Contig 010277:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038B11Sequence575010277 (4)ref|XP_009626549.1|2e-97PREDICTED: ubiquitin-conjugating enzyme E2 variant 1B-like [Nicotiana tomentosi721010277 (4)ref|XP_009626549.1|2e-96PREDICTED: ubiquitin-conjugating enzyme E2 variant 1B-like [Nicotiana tomentosi
JMSF046B06Sequence711010277 (4)ref|XP_009626549.1|2e-96PREDICTED: ubiquitin-conjugating enzyme E2 variant 1B-like [Nicotiana tomentosi663010277 (4)ref|XP_009626549.1|7e-97PREDICTED: ubiquitin-conjugating enzyme E2 variant 1B-like [Nicotiana tomentosi

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF038B11- GCTTATTCATAGAATTTGAAATTTGATATTGAATCTCTCAAGCCATTGT
JMSF046B06+ ATCTCTCAAGCCATTGT
                      ____________________________________________________________
consensus GCTTATTCATAGAATTTGAAATTTGATATTGAATCTCTCAAGCCATTGT
 
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rJMFF038B11- GTATGATAAAGGTGAATTGGAATATCACATCAGTATCCACAGGTACAAGTACACATGCAG
JMSF046B06+ GTATGATAAAGGTGAATTGGAATATCACATCAGTATCCACAGGTACAAGTACACATGCAG
rJMSF046B06- TACAAGTACACATGCAG
                      ____________________________________________________________
consensus GTATGATAAAGGTGAATTGGAATATCACATCAGTATCCACAGGTACAAGTACACATGCAG
 
. : . : . : . : . : . :
rJMFF038B11- CATATGCTTAC--ATATATATAGTTATATAATATATATTAAGGGTTCCAAGAGATTATTT
JMSF046B06+ CATATGCTTACATATATATATAGTTATATAATATATATTAAGGGTTCCAAGAGATTATTT
rJMSF046B06- CATATGCTTACATATATATATAGTTATATAATATATATTAAGGGTTCCAAGAGATTATTT
                      ____________________________________________________________
consensus CATATGCTTACATATATATATAGTTATATAATATATATTAAGGGTTCCAAGAGATTATTT
 
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rJMFF038B11- GTTAAAGGCTATGTACATCTCGATGTTCGATGGTATACTCACAATTAGAGGATGCAACAC
JMSF046B06+ GTTAAAGGCTATGTACATCTCGATGTTCGATGGTATACTCACAATTAGAGGATGCAACAC
rJMSF046B06- GTTAAAGGCTATGTACATCTCGATGTTCGATGGTATACTCACAATTAGAGGATGCAACAC
JMFF038B11+ TTCGATGGTATACTCACAATTAGAGGATGCAACAC
                      ____________________________________________________________
consensus GTTAAAGGCTATGTACATCTCGATGTTCGATGGTATACTCACAATTAGAGGATGCAACAC
 
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rJMFF038B11- CTTAGCACAATCCCTTTTTGATCCACCCGCCCATCTTCGTTGCCTGCTTCAGGAGGTTGA
JMSF046B06+ CTTAGCACAATCCCTTTTTGATCCACCCGCCCATCTTCGTTGCCTGCTTCAGGAGGTTGA
rJMSF046B06- CTTAGCACAATCCCTTTTTGATCCACCCGCCCATCTTCGTTGCCTGCTTCAGGAGGTTGA
JMFF038B11+ CTTAGCACAATCCCTTTTTGATCCACCCGCCCATCTTCGTTGCCTGCTTCAGGAGGTTGA
                      ____________________________________________________________
consensus CTTAGCACAATCCCTTTTTGATCCACCCGCCCATCTTCGTTGCCTGCTTCAGGAGGTTGA
 
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rJMFF038B11- ACTAGCTTTCGATTTTGGGGAGACATCATATCCTTTTTCAACTGCAATAATACATCCTCC
JMSF046B06+ ACTAGCTTTCGATTTTGGGGAGACATCATATCCTTTTTCAACTGCAATAATACATCCTCC
rJMSF046B06- ACTAGCTTTCGATTTTGGGGAGACATCATATCCTTTTTCAACTGCAATAATACATCCTCC
JMFF038B11+ ACTAGCTTTCGATTTTGGGGAGACATCATATCCTTTTTCAACTGCAATAATACATCCTCC
                      ____________________________________________________________
consensus ACTAGCTTTCGATTTTGGGGAGACATCATATCCTTTTTCAACTGCAATAATACATCCTCC
 
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rJMFF038B11- ATTGTGTGCTCCCTTTTCCAATCAGCAAGCATGGGGAAAAGAATCGGTTCAACCACACCA
JMSF046B06+ ATTGTGTGCTCCCTTTTCCAATCAGCAAGCATGGGGAAAAGAATCGGTTCAACCACACCA
rJMSF046B06- ATTGTGTGCTCCCTTTTCCAATCAGCAAGCATGGGGAAAAGAATCGGTTCAACCACACCA
JMFF038B11+ ATTGTGTGCTCCCTTTTCCAATCAGCAAGCATGGGGAAAAGAATCGGTTCAACCACACCA
                      ____________________________________________________________
consensus ATTGTGTGCTCCCTTTTCCAATCAGCAAGCATGGGGAAAAGAATCGGTTCAACCACACCA
 
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rJMFF038B11- GTTTCTTGATTAACACAGCTCATGTTTATCCTGGTTTGAAACCTTACACTGGGTGGTTTA
JMSF046B06+ GTTTCTTGATTAACACAGCTCATGTTTATCCTGGTTTGAAACCTTACACTGGGTGGTTTA
rJMSF046B06- GTTTCTTGATTAACACAGCTCATGTTTATCCTGGTTTGAAACCTTACACTGGGTGGTTTA
JMFF038B11+ GTTTCTTGATTAACACAGCTCATGTTTATCCTGGTTTGAAACCTTACACTGGGTGGTTTA
                      ____________________________________________________________
consensus GTTTCTTGATTAACACAGCTCATGTTTATCCTGGTTTGAAACCTTACACTGGGTGGTTTA
 
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rJMFF038B11- TCAGGATAGTCCTGTCCGCAGAACAGCTTCAACTGGTAGATTCGCCCTTCATGTACAGTA
JMSF046B06+ TCAGGATAATCCTGTCCGCAGAACAGCTTCAACTGGTAGATTCGCCCTTCATGTACAGTA
rJMSF046B06- TCAGGATAATCCTGTCCGCAGAACAGCTTCAACTGGTAGATTCGCCCTTCATGTACAGTA
JMFF038B11+ TCAGGATAGTCCTGTCCGCAGAACAGCTTCAACTGGTAGATTCGCCCTTCATGTACAGTA
                      ____________________________________________________________
consensus TCAGGATAGTCCTGTCCGCAGAACAGCTTCAACTGGTAGATTCGCCCTTCATGTACAGTA
 
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rJMFF038B11- TTTGGAGGACCAATTATTGTTCCAGTCCAAGACTGCATGTAAACATCATCAGCATCATCC
JMSF046B06+ TTTGGAGGACCAATTATTGTTCCAGTCCAAGACTGCATGTAAACATCATCAGCATCATCC
rJMSF046B06- TTTGGAGGACCAATTATTGTTCCAGTCCAAGACTGCATGTAAACATCATCAGCATCATCC
JMFF038B11+ TTTGGAGGACCAATTATTGTTCCAGTCCAAGACTGCATGTAAACATCATCAGCATCATCC
                      ____________________________________________________________
consensus TTTGGAGGACCAATTATTGTTCCAGTCCAAGACTGCATGTAAACATCATCAGCATCATCC
 
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rJMFF038B11- ATTCCATAGCTGACAGTTCCATCTCCTATTCCCTTTTCTCCCCTCTCAAGTTCTTCTAGT
JMSF046B06+ ATTCCATAGCTGACAGTTCCATCTCCTATTCCCTTTTCTCCCCTCTCAAGTTCTTCTAGT
rJMSF046B06- ATTCCATAGCTGACAGTTCCATCTCCTATTCCCTTTTCTCCCCTCTCAAGTTCTTCTAGT
JMFF038B11+ ATTCCATAGCTGACAGTTCCATCTCCTATTCCCTTTTCTCCCCTCTCAAGTTCTTCTAGT
                      ____________________________________________________________
consensus ATTCCATAGCTGACAGTTCCATCTCCTATTCCCTTTTCTCCCCTCTCAAGTTCTTCTAGT
 
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rJMFF038B11- AATCTGAAGTTTCTTGGAACTACAACGGCAGATGAACCCTCAGAACCCATATCCTGGAGC
JMSF046B06+ AATCTGAAGTTTCTTGGAACTACAACGGCAGATGAACCCTCAGAACCCATATCCTGGAGC
rJMSF046B06- AATCTGAAGTTTCTTGGAACTACAACGGCAGATGAACCCTCAGAACCCATATCCTGGAGC
JMFF038B11+ AATCTGAAGTTTCTTGGAACTACAACGGCAGATGAACCCTCAGAACCCATATCCTGGAGC
                      ____________________________________________________________
consensus AATCTGAAGTTTCTTGGAACTACAACGGCAGATGAACCCTCAGAACCCATATCCTGGAGC
 
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rJMFF038B11- ATTTGGAGTAGTTG
JMSF046B06+ ATTTGGAGTAGTTGAAAGGGG
rJMSF046B06- ATTTGGAGTAGTTGAAAGGGG
JMFF038B11+ ATTTGGAGTAGTTGAAAGGGGATTTGTATGGAAGGAAGAGAGAAATGAAGATTGAATAGT
                      ____________________________________________________________
consensus ATTTGGAGTAGTTGAAAGGGGATTTGTATGGAAGGAAGAGAGAAATGAAGATTGAATAGT