Contig 010251:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030M14Sequence431010251 (3)ref|XP_009785838.1|2e-44PREDICTED: DNA repair and recombination protein RAD54 [Nicotiana sylvestris]
JMFS071A04Sequence622010251 (3)emb|CDO97168.1|1e-77unnamed protein product [Coffea canephora]
JMFS094D05Sequence589010251 (3)emb|CDO97168.1|4e-65unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS071A04+                 GAAACACAATCAAACATGAACTGGACACCTTCTCTTTGATGTGGTCGGAGGTAC
JMFS094D05+                                                                  GGTAC
                      ____________________________________________________________
consensus                   GAAACACAATCAAACATGAACTGGACACCTTCTCTTTGATGTGGTCGGAGGTAC
 
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JMFS071A04+           TTAACAAGTAAAGGTTCCACTGCTATAGGTTTTGAATCACAGCCTTCCTCCCCAAATCCT
JMFS094D05+           TTAACAAGTAAAGGTTCCACTGCTATAGGTTTTGAATCACAGCCTTCCTCCCCAAATCCT
                      ____________________________________________________________
consensus             TTAACAAGTAAAGGTTCCACTGCTATAGGTTTTGAATCACAGCCTTCCTCCCCAAATCCT
 
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JMFS071A04+           TCAGGCTGCCACAACAGCAATGGTTCCACATCTGGTGGCAGATATATCTCTTCTTCAGGC
JMFS094D05+           TCAGGCTGCCACAACAGCAATGGTTCCACATCTGGTGGCAGATATATCTCTTCTTCAGGC
                      ____________________________________________________________
consensus             TCAGGCTGCCACAACAGCAATGGTTCCACATCTGGTGGCAGATATATCTCTTCTTCAGGC
 
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JMFS071A04+           ACATCTTTATGAGCAGTCTCAAGGACAGTTACCCTGTTCGTGATTGCAACCAAAGCTGGC
JMFS094D05+           ACATCTTTATGAGCAGTCTCAAGGACAGTTACCCTGTTCGTGATTGCAACCAAAGCTGGC
JMFF030M14+                                                            CCAAAGCTGGC
                      ____________________________________________________________
consensus             ACATCTTTATGAGCAGTCTCAAGGACAGTTACCCTGTTCGTGATTGCAACCAAAGCTGGC
 
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JMFS071A04+           CTATTGGACCCCCATGGCACAAACCTTTTGCGTGCCCAGAGACGGCGTGCCAGATGTTCA
JMFS094D05+           CTATTGGACCCCCATGGCACAAACCTTTTGCGTGCCCAGAGACGGCGTGCCAGATGTTCA
JMFF030M14+           CTATTGGACCCCCATGGCACAAACCTTTTGCGTGCCCAGAGACGGCGTGCCAGATGTTCA
                      ____________________________________________________________
consensus             CTATTGGACCCCCATGGCACAAACCTTTTGCGTGCCCAGAGACGGCGTGCCAGATGTTCA
 
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JMFS071A04+           TTGTTACTACTATAACCATTTGAGCTCGGAGGTTTAAAAGGCTTTCTGACGTTGACAGCT
JMFS094D05+           TTGTTACTACTATAACCATTTGAGCTCGGAGGTTTAAAAGGCTTTCTGACGTTGACAGCT
JMFF030M14+           TTGTTACTACTATAACCATTTGAGCTCGGAGGTTTAAAAGGCTTTCTGACGTTGACAGCT
                      ____________________________________________________________
consensus             TTGTTACTACTATAACCATTTGAGCTCGGAGGTTTAAAAGGCTTTCTGACGTTGACAGCT
 
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JMFS071A04+           GCATCAGTTACTGAATAGACTCGTGGAAGTATTGACTGTCTTCTCACTTCAAGGTTTCCC
JMFS094D05+           GCATCAGTTACTGAATAGACTCGTGGAAGTATTGACTGTCTTCTCACTTCAAGGTTTCCC
JMFF030M14+           GCATCAGTTACTGAATAGACTCGTGGAAGTATTGACTGTCTTCTCACTTCAAGGTTTCCC
                      ____________________________________________________________
consensus             GCATCAGTTACTGAATAGACTCGTGGAAGTATTGACTGTCTTCTCACTTCAAGGTTTCCC
 
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JMFS071A04+           CTGACTAAAGCGGCCACATTTTCCGACTTCCGATCTTCCGGACTGCAGCGGAGATTGGAT
JMFS094D05+           CTGACTAAAGCGGCCACATTTTCCGACTTCCGATCTTCCGGACTGCAGCGGAGATTGGAT
JMFF030M14+           CTGACTAAAGCGGCCACATTTTCCGACTTCCGATCTTCCGGACTGCAGCGGAGATTGGAT
                      ____________________________________________________________
consensus             CTGACTAAAGCGGCCACATTTTCCGACTTCCGATCTTCCGGACTGCAGCGGAGATTGGAT
 
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JMFS071A04+           GTTTGAGCTCCATGGCCATCGTCTTCGTCGCCGCTATTACAATTGTAATCGAGGTCGTCC
JMFS094D05+           GTTTGAGCTCCATGGCCATCGTCTTCGTCGCCGCTATTACAATTGTAATCGAGGTCGTCC
JMFF030M14+           GTTTGAGCTCCATGGCCATCGTCTTCGTCGCCGCTATTACAATTGTAATCGAGGTCGTCC
                      ____________________________________________________________
consensus             GTTTGAGCTCCATGGCCATCGTCTTCGTCGCCGCTATTACAATTGTAATCGAGGTCGTCC
 
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JMFS071A04+           TCGTCATTGTCTGACTCAGAGATGAACTCGACACTCGAATCGCTTGGTTCTGAAGCGGAA
JMFS094D05+           TCGTCATTGTCTGACTCAGAGATGAACTCGACACTCGAATCGCTTGGTTCTGAAGCGGAA
JMFF030M14+           TCGTCATTGTCTGACTCAGAGATGAACTCGACACTCGAATCGCTTGGTTCTGAAGCGGAA
                      ____________________________________________________________
consensus             TCGTCATTGTCTGACTCAGAGATGAACTCGACACTCGAATCGCTTGGTTCTGAAGCGGAA
 
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JMFS071A04+           AGAGCCTCATCTTCATCGTCCATTTGAC                                
JMFS094D05+           AGAGCCTCATCTTCATCGTCCATTTGACGACCTCCTGTGCTTCG                
JMFF030M14+           AGAGCCTCATCTTCATCGTCCATTTGACGACCTCCTGTGCTTCGCTGAGTACTTGAGTTC
                      ____________________________________________________________
consensus             AGAGCCTCATCTTCATCGTCCATTTGACGACCTCCTGTGCTTCGCTGAGTACTTGAGTTC