Contig 010238:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026H16Sequence542010238 (2)gb|EYU20858.1|3e-22hypothetical protein MIMGU_mgv1a010301mg [Erythranthe guttata]684010238 (2)ref|XP_007010765.1|3e-38Metacaspase 9 [Theobroma cacao] gb|EOY19575.1| Metacaspase 9 [Theobroma cacao]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026H16-                                                                     T
                      ____________________________________________________________
consensus                                                                        T
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026H16-          AATCCATGACAAAGTGCCAACGTTTAGCGCATGCACACACCATCAAATAATGTATAGAGC
                      ____________________________________________________________
consensus             AATCCATGACAAAGTGCCAACGTTTAGCGCATGCACACACCATCAAATAATGTATAGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026H16-          ACTGGTTGCTTAACTTATTACAAAAACACCACATGCAGATCGATTAGGTCGGGCTATGAT
                      ____________________________________________________________
consensus             ACTGGTTGCTTAACTTATTACAAAAACACCACATGCAGATCGATTAGGTCGGGCTATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026H16-          CCGATCAAGATTGGCGAAGAAAAACTGCATCGGCATTTCCATCACAACAATAAAGACAAG
                      ____________________________________________________________
consensus             CCGATCAAGATTGGCGAAGAAAAACTGCATCGGCATTTCCATCACAACAATAAAGACAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026H16-          GATGCTGTGGGAGTTGTAATTTCTTGATAACCTTCCTGGCCAACAAAACCACTTCCCTAT
JMFF026H16+                                                                     AT
                      ____________________________________________________________
consensus             GATGCTGTGGGAGTTGTAATTTCTTGATAACCTTCCTGGCCAACAAAACCACTTCCCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026H16-          TACTAAGAGGACCAGGATGCTCCTTCAACACAGTCTCCACGGCATAGCTGAACGCCCCAC
JMFF026H16+           TACTAAGAGGACCAGGATGCTCCTTCAACACAGTCTCCACGGCATAGCTGAACGCCCCAC
                      ____________________________________________________________
consensus             TACTAAGAGGACCAGGATGCTCCTTCAACACAGTCTCCACGGCATAGCTGAACGCCCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026H16-          GGGGCGGCTGCCCTTCTTTGGTGGGCACGTCTCGGCTCACCTCGTTAGCCTGACACCCAC
JMFF026H16+           GGGGCGGCTGCCCTTCTTTGGTGGGCACGTCTCGGCTCACCTCGTTAGCCTGACACCCAC
                      ____________________________________________________________
consensus             GGGGCGGCTGCCCTTCTTTGGTGGGCACGTCTCGGCTCACCTCGTTAGCCTGACACCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026H16-          TCAGCAAGATCCCCTCGTCCGCCTCGAGAGGCTCCGGCCGCTTGTCGGCCTGCTTGAAGC
JMFF026H16+           TCAGCAAGATCCCCTCGTCCGCCTCGAGAGGCTCCGGCCGCTTGTCGGCCTGCTTGAAGC
                      ____________________________________________________________
consensus             TCAGCAAGATCCCCTCGTCCGCCTCGAGAGGCTCCGGCCGCTTGTCGGCCTGCTTGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026H16-          TGAGGCTGGCGTGGTCGCCGAAGAGCTCCAGGTGGTGCGGCGCGATATCCCGTGCGGCTA
JMFF026H16+           TGAGGCTGGCGTGGTCGCCGAAGAGCTCCAGGTGGTGCGGCGCGATATCCCGTGCGGCTA
                      ____________________________________________________________
consensus             TGAGGCTGGCGTGGTCGCCGAAGAGCTCCAGGTGGTGCGGCGCGATATCCCGTGCGGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026H16-          AGTTTGTGATGGACGAGAGATGGCGCAAGAGGAATTCGAAAGGAACGGATTTTGCTTGCG
JMFF026H16+           AGTTTGTGATGGACGAGAGATGGCGCAAGAGGAATTCGAAAGGAACGGATTTTGCTTGCG
                      ____________________________________________________________
consensus             AGTTTGTGATGGACGAGAGATGGCGCAAGAGGAATTCGAAAGGAACGGATTTTGCTTGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026H16-          CGTTTGGCGGCGGTGTGGGGATTTCTTCGCCAACACATCATTGCGGCATCCATTCAACTT
JMFF026H16+           CGTTTGGCGGCGGTGTGGGGATTTCTTCGCCAACACATCATTGCGGCATCCATTCAACTT
                      ____________________________________________________________
consensus             CGTTTGGCGGCGGTGTGGGGATTTCTTCGCCAACACATCATTGCGGCATCCATTCAACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026H16-          GAATACTGCGTTGTTCTCGTAATTGCAGCCCACCAAGACCGCCATCCTCTTCATGCTCTT
JMFF026H16+           GAATACTGCGTTGTTCTCGTAATTGCAGCCCACCAAGACCGCCATCCTCTTCATGCTCTT
                      ____________________________________________________________
consensus             GAATACTGCGTTGTTCTCGTAATTGCAGCCCACCAAGACCGCCATCCTCTTCATGCTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF026H16-          CTTCTGCTCTGTTTCCATTTGGA                                     
JMFF026H16+           CTTCTGCTCTGTTTCCATTTGGACCTGGCCTGGGCGATGCAACAACCACTACTTCAAACT
                      ____________________________________________________________
consensus             CTTCTGCTCTGTTTCCATTTGGACCTGGCCTGGGCGATGCAACAACCACTACTTCAAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF026H16+           AATCCCAGTCGTCTCTGATTCTTGGAAGTGAACTTAAGCTTCTCTATAATGTAATATTCT
                      ____________________________________________________________
consensus             AATCCCAGTCGTCTCTGATTCTTGGAAGTGAACTTAAGCTTCTCTATAATGTAATATTCT