Contig 010263:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014P11Sequence521010263 (5)ref|XP_009601923.1|3e-25PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic792007198 (9)ref|XP_009801460.1|6e-103PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic
JMFF018H22Sequence544010263 (5)ref|XP_009601923.1|3e-28PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic751007198 (9)emb|CBI27495.3|3e-85unnamed protein product [Vitis vinifera]
JMFF033O03Sequence504010263 (5)ref|XP_009601923.1|2e-16PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic750007198 (9)ref|XP_009801460.1|2e-103PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic
JMFF041N24Sequence631010263 (5)ref|XP_009801460.1|1e-46PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic575007198 (9)emb|CAN71209.1|5e-50hypothetical protein VITISV_030057 [Vitis vinifera]
JMFF044F13Sequence645010263 (5)ref|XP_009801460.1|3e-45PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic628007198 (9)emb|CDP07966.1|5e-75unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF041N24+                              ATCATAATCAATCAAAGATTCAAGCAAACTATTTACAATCT
JMFF044F13+                 CAGCAGCCCTTTTATCATAATCAATCAAAGATTCAAGCAAACTATTTACAATCT
                      ____________________________________________________________
consensus                   CAGCAGCCCTTTTATCATAATCAATCAAAGATTCAAGCAAACTATTTACAATCT
 
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JMFF041N24+           TGAACTTCCTAGCTCTAACACAGCTACTAATCAGTCTACAACAGGTGGAACCATCAGGGA
JMFF018H22+                                               TACAACAGGTGGAACCATCAGGGA
JMFF044F13+           GAACTTTCCTAGCTCTAACACAGCTACTAATCAGTCTACAACAGGTGGAACCATCAGGGA
                      ____________________________________________________________
consensus             TGACTTTCCTAGCTCTAACACAGCTACTAATCAGTCTACAACAGGTGGAACCATCAGGGA
 
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JMFF041N24+           GAACATGGAAAGCCCTGAAATCCTGAAGCAACAGAGAGATTGAGCCCCAGTTTCTGGAGC
JMFF018H22+           GAACATGGAAAGCCCTGAAATCCTGAAGCAACAGAGAGATTGAGCCCCAGTTTCTGGAGC
JMFF044F13+           GAACATGGAAAGCCCTGAAATCCTGAAGCAACAGAGAGATTGAGCCCCAGTTTCTGGAGC
JMFF014P11+                                 CTGAAGCAACAGAGAGATTGAGCCCCAGTTTCTGGAGC
                      ____________________________________________________________
consensus             GAACATGGAAAGCCCTGAAATCCTGAAGCAACAGAGAGATTGAGCCCCAGTTTCTGGAGC
 
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JMFF041N24+           TCATAAAGTACCTGACAAGAAGATTCAGGGTGGATCTCTGTGGGATAAAACCCGGATTCC
JMFF018H22+           TCATAAAGTACCTGACAAGAAGATTCAGGGTGGATCTCTGTGGGATAAAACCCGGATTCC
JMFF044F13+           TCATAAAGTACCTGACAAGAAGATTCAGGGTGGATCTCTGTGGGATAAAACCCGGATTCC
JMFF014P11+           TCATAAAGTACCTGACAAGAAGATTCAGGGTGGATCTCTGTGGGATAAAACCCGGATTCC
JMFF033O03+                                               TCTGTGGGATAAAACCCGGATTCC
                      ____________________________________________________________
consensus             TCATAAAGTACCTGACAAGAAGATTCAGGGTGGATCTCTGTGGGATAAAACCCGGATTCC
 
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JMFF041N24+           CCTTCGCCTTCTCGTAATACTCGTGCCCAATCCCTGCAGTGTGGGGATCCTTGAGTAAGG
JMFF018H22+           CCTTCGCCTTNTCGTAATACTCGTGCCCAATCCCTGCAGTGTGGGGATCCTTGAGTAAGG
JMFF044F13+           CCTTCGCCTTCTCGTAATACTCGTGCCCAATCCCTGCAGTGTGGGGATCCTTGAGTAAGG
JMFF014P11+           CCTTCGCCTTCTCGTAATACTCGTGCCCAATCCCTGCAGTGTGGGGATCCTTGAGTAAGG
JMFF033O03+           CCTTCGCCTTCTCGTAATACTCGTGCCCAATCCCTGCAGTGTGGGGATCCTTGAGTAAGG
                      ____________________________________________________________
consensus             CCTTCGCCTTCTCGTAATACTCGTGCCCAATCCCTGCAGTGTGGGGATCCTTGAGTAAGG
 
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JMFF041N24+           TGCAGATAAGGGCATTGAAATCCTCAGGCTCTGGCAAAGGAGAAGGGCAAAGATCCTGAA
JMFF018H22+           TGCAGATAAGGGCATTGAAATCCTCAGGCTNTGGCAAAGGAGAAGGGCAAAGATCCTGAA
JMFF044F13+           TGCAGATAAGGGCATTGAAATCCTCAGGCTCTGGCAAAGGAGAAGGGCAAAGATCCTGAA
JMFF014P11+           TGCAGATAAGGGCATTGAAATCCTCAGGCTNTGGCAAAGGAGAAGGGCAAAGATCCTGAA
JMFF033O03+           TGCAGATAAGGGCATTGAAATCCTCAGGCTNTGGCAAAGGAGAAGGGCAAAGATCCTGAA
                      ____________________________________________________________
consensus             TGCAGATAAGGGCATTGAAATCCTCAGGCTCTGGCAAAGGAGAAGGGCAAAGATCCTGAA
 
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JMFF041N24+           GCTGCAAGTCCAATTCTATGGTGGGCTGGGAGTTATTGGGAGTGGAGGAAGCTTGGTGTT
JMFF018H22+           GCTGCAAGTCCAATTNTATGGTGGGCTGGGAGTTATTGGGAGTGGAGGAAGCTTGGTGTT
JMFF044F13+           GCTGCAAGTCCAATTCTATGGTGGGCTGGGAGTTATTGGGAGTGGAGGAAGCTTGGTGTT
JMFF014P11+           GCTGCAAGTCCAATTNTATGGTGGGCTGGGAGTTATTGGGAGTGGAGGAAGCTTGGTGTT
JMFF033O03+           GCTGCAAGTCCAATTNTATGGTGGGCTGGGAGTTATTGGGAGTGGAGGAAGCTTGGTGTT
                      ____________________________________________________________
consensus             GCTGCAAGTCCAATTCTATGGTGGGCTGGGAGTTATTGGGAGTGGAGGAAGCTTGGTGTT
 
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JMFF041N24+           CAAGAACTGGGGCTGAGCAGCTGGAGGATCTTGCAGAAAGGTTGAGATCCCTGGAGGAGT
JMFF018H22+           CAAGAACTGGGGCTGAGCAGCTGGAGGATNTTGCAGAAAGGTTGAGATCCCTGGAGGAGT
JMFF044F13+           CAAGAACTGGGGCTGAGCAGCTGGAGGATCTTGCAGAAAGGTTGAGATCCCTGGAGGAGT
JMFF014P11+           CAAGAACTGGGACTGAGCAGCTGGAGGATCTTGCAGAAAGGTTGAGATCCCTGGAGGAGT
JMFF033O03+           CAAGAACTGGGGCTGAGCAGCTGGAGGATCTTGCAGAAAGGTTGAGATCCCTGGAGGAGT
                      ____________________________________________________________
consensus             CAAGAACTGGGGCTGAGCAGCTGGAGGATCTTGCAGAAAGGTTGAGATCCCTGGAGGAGT
 
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JMFF041N24+           TGAAGGAGAGGAGAGAGAGCAAAGGGAGGTTTCTGTTTCTGCTCATCATCATCATCAATC
JMFF018H22+           TGAAGGAGAGGAGAGAGAGCAAAGGGAGGTTTCTGTTTNTGCTCATCATCATCATCAATC
JMFF044F13+           TGAAGGAGAGGAGAGAGAGCAAAGGGAGGTTTCTGTTTCTGCTCATCATCATCATCAATC
JMFF014P11+           TGAAGGAGAGGAGAGAGAGCAAAGGGAGGTTTCTGTTTCTGCTCATCATCATCATCAATC
JMFF033O03+           TGAAGGAGAGGAGAGAGAGCAAAGGGAGGTTTCTGTTTCTGCTCATCATCATCATCAATC
                      ____________________________________________________________
consensus             TGAAGGAGAGGAGAGAGAGCAAAGGGAGGTTTCTGTTTCTGCTCATCATCATCATCAATC
 
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JMFF041N24+           TGCTGTTACTACTGATCCTT-CAGTGTTGTTGTTGCAGGGGATGATCCATTCTGGAGTGG
JMFF018H22+           TGCTGTTACTACTGATCCTTGCAGTGTTGTTGTTGCAGGGGATGATCCATTCTGGAGTGG
JMFF044F13+           TGCTGTTACTACTGATCCTTGCAGTGTTGTTGTTGCAGGGGATGATCCATTCTGGAGTGG
JMFF014P11+           TGCTGTTACTACTGATCCTTGCAGTGTTGTTGTTGCAGGGGATGATCCATTCTGGAGTGG
JMFF033O03+           TGCTGTTACTACTGATCCTTGCAGTGTTGTTGTTGCAGGGGATGATCCATTCTGGAGTGG
                      ____________________________________________________________
consensus             TGCTGTTACTACTGATCCTTGCAGTGTTGTTGTTGCAGGGGATGATCCATTCTGGAGTGG
 
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JMFF041N24+           TGGGAAATGCCATGGGAGAAGCAAATGTTTTTTTTTTCACATTGGTTTCA          
JMFF018H22+           TGGGAAATGCCATGGGAGAAGCAAATGTTTTTTTTTTCAC                    
JMFF044F13+           TGGGAAATGCCATGGGAGAAGCAAATGTTTTTTTTTTCACATTGGTTTCA          
JMFF014P11+           TGGGAAATGCCATGGGAGAAGCAAATGTTTTTTTTTTCACATTGGTTTCAAAGAATTTCT
JMFF033O03+           TGGGAAATGCCATGGGAGAAGCAAATGTTTTTTTTTTCACATTGGTTTCAAAGAATTTTT
                      ____________________________________________________________
consensus             TGGGAAATGCCATGGGAGAAGCAAATGTTTTTTTTTTCACATTGGTTTCAAAGAATTTTT
 
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JMFF014P11+           GGG                                                         
JMFF033O03+           GGGGAAGAAGATGATGATGATGATGATGGTTTGTGTATGGGAATCTTAGCTTAGCTTATC
                      ____________________________________________________________
consensus             GGGGAAGAAGATGATGATGATGATGATGGTTTGTGTATGGGAATCTTAGCTTAGCTTATC