAAAAGCCATGATCAACTGTAACACCAAAGGCATCA
JMSF020L19-           TTAGAATCTGCTTTGATCAAGCTGCAAAAGCCATGATCAACTGTAACACCAAAGGCATCA
rJMSF049E18+          TTAGAATCTGCTTTGATCAAGCTGCAAAAGCCATGATCAACTGTAACACCAAAGGCATCA
JMFF016O01+           TTAGAATCTGCTTTGATCAAGCTGCAAAAGCCATGATCAACTGTAACACCAAAGGCATCA
                      ____________________________________________________________
consensus             TTAGAATCTGCTTTGATCAAGCTGCAAAAGCCATGATCAACTGTAACACCAAAGGCATCA
 
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JMSF020L19-           TAGGATACTGCCCAAAAAG                                         
rJMSF049E18+          GAGGATACTGCCCAAAAAGCTTTACCTTCAAATAAGCTTTGGATGTTTTGGATTTTAGAA
JMFF016O01+           GAGGATACTGCCCAAAAAGCTTTACCTTCAAATAAGCTTTGGATGTTTTGGATTTTAGAA
                      ____________________________________________________________
consensus             GAGGATACTGCCCAAAAAGCTTTACCTTCAAATAAGCTTTGGATGTTTTGGATTTTAGAA
 
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rJMSF049E18+          AATAATAAATAAATGTTGAATGGTTTACTAGTTGATGTTATTTTGTGTAAGTCACCA   
JMFF016O01+           AATAATAAATAAATGTTGAATGGTTTACTAGTTGATGTTATTTTGTGTAAGTCACCACCT
                      ____________________________________________________________
consensus             AATAATAAATAAATGTTGAATGGTTTACTAGTTGATGTTATTTTGTGTAAGTCACCACCT
 
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JMFF016O01+           GAATTTCCTAAAAACGAATATATATAGTTTGCTTTAACTTAATTGCAGTTTATACAGACA
                      ____________________________________________________________
consensus             GAATTTCCTAAAAACGAATATATATAGTTTGCTTTAACTTAATTGCAGTTTATACAGACA
 
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JMFF016O01+           TATATTATATTGCATACCAAATTTTGAAAGCTGCGTGCAAAACTCTCATTATGGTCATTT
JMFF040E15+                            CAAATTTTGAAAGCTGCGTGCAAAACTCTCATTATGGTCATTT
                      ____________________________________________________________
consensus             TATATTATATTGCATACCAAATTTTGAAAGCTGCGTGCAAAACTCTCATTATGGTCATTT
 
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JMFF016O01+           CCGGGCTGAGTACAGGAGCAGTCAGTGGATGAATCACAAGCCTTGATTGTACTGGCTTCT
JMFF040E15+           CCGGGCTGAGTACAGGAGCAGTCAGTGGATGAATCACAAGCCTTGATTGTACTGGCTTCT
                      ____________________________________________________________
consensus             CCGGGCTGAGTACAGGAGCAGTCAGTGGATGAATCACAAGCCTTGATTGTACTGGCTTCT
 
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JMFF016O01+           AACACTCAGATCATATTCCACCCTGTGATCAAGCTAATTAATAGCGTGTTCGTTAGCCAT
JMFF040E15+           AACACTCAGATCATATTCCACCCTGTGATCAAGCTAATTAATAGCGTGTTCGTTAGCCAT
                      ____________________________________________________________
consensus             AACACTCAGATCATATTCCACCCTGTGATCAAGCTAATTAATAGCGTGTTCGTTAGCCAT
 
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JMFF016O01+           AATGCTACTCAATCTGTGAGACTTTGACACATCATTACCACCATTAGTGTCTCGACAGCC
JMFF040E15+           AATGCTACTCAATCTGTGAGACTTTGACACATCATTACCACCATTAGTGTCTCGACAGCC
                      ____________________________________________________________
consensus             AATGCTACTCAATCTGTGAGACTTTGACACATCATTACCACCATTAGTGTCTCGACAGCC
 
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JMFF016O01+           CGCCCCTCAAAACATCATCCATCAGCAGGAAGTTTGTAGGAGGGAGAATGAGCCCGGCAA
JMFF040E15+           CGCCCCTCAAAACATCATCCATCAGCAGGAAGTTTGTAGGAGGGAGAATGAGCCCGGCAA
                      ____________________________________________________________
consensus             CGCCCCTCAAAACATCATCCATCAGCAGGAAGTTTGTAGGAGGGAGAATGAGCCCGGCAA
 
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JMFF016O01+           TCTAGCCAAAATCTCGATCAGCAGCTCCCTTGGTAATTTGCAATTCTCCATTTTCTTT  
JMFF040E15+           TCTAGCCAAAATCTCGATCAGCAGCTCCCTTGGTAATTTGCAATTCTCCATTTTCTTTTT
                      ____________________________________________________________
consensus             TCTAGCCAAAATCTCGATCAGCAGCTCCCTTGGTAATTTGCAATTCTCCATTTTCTTTTT