Contig 010229:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF035K19+                                          TTTTTTTTTTGATGATAGCAGGAAATCAA
                      ____________________________________________________________
consensus                                            TTTTTTTTTTGATGATAGCAGGAAATCAA
 
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JMSF035K19+           ATCGCCAACTTTCTCTTCAGCGCACATTATCACCTCTTTAACTCATGAAAATGGAAGAAA
rJMSF035K19-                             GCGCACATTATCACCTCTTTAACTCATGAAAATGGAAGAAA
rJMFF024C08-                                             CTTTAACTCATGAAAATGGAAGAAA
                      ____________________________________________________________
consensus             ATCGCCAACTTTCTCTTCAGCGCACATTATCACCTCTTTAACTCATGAAAATGGAAGAAA
 
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JMSF035K19+           CTTTAATACATCAATTACTAAACTTTCCTTTTTTAAAAAAGGATAAAAGCACTCATTATG
rJMSF035K19-          CTTTAATACATCAATTACTAAACTTTCCTTTTTTAAAAAAGGATAAAAGCACTCATTATG
rJMFF024C08-          CTTTAATACATCAATTACTAACCTTTCCTTTTTTAAAAAAGGATAAAAGCACTCATTATG
rJMSF007H22-          CTTTAATACATCAATTACTAACCTTTCCTTTTTTAAAAAAGGATAAAAGCACTCATTATG
                      ____________________________________________________________
consensus             CTTTAATACATCAATTACTAAACTTTCCTTTTTTAAAAAAGGATAAAAGCACTCATTATG
 
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JMSF035K19+           GTAGACAAGTATTTTATAATAAGTACAGGTATACTGTGATATTAAGGAAGCATTTAAAAC
rJMSF035K19-          GTAGACAAGTATTTTATAATAAGTACAGGTATACTGTGATATTAAGGAAGCATTTAAAAC
rJMFF024C08-          GTAGACAAGTATTTTATAATAAGTACAGGTATACTGTGATATTAAGGAAGCATTTAAAAC
rJMSF007H22-          GTAGACAAGTATTTTATAATAAGTACAGGTATACTGTGATATTAAGGAAGCATTTAAAAC
                      ____________________________________________________________
consensus             GTAGACAAGTATTTTATAATAAGTACAGGTATACTGTGATATTAAGGAAGCATTTAAAAC
 
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JMSF035K19+           TTCTCTATCAGATTGCATCAGCTAGGAAAGGGCATAAAAGTGGCAGTAAGCTCCATGGGT
rJMSF035K19-          TTCTCTATCAGATTGCATCAGCTAGGAAAGGGCATAAAAGTGGCAGTAAGCTCCATGGGT
rJMFF024C08-          TTCTCTATCAGATTGCATCAGCTAGGAAAGGGCATAAAAGTGGCAGTAAGCTCCATGGGT
rJMSF007H22-          TTCTCTATCAGATTGCATCAGCTAGGAAAGGGCATAAAAGTGGCAGTAAGCTCCATGGGT
                      ____________________________________________________________
consensus             TTCTCTATCAGATTGCATCAGCTAGGAAAGGGCATAAAAGTGGCAGTAAGCTCCATGGGT
 
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JMSF035K19+           ATCAACCAATACAAGCCATATAAGCTCACATGCTAGTGAAGCCACAACCTTCACATAGTA
rJMSF035K19-          ATCAACCAATACAAGCCATATAAGCTCACATGCTAGTGAAGCCACAACCTTCACATAGTA
rJMFF024C08-          ATCAACCAATACAAGCCATATAAGCTCACATGCTAGTGAAGCCACAACCTTCACATAGTA
rJMSF007H22-          ATCAACCAATACAAGCCATATAAGCTCACATGCTAGTGAAGCCACAACCTTCACATAGTA
                      ____________________________________________________________
consensus             ATCAACCAATACAAGCCATATAAGCTCACATGCTAGTGAAGCCACAACCTTCACATAGTA
 
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JMSF035K19+           AGCCATGCCATCCAATAGAATTCCCTAACGATTACTCAGAAATCTGATTAAGAGGATTGT
rJMSF035K19-          AGCCATGCCATCCAATAGAATTCCCTAACGATTACTCAGAAATCTGATTAAGAGGATTGT
rJMFF024C08-          AGCCATGCCATCCAATAGAATTCCCTAACGATTACTCAGAAATCTGATTAAGAGGATTGT
rJMSF007H22-          AGCCATGCCATCCAATAGAATTCCCTAACGATTACTCAGAAATCTGATTAAGAGGATTGT
                      ____________________________________________________________
consensus             AGCCATGCCATCCAATAGAATTCCCTAACGATTACTCAGAAATCTGATTAAGAGGATTGT
 
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JMSF035K19+           CAGGAGATTTCTTCCATAGCTTCCAAATCAAGTCTTTGTACTGTGTGTGTGTGAGCCCTG
rJMSF035K19-          CAGGAGATTTCTTCCATAGCTTCCAAATCAAGTCTTTGTACTGTGTGTGTGTGAGCCCTG
rJMFF024C08-          CAGGAGATTTCTTCCATAGCTTCCAAATCAAGTCTTTGTACTGTGTGTGTGTGAGCCCTG
rJMSF007H22-          CAGGAGATTTCTTCCATAGCTTCCAAATCAAGTCTTTGTACTGTGTGTGTGTGAGCCCTG
                      ____________________________________________________________
consensus             CAGGAGATTTCTTCCATAGCTTCCAAATCAAGTCTTTGTACTGTGTGTGTGTGAGCCCTG
 
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JMSF035K19+           GTTTCTCTTCCTTGAGCCTCCTAAGCTCAGCTTCCTCAAAAGCCTTGAAGGATGCCTTGA
rJMSF035K19-          GTTTCTCTTCCTTGAGCCTCCTAAGCTCAGCTTCCTCAAAAGCCTTGAAGGATGCCTTGA
rJMFF024C08-          GTTTCTCTTCCTTGAGCCTCCTAAGCTCAGCTTCCTCAAAAGCCTTGAAGGATGCCTTGA
rJMSF007H22-          GTTTCTCTTCCTTGAGCCTCCTAAGCTCAGCTTCCTCAAAAGCCTTGAAGGATGCCTTGA
                      ____________________________________________________________
consensus             GTTTCTCTTCCTTGAGCCTCCTAAGCTCAGCTTCCTCAAAAGCCTTGAAGGATGCCTTGA
 
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JMSF035K19+           GTCTCTTCTCAGGATGCTTATC                                      
rJMSF035K19-          GTCTCTTCTCAGGATGCTTATC                                      
rJMFF024C08-          GTCTCTTCTCAGGATGCTTATCCACAGGCAAATTATCTGCTGCTATCGTCATATGAGCAA
rJMSF007H22-          GTCTCTTCTCAGGATGCTTATCCACAGGCAAATTATCTGCTGCTATCGTCATATGAGCAA
                      ____________________________________________________________
consensus             GTCTCTTCTCAGGATGCTTATCCACAGGCAAATTATCTGCTGCTATCGTCATATGAGCAA
 
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rJMFF024C08-          GCGCCTCATCCACGGTTCGCGCCTCAATGATTGAATCATCGCGGTTGGTATTGGTGACAA
rJMSF007H22-          GCGCCTCATCCACGGTTCGCGCCTCAATGATTGAATCATCGCGGTTGGTATTGGTGACAA
                      ____________________________________________________________
consensus             GCGCCTCATCCACGGTTCGCGCCTCAATGATTGAATCATCGCGGTTGGTATTGGTGACAA
 
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rJMFF024C08-          GAACCACCCTTTCGTACTCCTCCTCCTCCGCAATACGGCTCTGCCTCCTCTTTTCCTCCT
rJMSF007H22-          GAACCACCCTTTCGTACTCCTCCTCCTCCGCAATACGGCTCTGCCTCCTCTTTTCCTCCT
JMFF024C08+                                                                  CTCCT
                      ____________________________________________________________
consensus             GAACCACCCTTTCGTACTCCTCCTCCTCCGCAATACGGCTCTGCCTCCTCTTTTCCTCCT
 
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rJMFF024C08-          CGGCCCTCTTCTGCATCGCTGCTTGCTCCTCTTCTCTACGTCTTCGGAGTTCCGCCTCCG
rJMSF007H22-          CGGCCCTCTTCTGCATCGCTGCTTGCTCCTCTTCTCTACGTCTTCGGAGTTCCGCCTCCG
JMFF024C08+           CGGCCCTCTTCTGCATCGCTGCTTGCTCCTCTTCTCTACGTCTTCGGAGTTCCGCCTCCG
                      ____________________________________________________________
consensus             CGGCCCTCTTCTGCATCGCTGCTTGCTCCTCTTCTCTACGTCTTCGGAGTTCCGCCTCCG
 
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rJMFF024C08-          TCATCTT                                                     
rJMSF007H22-          TCATCTTGGGCACCGGAACAGAGACTCGATTAGCTTTCTTGTCAGGCTTCT         
JMFF024C08+           TCATCTTGGGCACCGGAACAGAGACTCGATTAGCTTTCTTGTCAGGCTTCTTCAAGGATT
                      ____________________________________________________________
consensus             TCATCTTGGGCACCGGAACAGAGACTCGATTAGCTTTCTTGTCAGGCTTCTTCAAGGATT
 
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JMSF007H22+                                                                GCAGCAG
JMFF024C08+           TCTCGAGCTCCTTCTCCTCCTGTTCGGCAAGTCTACGGGCCTCGGCTTTCTTAGCAGCAG
                      ____________________________________________________________
consensus             TCTCGAGCTCCTTCTCCTCCTGTTCGGCAAGTCTACGGGCCTCGGCTTTCTTAGCAGCAG
 
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JMSF007H22+           CTTCGGCTCGCTTCTCCGCNTCTTCCTCACGTTTTTTGGTAGCGCGAGACTTTGCCCCCT
JMFF024C08+           CTTCGGCTCGCTTCTCCGCCTCTTCCTCACGTTTTTTGATAGCGCGAGACTTTGCCCCCT
                      ____________________________________________________________
consensus             CTTCGGCTCGCTTCTCCGCCTCTTCCTCACGTTTTTTGGTAGCGCGAGACTTTGCCCCCT
 
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JMSF007H22+           CGGCTTCGCGCCAGTACTGATCCTCCTTCTCTCTTGTTTCGCGCTCCTTTCGATCAGAAT
JMFF024C08+           CGGCTTCGCGCCAGTACTGATCCTCCTTCTCTCTTGTTTCGCGCTCCTTTCGATCAGAAT
                      ____________________________________________________________
consensus             CGGCTTCGCGCCAGTACTGATCCTCCTTCTCTCTTGTTTCGCGCTCCTTTCGATCAGAAT
 
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JMSF007H22+           CAGCAGCGCTCTTTCGAGCCCTAGCCGCCTCGGATTTACTGTTGACTCCCATCTTCTTTG
JMFF024C08+           CAGCAGCGCTCTTTCGAGCCCTAGCCGCCTCGGATTTACTGTTGACTCCCATCTTCTTTG
                      ____________________________________________________________
consensus             CAGCAGCGCTCTTTCGAGCCCTAGCCGCCTCGGATTTACTGTTGACTCCCATCTTCTTTG
 
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JMSF007H22+           GCATCTTTACCGATTTTTCCCTGCACGCTCCGATCAATCTCCGTCCACTCTCGAGTTTGG
JMFF024C08+           GCATCTTTACCGATTTTTCCCTGCACGCTCCGATCAATCTCCGTCCACTCTCGAGTTTGG
                      ____________________________________________________________
consensus             GCATCTTTACCGATTTTTCCCTGCACGCTCCGATCAATCTCCGTCCACTCTCGAGTTTGG
 
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JMSF007H22+           CAATCGGCGATGAAACATGT                                        
JMFF024C08+           CAATCGGCGATGAAACATGTGGCACTGTAGCAGTACCAAGTGTGAAGTTGAAATGGAAAC
                      ____________________________________________________________
consensus             CAATCGGCGATGAAACATGTGGCACTGTAGCAGTACCAAGTGTGAAGTTGAAATGGAAAC