Contig 010272:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015H01Sequence598010272 (2)ref|XP_009773670.1|3e-58PREDICTED: high mobility group B protein 10-like [Nicotiana sylvestris]680005472 (2)ref|XP_011095645.1|5e-52PREDICTED: high mobility group B protein 10 [Sesamum indicum]
JMFF036I06Sequence571010272 (2)ref|XP_009773670.1|3e-55PREDICTED: high mobility group B protein 10-like [Nicotiana sylvestris]712005472 (2)ref|XP_011095645.1|2e-57PREDICTED: high mobility group B protein 10 [Sesamum indicum]

Alignment

This contig is upended


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JMFF015H01+                  AATCGCCCACTTCGATACTAGGAGCCCCTGACAGTGGATTTACGGTGGCATCG
                      ____________________________________________________________
consensus                    AATCGCCCACTTCGATACTAGGAGCCCCTGACAGTGGATTTACGGTGGCATCG
 
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JMFF015H01+           CCATCAATAGGATGTCCGGTTTCTAAGACACTGAAAGTTTTGTCAGTAGGATCGGGGACA
JMFF036I06+                                        ACTGAAAGTTTTGTCAGTAGGATCGGGGACA
                      ____________________________________________________________
consensus             CCATCAATAGGATGTCCGGTTTCTAAGACACTGAAAGTTTTGTCAGTAGGATCGGGGACA
 
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JMFF015H01+           GATGAAGGCTCTTCCTTGCGGAAGTAATAGACCTGCTCAAAGTGATAGAGCATGGAGAGG
JMFF036I06+           GATGAAGGCTCTTCCTTGCGGAAGTAATAGACCTGCTCAAAGTGATAGAGCATGGAGAGG
                      ____________________________________________________________
consensus             GATGAAGGCTCTTCCTTGCGGAAGTAATAGACCTGCTCAAAGTGATAGAGCATGGAGAGG
 
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JMFF015H01+           TAGTACTTTCTTAAGATGAATGATGCACTTGTTACATAGGATGGAAAAGTGAATGCCCCA
JMFF036I06+           TAGTACTTTCTTAAGATGAATGATGCACTTGTTACATAGGATGGAAAAGTGAATGCCCCA
                      ____________________________________________________________
consensus             TAGTACTTTCTTAAGATGAATGATGCACTTGTTACATAGGATGGAAAAGTGAATGCCCCA
 
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JMFF015H01+           ATCACATCTTCCCATCTTCGATCTCTAATAACCTTTTCTATTCCACCTCGCGAAGTAACC
JMFF036I06+           ATCACATCTTCCCATCTTCGATCTCTAATAACCTTTTCTATTCCACCTCGCGAAGTAACC
                      ____________________________________________________________
consensus             ATCACATCTTCCCATCTTCGATCTCTAATAACCTTTTCTATTCCACCTCGCGAAGTAACC
 
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JMFF015H01+           TCCACAAAAAGACGATGTAGATCTAGAGGCTTTCCTGCTACAGTAGGAACCAAGTATTTG
JMFF036I06+           TCCACAAAAAGACGATGTAGATCTAGAGGCTTTCCTGCTACAGTAGGAACCAAGTATTTG
                      ____________________________________________________________
consensus             TCCACAAAAAGACGATGTAGATCTAGAGGCTTTCCTGCTACAGTAGGAACCAAGTATTTG
 
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JMFF015H01+           GCAGCCAAAGAAACATGGAAAGCTTGAAGCATTTGCCAGAAAAGCTGTGGGTCTCGAACA
JMFF036I06+           GCAGCCAAAGAAACATGGAAAGCTTGAAGCATTTGCCAGAAAAGCTGTGGGTCTCGAACA
                      ____________________________________________________________
consensus             GCAGCCAAAGAAACATGGAAAGCTTGAAGCATTTGCCAGAAAAGCTGTGGGTCTCGAACA
 
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JMFF015H01+           ATTTCCTGAAACTCAGCTTGGGGCTTAGGGTAAGAGAGCGGGCGCTTGGATTGACCCGAA
JMFF036I06+           ATTTCCTGAAACTCAGCTTGGGGCTTAGGGTAAGAGAGCGGGCGCTTGGATTGACCCGAA
                      ____________________________________________________________
consensus             ATTTCCTGAAACTCAGCTTGGGGCTTAGGGTAAGAGAGCGGGCGCTTGGATTGACCCGAA
 
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JMFF015H01+           GAGGGAGCAGTGAGAGGCGTTCCCGTGGGTGAAGGGTTAGATGACATTTTTGTTGCCGAT
JMFF036I06+           GAGGGAGCAGTGAGAGGCGTTCCCGTGGGTGAAGGGTTAGATGACATTTTTGTTGCCGAT
                      ____________________________________________________________
consensus             GAGGGAGCAGTGAGAGGCGTTCCCGTGGGTGAAGGGTTAGATGACATTTTTGTTGCCGAT
 
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JMFF015H01+           AATTATACTCCCTAATTGTTTGCAGTATGAACTCGTAAACCTCCCATTCCCTCTGCTCCT
JMFF036I06+           AATTATACTCCCTAATTGTTTGCAGTATGAACTCGTAAACCTCCCATTCCCTCTGCTCCT
                      ____________________________________________________________
consensus             AATTATACTCCCTAATTGTTTGCAGTATGAACTCGTAAACCTCCCATTCCCTCTGCTCCT
 
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JMFF015H01+           ACGGC                                                       
JMFF036I06+           ACGGCACAGCGATGAAGTATCAAATTTTTTCTTAGTAATCAATGTCTGCCCACAAATTAT
                      ____________________________________________________________
consensus             ACGGCACAGCGATGAAGTATCAAATTTTTTCTTAGTAATCAATGTCTGCCCACAAATTAT