| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018G11 | Sequence | 494 | 010252 (7) | ref|XP_009608869.1| | 8e-55 | PREDICTED: CAX-interacting protein 4-like, partial [Nicotiana tomentosiformis] | 682 | 010252 (7) | ref|XP_009794512.1| | 6e-64 | PREDICTED: CAX-interacting protein 4 [Nicotiana sylvestris] ref|XP_009794513.1| |
| JMFF031C06 | Sequence | 585 | 010252 (7) | ref|XP_009608869.1| | 9e-52 | PREDICTED: CAX-interacting protein 4-like, partial [Nicotiana tomentosiformis] | 834 | 022350 | |||
| JMFN035M12 | Sequence | 584 | 010252 (7) | ref|XP_009608869.1| | 1e-58 | PREDICTED: CAX-interacting protein 4-like, partial [Nicotiana tomentosiformis] | |||||
| JMFS095D02 | Sequence | 611 | 010252 (7) | ref|XP_009794512.1| | 9e-64 | PREDICTED: CAX-interacting protein 4 [Nicotiana sylvestris] ref|XP_009794513.1| | |||||
| JMSF041F09 | Sequence | 251 | 010252 (7) | ref|XP_001763613.1| | 5e-19 | predicted protein [Physcomitrella patens] gb|EDQ71503.1| predicted protein [Phys | 623 | 010252 (7) | ref|XP_009794512.1| | 1e-57 | PREDICTED: CAX-interacting protein 4 [Nicotiana sylvestris] ref|XP_009794513.1| |
This contig is upended
. : . : . : . : . : . :
rJMSF041F09- TCATTCTTGCTCTTTCCGGATGACTTCACCTTA
JMFS095D02+ TTCCGGATGACTTCACCTTA
rJMFF018G11- TTCTTGCTCTTTCCGGATGACTTCACCTTA
____________________________________________________________
consensus TCATTCTTGCTCTTTCCGGATGACTTCACCTTA
. : . : . : . : . : . :
rJMSF041F09- CGACTAATCTTCTTTGTGTTCTTCCCATACTTCTCAGCAATTGCTCTTTCAATTTCAGAG
JMFS095D02+ CGACTAATCTTCTNTGTGTTCTTCCCATACTTCTCAGCAATTGCTCTTTCAATTTCAGAG
JMFN035M12+ G
rJMFF018G11- CGACTAATCTTCTTTGTGTTCTTCCCATACTTCTCAGCAATTGCTCTTTCAATTTCAGAG
____________________________________________________________
consensus CGACTAATCTTCTTTGTGTTCTTCCCATACTTCTCAGCAATTGCTCTTTCAATTTCAGAG
. : . : . : . : . : . :
rJMSF041F09- TCGTACCCTGAATCTGAACTCTCACTCTCCTCTTCTTCACTACTCTCCTCACTCTCAGCA
JMFS095D02+ TCGTACCCTGAATCTGAACTCTCACTCTCCTCTTCTTCACTACTCTCCTCACTCTCAGCA
JMFN035M12+ TCGTACCCTGAATCTGAACTCTCACTCTCCTCTTCTTCACTACTCTCCTCACTCTCAGCA
rJMFF018G11- TCGTACCCTGAATCTGAACTCTCACTCTCCTCTTCTTCACTACTCTCCTCACTCTCAGCA
JMFF031C06+ GAACTCTCACTCTCCTCTTCTTCACTACTCTCCTCACTCTCAGCA
____________________________________________________________
consensus TCGTACCCTGAATCTGAACTCTCACTCTCCTCTTCTTCACTACTCTCCTCACTCTCAGCA
. : . : . : . : . : . :
rJMSF041F09- CTACCCTTCTTATCTCTGTTCCCCTTCCACTTCTCCAACCTAGACAAAACTGCTGCATC-
JMFS095D02+ CTACCCTTCTTATCTCTGTTCCCCTTCCACTTCTCCAACCTAGACAAAACTGCTGCATC-
JMFN035M12+ CTACCCTTCTTATCTCTGTTCCCCTTCCACTTCTCCAACCTAGACAAAACTGCTGCATC-
rJMFF018G11- CTACCCTTCTTATCTCTGTTCCCCTTCCACTTCTCCAACCTAGACAAAACTGCTGCATC-
JMFF018G11+ CCTAGACAAAACTGCTGCATC-
JMFF031C06+ CTACCCTTCTTATCTCTGTTCCCCTTCCACTTCTCCAACCTAGACAAAACTGCTGCATCG
____________________________________________________________
consensus CTACCCTTCTTATCTCTGTTCCCCTTCCACTTCTCCAACCTAGACAAAACTGCTGCATC-
. : . : . : . : . : . :
rJMSF041F09- GATTCCCTCCTCATCCTTGTCTTTACCACTGTCCTCCTTAACACTCAAGAAATTTCTACA
JMFS095D02+ GATTCCCTCCTCATCCTTGTCTTTACCACTGTCCTCCTTAACACTCAAGAAATTTCTACA
JMFN035M12+ GATTCCCTCCTCATCCTTGTCTTTACCACTGTCCTCCTTAACACTCAAGAAATTTCTACA
rJMFF018G11- GATTCCCTCCTCATCCTTGTCTTTACCACTGTCCTCCTTAACACTCAAGAAATTTCTACA
JMFF018G11+ GATTCCCTCCTCATCCTTGTCTTTACCACTGTCCTCCTTAACACTCAAGAAATTTCTACA
JMFF031C06+ GATTCCCTCCTCATCCTTGTCTTTACCACTGTCCTCCTTAACACTCAAGAAATTTCTACA
____________________________________________________________
consensus GATTCCCTCCTCATCCTTGTCTTTACCACTGTCCTCCTTAACACTCAAGAAATTTCTACA
. : . : . : . : . : . :
rJMSF041F09- CTGATAAGTTAGGTGCCCAACTCGCCCACACTTCTTGCATGATCCACGAGCCTCATCAGC
JMFS095D02+ CTGATAAGTTAGGTGCCCAACTCGCCCACACTTCTTGCATGATCCACGAGCCTCATCAGC
JMFN035M12+ CTGATAAGTTAGGTGCCCAACTCGCCCACACTTCTTGCATGATCCACGAGCCTCATCAGC
rJMFF018G11- CTGATAAGTTAGGTGCCCAACTCGCCCACACTTCTTGCATGATCCACGAGCCTCATCAGC
JMFF018G11+ CTGATAAGTTAGGTGCCCAACTCGCCCACACTTNTTGCATGATCCACGAGCCTCATCAGC
JMFF031C06+ CTGATAAGTTAGGTGCCCAACTCGCCCACACTTCTTGCATGATCCACGAGCCTCATCAGC
____________________________________________________________
consensus CTGATAAGTTAGGTGCCCAACTCGCCCACACTTCTTGCATGATCCACGAGCCTCATCAGC
. : . : . : . : . : . :
rJMSF041F09- ATTAGAACCAGTGATCCTAGCAAGCGCAAGCAAACCCTGAAAGTTGGCATAGGGATTATC
JMFS095D02+ ATTAGAACCAGTGATCCTAGCAAGCGCAAGCAAACCCTGAAAGTTGGCATAGGGATTATC
JMFN035M12+ ATTAGAACCAGTGATCCTAGCAAGCGCAAGCAAACCCTGAAAGTTGGCATAGGGATTATC
rJMFF018G11- ATTAGAACCAGTGATCCTAGCAAGCGCAAGCAAACCCTGAAAGTTGGCATAGGGATTATC
JMFF018G11+ ATTAGAACCAGTGATCCTAGCAAGCGCAAGCAAACCCTGAAAGTTGGCATAGGGATTATC
JMFF031C06+ ATTAGAACCAGTGATCCTAGCAAGCGCAAGCAAACCCTGAAAGTTGGCATAGGGATTATC
____________________________________________________________
consensus ATTAGAACCAGTGATCCTAGCAAGCGCAAGCAAACCCTGAAAGTTGGCATAGGGATTATC
. : . : . : . : . : . :
rJMSF041F09- CGGCTCGGCAGCAGATTTTGGCGCANACTTCTTCNAATCATCCTTGTTGGGTGCATATGG
JMFS095D02+ CGGCTCGGCAGCAGATTTTGGCGCAGACTTCTTCGAATCATCCTTGTTGGGTGCATATGG
JMFN035M12+ CGGCTCGGCAGCAGATTTTGGCGCAGACTTCTTCGAATCATCCTTGTTGGGTGCATATGG
rJMFF018G11- CGGCTCGGCAGCAGATTTTGGCGCAGACTTCTTCGAATCATCCTTGTTGGGTGCATATGG
JMFF018G11+ CGGCTCGGCAGCAGATTTTGGCGCAGACTTCTTCGAATCATCCTTGTTGGGTGCATATGG
JMSF041F09+ TGGGTGCATATGG
JMFF031C06+ CGGCTCGGCAGCAGATTTTGGCGCAGACTTCTTCGAATCATCCTTGTTGGGTGCATATGG
____________________________________________________________
consensus CGGCTCGGCAGCAGATTTTGGCGCAGACTTCTTCGAATCATCCTTGTTGGGTGCATATGG
. : . : . : . : . : . :
rJMSF041F09- GTCATACCCAATTGCACTTTGNCAGATACCATGGGTCTGTAGGGCAGCACTACTGTGCAC
JMFS095D02+ GTCATACCCAATTGCACTTTGCCAGATACCATGGGTCTGTAGGGCAGCACTACTGTGCAC
JMFN035M12+ GTCATACCCAATTGCACTTTGCCAGATACCATGGGTCTGTAGGGCAGCACTACTGTGCAC
rJMFF018G11- GTCATACCCAATTGCACTTTGCCAGATACCATGGGTCTGTAGGGCAGCACTACTGTGCAC
JMFF018G11+ GTCATACCCAATTGCACTTTGCCAGATACCATGGGTCTGTAGGGCAGCACTACTGTGCAC
JMSF041F09+ GTCATACCCAATTGCACTTTGCCAGATACCATGGGTNTGTAGGGCAGCACTACTGTGCAC
JMFF031C06+ GTCATACCCAATTGCACTTTGCCAGATACCATGGGTCTGTAGGGCAGCACTACTGTGCAC
____________________________________________________________
consensus GTCATACCCAATTGCACTTTGCCAGATACCATGGGTCTGTAGGGCAGCACTACTGTGCAC
. : . : . : . : . : . :
rJMSF041F09- CCGATTGTTCGCCGGCATGCGAACTCTTCCTGCTGTCGCCGGCATTTTGATATTTTATCT
JMFS095D02+ CCGATTGTTCGCCGGCATGCGAACTCTTCCTGCTGTCGCCGGCATTTTGATATTTTATCT
JMFN035M12+ CCGATTGTTCGCCGGCATGCGAACTCTTCCTGCTGTCGCCGGCATTTTGATATTTTATCT
rJMFF018G11- CCGATTGTTCGCCGGCATGCGAACTCTTCCTGCTGTCGCCGGCATTTTGATATTTTATCT
JMFF018G11+ CCGATTGTTCGCCGGCATGCGAACTCTTCCTGCTGTCGCCGGCATTTTGATATTTTATCT
JMSF041F09+ CCGATTGTTCGCCGGCATGCGAACTCTTCCTGCTGTCGCCGGCATTTTGATATTTTATCT
JMFF031C06+ CCGATTGTTCGCCGGCATGCGAACTCTTCCTGCTGTCGCCGGCATTTTGATATTTTATCT
____________________________________________________________
consensus CCGATTGTTCGCCGGCATGCGAACTCTTCCTGCTGTCGCCGGCATTTTGATATTTTATCT
. : . : . : . : . : . :
rJMSF041F09- AAAACCCTTGGCTGACNAGTAAACTGAGAGAGCTGTGATCAGATCAACCGA
JMFS095D02+ AAAACCCTTGGCTGACAAGTAAACTGAGAGAGCTGTGATCAGATCAACCGAC
JMFN035M12+ AAAACCCTTGGCTGACAAGTAAACTGAGAGAGCTGTGATCAGATCAACCGACTATGATGA
rJMFF018G11- AAAACCCTTGGCTGACAAGTAAACTGAGAGAGCTGTGATCAGATCAACCGACTATGATGA
JMFF018G11+ AAAACCCTTGGCTGACAAGTAAACTGAGAGAGCTGTGATCAGATCAACCGACTATGATGA
JMSF041F09+ AAAACCCTTGGCTGACAAGTAAACTGAGAGAGCTGTGATCAGATCAACCGACTATGATGA
JMFF031C06+ AAAACCCTTGGCTGACAAGTAAACTGAGAGAGCTGTGATCAGATCAACCGACTATGATGA
____________________________________________________________
consensus AAAACCCTTGGCTGACAAGTAAACTGAGAGAGCTGTGATCAGATCAACCGACTATGATGA
. : . : . : . : . : . :
JMFN035M12+ TCAAACGCCGAAACACGAGAGCGAAGGAGACGACGAGGAACTGA
rJMFF018G11- TCAAACGCCGAAACACGAGAGCGAAGGAGACGACGAGGAACTGAGGAAGCAAT
JMFF018G11+ TCAAACGCCGAAACACGAGAGCGAAGGAGACGACGAGGAACTGAGGAAGCAAT
JMSF041F09+ TCAAACGCCGAAACACGAGAGCGAAGGAGACGACGAGGAACTGAGGAAGCAAT
JMFF031C06+ TCAAACGCCGAAACACGAGAGCGAAGGAGACGACGAGGAACTGAGGAAGCAATGGAATTT
____________________________________________________________
consensus TCAAACGCCGAAACACGAGAGCGAAGGAGACGACGAGGAACTGAGGAAGCAATGGAATTT