Contig 010239:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007D02Sequence242010239 (3)ref|XP_010262557.1|1e-10PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nelumbo nucifera]749013623 (4)
JMFF026P11Sequence470010239 (3)ref|XP_010262557.1|3e-27PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nelumbo nucifera]728013623 (4)
JMSF015I20Sequence442010239 (3)ref|XP_010262557.1|2e-27PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nelumbo nucifera]782013623 (4)

Alignment

This contig is upended


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JMFF007D02+                                                             ACAACTCAAA
                      ____________________________________________________________
consensus                                                               ACAACTCAAA
 
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JMFF007D02+           CCCCCTCCCTCCTCCACCCCCTTCGCCGCCGCCATCCGACGGCCCTCGGAGAACAATGAC
JMSF015I20+                      CTCCACCCCCTTNGCCGCCGCCATCCGACGGCCCTCGGAGAACAATGAC
JMFF026P11+                      CTCCACCCCCTTCGCCGCCGCCATCCGACGGCCCTCGGAGAACAATGAC
                      ____________________________________________________________
consensus             CCCCCTCCCTCCTCCACCCCCTTCGCCGCCGCCATCCGACGGCCCTCGGAGAACAATGAC
 
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JMFF007D02+           GGGATTAAACGGCGAACGGTCCCAACCATTCCTTCTGCTCCTCCGGAGTCGCGGACTCGA
JMSF015I20+           GGGATTAAACGGCGAACGGTCCCAACCATTCCTTCTGCTCCTCCGGAGTCGCGGACTCGA
JMFF026P11+           GGGATTAAACGGCGAACGGTCCCAACCATTCCTTCTGCTCCTCCGGAGTCGCGGACTCGA
                      ____________________________________________________________
consensus             GGGATTAAACGGCGAACGGTCCCAACCATTCCTTCTGCTCCTCCGGAGTCGCGGACTCGA
 
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JMFF007D02+           CCCGGAGCTCCGATCCAAATTCCGCATCATGAACATCGCCGACGACGGGAATCTCCGCCG
JMSF015I20+           CCCGGAGCTCCGATCCAAATTCCGCATCATGAACATCGCCGACGACGGGAATCTCCGCCG
JMFF026P11+           CCCGGAGCTCCGATCCAAATTCCGCATCATGAACATCGCCGACGACGGGAATCTCCGCCG
                      ____________________________________________________________
consensus             CCCGGAGCTCCGATCCAAATTCCGCATCATGAACATCGCCGACGACGGGAATCTCCGCCG
 
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JMFF007D02+           TTGAGAATCCAAGGCGGAGGATCGGTTCGAATTGTCGATTTCCTCCACAAAC        
JMSF015I20+           TTGAGAATCCAAGGCGGAGGATCGGTTCGAATTGTCGATTTCCTCCACAAACCCGCTATT
JMFF026P11+           TTGAGAATCCAAGGCGGAGGATCGGTTCGAATTGTCGATTTCCTCCACAAACCCGCTATT
                      ____________________________________________________________
consensus             TTGAGAATCCAAGGCGGAGGATCGGTTCGAATTGTCGATTTCCTCCACAAACCCGCTATT
 
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JMSF015I20+           GCAATCCGGACACGCTACCGAACCCTGGCTCCAAACCCTCACAAACCTATTGCATCTGTA
JMFF026P11+           GCAATCCGGACACGCTACCGAACCCTGGCTCCAAACCCTCACAAACCTATTGCATCTGTA
                      ____________________________________________________________
consensus             GCAATCCGGACACGCTACCGAACCCTGGCTCCAAACCCTCACAAACCTATTGCATCTGTA
 
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JMSF015I20+           GCACCAATACGTTGAAGGCATCGACATCTCTATATATAGGATCTAAAATTCACGATAAAT
JMFF026P11+           GCACCAATACGTTGAAGGCATCGACATCTCTATATATAGGATCTAAAATTCACGATAAAT
                      ____________________________________________________________
consensus             GCACCAATACGTTGAAGGCATCGACATCTCTATATATAGGATCTAAAATTCACGATAAAT
 
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JMSF015I20+           GGATACGAAAAATCAAATCTTTGGATGAAAAGATTGTGAAAATTTGAACCTTTTTTTGTG
JMFF026P11+           GGATACGAAAAATCAAATCTTTGGATGAAAAGATTGTGAAAATTTGAACCTTTTTTTGTG
                      ____________________________________________________________
consensus             GGATACGAAAAATCAAATCTTTGGATGAAAAGATTGTGAAAATTTGAACCTTTTTTTGTG
 
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JMSF015I20+           AATATTCCGGCGGGTTACACACGGAGGAGGCT                            
JMFF026P11+           AATATTCCGGCGGGTTACACACGGAGGAGGCTGAAGGAAGGGTGTGAGTTGTGAGAGACC
                      ____________________________________________________________
consensus             AATATTCCGGCGGGTTACACACGGAGGAGGCTGAAGGAAGGGTGTGAGTTGTGAGAGACC