Contig 010249:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012F20Sequence467010249 (5)gb|EYU24754.1|2e-51hypothetical protein MIMGU_mgv1a0035152mg, partial [Erythranthe guttata]
JMFF020B06Sequence553010249 (5)gb|EYU24754.1|5e-51hypothetical protein MIMGU_mgv1a0035152mg, partial [Erythranthe guttata]
JMFF020B10Sequence517010249 (5)gb|EYU24754.1|1e-41hypothetical protein MIMGU_mgv1a0035152mg, partial [Erythranthe guttata]129024342
JMFF030B07Sequence402010249 (5)gb|KJB37591.1|2e-18hypothetical protein B456_006G212500 [Gossypium raimondii]
JMFF038K07Sequence479010249 (5)gb|KJB37591.1|2e-16hypothetical protein B456_006G212500 [Gossypium raimondii]903006385 (80)ref|XP_009114489.1|1e-131PREDICTED: polyubiquitin-like [Brassica rapa]

Alignment

This contig is upended


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JMFF020B10+                                                         CTTTCACTTGAAAC
JMFF020B06+                     TGAGGGAAGGGAAGTAAAAGAAACTCCCAATCTGGTCTTTCACTTGAAAC
JMFF012F20+                       AGGGAAGGGAAGTAAAAGAAACTCCCAATCTGGTCTTTCACTTGAAAC
                      ____________________________________________________________
consensus                       TGAGGGAAGGGAAGTAAAAGAAACTCCCAATCTGGTCTTTCACTTGAAAC
 
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JMFF020B10+           TGATAAGTCCAGTTCCATTTTGCAGGTATTGGGCAGTTTGTACCCAACACCCCATCTTGC
JMFF020B06+           TGATAAGTCCAGTTCCATTTTGCAGGTATTGGGCAGTTTGTACCCAACACCCCATCTTGC
JMFF012F20+           TGATAAGTCCAGTTCCATTTTGCAGGTATTGGGCAGTTTGTACCCAACACCCCATCTTGC
                      ____________________________________________________________
consensus             TGATAAGTCCAGTTCCATTTTGCAGGTATTGGGCAGTTTGTACCCAACACCCCATCTTGC
 
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JMFF020B10+           CAAGAACTCTTCCTCTGCTGAACACCAGACCAGTGCATGAGTAGTTCTTCATCCAATTTG
JMFF020B06+           CAAGAACTCTTCCTCTGCTGAACACCAGACCAGTGCATGAGTAGTTCTTCATCCAATTTG
JMFF012F20+           CAAGAACTCTTCCTCTGCTGAACACCAGACCAGTGCATGAGTAGTTCTTCATCCAATTTG
JMFF038K07+                                       ACCAGTGCATGAGTAGTTCTTCATCCAATTTG
JMFF030B07+                             TGAACACCAGACCAGTGCATGAGTAGTTCTTCATCCAATTTG
                      ____________________________________________________________
consensus             CAAGAACTCTTCCTCTGCTGAACACCAGACCAGTGCATGAGTAGTTCTTCATCCAATTTG
 
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JMFF020B10+           TTCTTTACATTAACAACAACATTGTAGTTAGTAGTTACATTGATAACAGGCCCTGGAAAT
JMFF020B06+           TTCTTTACATTAACAACAACATTGTAGTTAGTAGTTACATTGATAACAGGCCCTGGAAAT
JMFF012F20+           TTCTTTACATTAACAACAACATTGTAGTTAGTAGTTACATTGATAACAGGCCCTGGAAAT
JMFF038K07+           TTCTTTACATTAACAACAACATTGTAGTTAGTAGTTACATTGATAACAGGCCCTGGAAAT
JMFF030B07+           TTCTTTACATTAACAACAACATTGTAGTTAGTAGTTACATTGATAACAGGCCCTGGAAAT
                      ____________________________________________________________
consensus             TTCTTTACATTAACAACAACATTGTAGTTAGTAGTTACATTGATAACAGGCCCTGGAAAT
 
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JMFF020B10+           TTCCCATTAACAGCAATAACCTGTTGTTCCACACCAAGAGGAGAAGCAGTAATGTAGGAG
JMFF020B06+           TTCCCATTAACAGCAATAACCTGTTGTTCCACACCAAGAGGAGAAGCAGTAATGTAGGAG
JMFF012F20+           TTCCCATTAACAGCAATAACCTGTTGTTCCACACCAAGAGGAGAAGCAGTAATGTAGGAG
JMFF038K07+           TTCCCATTAACAGCAATAACCTGTTGTTCCACACCAAGAGGAGAAGCAGTAATGTAGGAG
JMFF030B07+           TTCCCATTAACAGCAATAACCTGTTGTTCCACACCAAGAGGAGAAGCAGTAATGTAGGAG
                      ____________________________________________________________
consensus             TTCCCATTAACAGCAATAACCTGTTGTTCCACACCAAGAGGAGAAGCAGTAATGTAGGAG
 
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JMFF020B10+           ACCTCAAAGTCATAGAAAGCAAATGGATCTTC                            
JMFF020B06+           ACCTCAAAGTCATAGAAAGCAAATGGATCTTC                            
JMFF012F20+           ACCTCAAAGTCATAGAAAGCAAATGGATCTTCAGCTGAACACAACCCCAGCAGCAACACA
JMFF038K07+           ACCTCAAAGTCATAGAAAGCAAATGGATCTTCAGCTGAACACAACCCCAGCAGCAACACA
JMFF030B07+           ACCTCAAAGTCATAGAAAGCAAATGGATCTTCAGCTGAACACAACCCCAGCAGCAACACA
                      ____________________________________________________________
consensus             ACCTCAAAGTCATAGAAAGCAAATGGATCTTCAGCTGAACACAACCCCAGCAGCAACACA
 
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JMFF012F20+           GAAATGCAGAGCAGCATTGACAGAGTAGAGGCCATTCTTGAATTGGAAGCTCAAAGTGCA
JMFF038K07+           GAAATGCAGAGCAGCATTGACAGAGTAGAGGCCATTCTTGAATTGGAAGCTCAAAGTGCA
JMFF030B07+           GAAATGCAGAGCAGCATTGACAGAGTAGAGGCCATTCTTGAATTGGAAGCTCAAAGTGCA
                      ____________________________________________________________
consensus             GAAATGCAGAGCAGCATTGACAGAGTAGAGGCCATTCTTGAATTGGAAGCTCAAAGTGCA
 
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JMFF012F20+           AAGTGCAAAGTTACAAGCCAGAAAAACAAGAAAATTTGCACTTTTTTTCTTACATTAT  
JMFF038K07+           AAGTGCAAAGTTACAAGCCAGAAAAACAAGAAAATTTGCACTTTTTTTCTTACATTATAG
JMFF030B07+           AAGTGCAAAGTTACAAGCCAGAAAAACAAGAAAATTTGCACTTTTTTTCTTACATTATAG
                      ____________________________________________________________
consensus             AAGTGCAAAGTTACAAGCCAGAAAAACAAGAAAATTTGCACTTTTTTTCTTACATTATAG
 
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JMFF038K07+           ACAGGAGGGGGAAAGGAAATGGAAAGATTATGGAGGGAGGAACAAAAAGCACAGTAT   
JMFF030B07+           ACAGGAGGGGGAAAGGAAATGGAAAGATTATGGAGGGAGGAACAAAAAGCACAGTATGTA
                      ____________________________________________________________
consensus             ACAGGAGGGGGAAAGGAAATGGAAAGATTATGGAGGGAGGAACAAAAAGCACAGTATGTA