Contig 010263:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014P11Sequence521010263 (5)ref|XP_009601923.1|3e-25PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic792007198 (9)ref|XP_009801460.1|6e-103PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic
JMFF018H22Sequence544010263 (5)ref|XP_009601923.1|3e-28PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic751007198 (9)emb|CBI27495.3|3e-85unnamed protein product [Vitis vinifera]
JMFF033O03Sequence504010263 (5)ref|XP_009601923.1|2e-16PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic750007198 (9)ref|XP_009801460.1|2e-103PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic
JMFF041N24Sequence631010263 (5)ref|XP_009801460.1|1e-46PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic575007198 (9)emb|CAN71209.1|5e-50hypothetical protein VITISV_030057 [Vitis vinifera]
JMFF044F13Sequence645010263 (5)ref|XP_009801460.1|3e-45PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic628007198 (9)emb|CDP07966.1|5e-75unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF041N24+ ATCATAATCAATCAAAGATTCAAGCAAACTATTTACAATCT
JMFF044F13+ CAGCAGCCCTTTTATCATAATCAATCAAAGATTCAAGCAAACTATTTACAATCT
                      ____________________________________________________________
consensus CAGCAGCCCTTTTATCATAATCAATCAAAGATTCAAGCAAACTATTTACAATCT
 
. : . : . : . : . : . :
JMFF041N24+ TGAACTTCCTAGCTCTAACACAGCTACTAATCAGTCTACAACAGGTGGAACCATCAGGGA
JMFF018H22+ TACAACAGGTGGAACCATCAGGGA
JMFF044F13+ GAACTTTCCTAGCTCTAACACAGCTACTAATCAGTCTACAACAGGTGGAACCATCAGGGA
                      ____________________________________________________________
consensus TGACTTTCCTAGCTCTAACACAGCTACTAATCAGTCTACAACAGGTGGAACCATCAGGGA
 
. : . : . : . : . : . :
JMFF041N24+ GAACATGGAAAGCCCTGAAATCCTGAAGCAACAGAGAGATTGAGCCCCAGTTTCTGGAGC
JMFF018H22+ GAACATGGAAAGCCCTGAAATCCTGAAGCAACAGAGAGATTGAGCCCCAGTTTCTGGAGC
JMFF044F13+ GAACATGGAAAGCCCTGAAATCCTGAAGCAACAGAGAGATTGAGCCCCAGTTTCTGGAGC
JMFF014P11+ CTGAAGCAACAGAGAGATTGAGCCCCAGTTTCTGGAGC
                      ____________________________________________________________
consensus GAACATGGAAAGCCCTGAAATCCTGAAGCAACAGAGAGATTGAGCCCCAGTTTCTGGAGC
 
. : . : . : . : . : . :
JMFF041N24+ TCATAAAGTACCTGACAAGAAGATTCAGGGTGGATCTCTGTGGGATAAAACCCGGATTCC
JMFF018H22+ TCATAAAGTACCTGACAAGAAGATTCAGGGTGGATCTCTGTGGGATAAAACCCGGATTCC
JMFF044F13+ TCATAAAGTACCTGACAAGAAGATTCAGGGTGGATCTCTGTGGGATAAAACCCGGATTCC
JMFF014P11+ TCATAAAGTACCTGACAAGAAGATTCAGGGTGGATCTCTGTGGGATAAAACCCGGATTCC
JMFF033O03+ TCTGTGGGATAAAACCCGGATTCC
                      ____________________________________________________________
consensus TCATAAAGTACCTGACAAGAAGATTCAGGGTGGATCTCTGTGGGATAAAACCCGGATTCC
 
. : . : . : . : . : . :
JMFF041N24+ CCTTCGCCTTCTCGTAATACTCGTGCCCAATCCCTGCAGTGTGGGGATCCTTGAGTAAGG
JMFF018H22+ CCTTCGCCTTNTCGTAATACTCGTGCCCAATCCCTGCAGTGTGGGGATCCTTGAGTAAGG
JMFF044F13+ CCTTCGCCTTCTCGTAATACTCGTGCCCAATCCCTGCAGTGTGGGGATCCTTGAGTAAGG
JMFF014P11+ CCTTCGCCTTCTCGTAATACTCGTGCCCAATCCCTGCAGTGTGGGGATCCTTGAGTAAGG
JMFF033O03+ CCTTCGCCTTCTCGTAATACTCGTGCCCAATCCCTGCAGTGTGGGGATCCTTGAGTAAGG
                      ____________________________________________________________
consensus CCTTCGCCTTCTCGTAATACTCGTGCCCAATCCCTGCAGTGTGGGGATCCTTGAGTAAGG
 
. : . : . : . : . : . :
JMFF041N24+ TGCAGATAAGGGCATTGAAATCCTCAGGCTCTGGCAAAGGAGAAGGGCAAAGATCCTGAA
JMFF018H22+ TGCAGATAAGGGCATTGAAATCCTCAGGCTNTGGCAAAGGAGAAGGGCAAAGATCCTGAA
JMFF044F13+ TGCAGATAAGGGCATTGAAATCCTCAGGCTCTGGCAAAGGAGAAGGGCAAAGATCCTGAA
JMFF014P11+ TGCAGATAAGGGCATTGAAATCCTCAGGCTNTGGCAAAGGAGAAGGGCAAAGATCCTGAA
JMFF033O03+ TGCAGATAAGGGCATTGAAATCCTCAGGCTNTGGCAAAGGAGAAGGGCAAAGATCCTGAA
                      ____________________________________________________________
consensus TGCAGATAAGGGCATTGAAATCCTCAGGCTCTGGCAAAGGAGAAGGGCAAAGATCCTGAA
 
. : . : . : . : . : . :
JMFF041N24+ GCTGCAAGTCCAATTCTATGGTGGGCTGGGAGTTATTGGGAGTGGAGGAAGCTTGGTGTT
JMFF018H22+ GCTGCAAGTCCAATTNTATGGTGGGCTGGGAGTTATTGGGAGTGGAGGAAGCTTGGTGTT
JMFF044F13+ GCTGCAAGTCCAATTCTATGGTGGGCTGGGAGTTATTGGGAGTGGAGGAAGCTTGGTGTT
JMFF014P11+ GCTGCAAGTCCAATTNTATGGTGGGCTGGGAGTTATTGGGAGTGGAGGAAGCTTGGTGTT
JMFF033O03+ GCTGCAAGTCCAATTNTATGGTGGGCTGGGAGTTATTGGGAGTGGAGGAAGCTTGGTGTT
                      ____________________________________________________________
consensus GCTGCAAGTCCAATTCTATGGTGGGCTGGGAGTTATTGGGAGTGGAGGAAGCTTGGTGTT
 
. : . : . : . : . : . :
JMFF041N24+ CAAGAACTGGGGCTGAGCAGCTGGAGGATCTTGCAGAAAGGTTGAGATCCCTGGAGGAGT
JMFF018H22+ CAAGAACTGGGGCTGAGCAGCTGGAGGATNTTGCAGAAAGGTTGAGATCCCTGGAGGAGT
JMFF044F13+ CAAGAACTGGGGCTGAGCAGCTGGAGGATCTTGCAGAAAGGTTGAGATCCCTGGAGGAGT
JMFF014P11+ CAAGAACTGGGACTGAGCAGCTGGAGGATCTTGCAGAAAGGTTGAGATCCCTGGAGGAGT
JMFF033O03+ CAAGAACTGGGGCTGAGCAGCTGGAGGATCTTGCAGAAAGGTTGAGATCCCTGGAGGAGT
                      ____________________________________________________________
consensus CAAGAACTGGGGCTGAGCAGCTGGAGGATCTTGCAGAAAGGTTGAGATCCCTGGAGGAGT
 
. : . : . : . : . : . :
JMFF041N24+ TGAAGGAGAGGAGAGAGAGCAAAGGGAGGTTTCTGTTTCTGCTCATCATCATCATCAATC
JMFF018H22+ TGAAGGAGAGGAGAGAGAGCAAAGGGAGGTTTCTGTTTNTGCTCATCATCATCATCAATC
JMFF044F13+ TGAAGGAGAGGAGAGAGAGCAAAGGGAGGTTTCTGTTTCTGCTCATCATCATCATCAATC
JMFF014P11+ TGAAGGAGAGGAGAGAGAGCAAAGGGAGGTTTCTGTTTCTGCTCATCATCATCATCAATC
JMFF033O03+ TGAAGGAGAGGAGAGAGAGCAAAGGGAGGTTTCTGTTTCTGCTCATCATCATCATCAATC
                      ____________________________________________________________
consensus TGAAGGAGAGGAGAGAGAGCAAAGGGAGGTTTCTGTTTCTGCTCATCATCATCATCAATC
 
. : . : . : . : . : . :
JMFF041N24+ TGCTGTTACTACTGATCCTT-CAGTGTTGTTGTTGCAGGGGATGATCCATTCTGGAGTGG
JMFF018H22+ TGCTGTTACTACTGATCCTTGCAGTGTTGTTGTTGCAGGGGATGATCCATTCTGGAGTGG
JMFF044F13+ TGCTGTTACTACTGATCCTTGCAGTGTTGTTGTTGCAGGGGATGATCCATTCTGGAGTGG
JMFF014P11+ TGCTGTTACTACTGATCCTTGCAGTGTTGTTGTTGCAGGGGATGATCCATTCTGGAGTGG
JMFF033O03+ TGCTGTTACTACTGATCCTTGCAGTGTTGTTGTTGCAGGGGATGATCCATTCTGGAGTGG
                      ____________________________________________________________
consensus TGCTGTTACTACTGATCCTTGCAGTGTTGTTGTTGCAGGGGATGATCCATTCTGGAGTGG
 
. : . : . : . : . : . :
JMFF041N24+ TGGGAAATGCCATGGGAGAAGCAAATGTTTTTTTTTTCACATTGGTTTCA
JMFF018H22+ TGGGAAATGCCATGGGAGAAGCAAATGTTTTTTTTTTCAC
JMFF044F13+ TGGGAAATGCCATGGGAGAAGCAAATGTTTTTTTTTTCACATTGGTTTCA
JMFF014P11+ TGGGAAATGCCATGGGAGAAGCAAATGTTTTTTTTTTCACATTGGTTTCAAAGAATTTCT
JMFF033O03+ TGGGAAATGCCATGGGAGAAGCAAATGTTTTTTTTTTCACATTGGTTTCAAAGAATTTTT
                      ____________________________________________________________
consensus TGGGAAATGCCATGGGAGAAGCAAATGTTTTTTTTTTCACATTGGTTTCAAAGAATTTTT
 
. : . : . : . : . : . :
JMFF014P11+ GGG
JMFF033O03+ GGGGAAGAAGATGATGATGATGATGATGGTTTGTGTATGGGAATCTTAGCTTAGCTTATC
                      ____________________________________________________________
consensus GGGGAAGAAGATGATGATGATGATGATGGTTTGTGTATGGGAATCTTAGCTTAGCTTATC