| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF020K23 | Sequence | 539 | 010219 (7) | ref|XP_009791461.1| | 2e-45 | PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana sylvestris] ref|XP | 739 | 010219 (7) | ref|XP_009595455.1| | 3e-41 | PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana tomentosiformis] r |
| JMFF036M05 | Sequence | 541 | 010219 (7) | ref|XP_009791461.1| | 8e-82 | PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana sylvestris] ref|XP | 680 | 010219 (7) | ref|XP_009595455.1| | 4e-36 | PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana tomentosiformis] r |
| JMFN011A13 | Sequence | 624 | 010219 (7) | ref|XP_009791461.1| | 2e-98 | PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana sylvestris] ref|XP | |||||
| JMSF028H18 | Sequence | 659 | 010219 (7) | ref|XP_009791461.1| | 1e-108 | PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana sylvestris] ref|XP | 729 | 010219 (7) | ref|XP_009595455.1| | 8e-47 | PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Nicotiana tomentosiformis] r |
This contig is upended
. : . : . : . : . : . :
rJMFF036M05- ATTGA
____________________________________________________________
consensus ATTGA
. : . : . : . : . : . :
rJMFF036M05- TGTGAATAGTTTTCACCAATGACTCAATACCAAATGGATATAGTTAGGTGGTGCATTGGA
rJMSF028H18- AAATGGATATAGTTAGGTGGTGCATTGGA
rJMFF020K23- TCAATACCAAATGGATATAGTTAGGTGGTGCATTGGA
____________________________________________________________
consensus TGTGAATAGTTTTCACCAATGACTCAATACCAAATGGATATAGTTAGGTGGTGCATTGGA
. : . : . : . : . : . :
rJMFF036M05- ATCACACTTAATATTACAGAAAACTTTGAACTGAAGGATTAGAATTGTAATTCAATTCAA
rJMSF028H18- ATCACACTTAATATTACAGAAAACTTTGAACTGAAGGATTAGAATTGTAATTCAATTCAA
rJMFF020K23- ATCACACTTAATATTACAGAAAACTTTGAACTGAAGGATTAGAATTGTAATTCAATTCAA
____________________________________________________________
consensus ATCACACTTAATATTACAGAAAACTTTGAACTGAAGGATTAGAATTGTAATTCAATTCAA
. : . : . : . : . : . :
rJMFF036M05- TTCCTGCAAAAGGAAAAAGGAGGTTGGGCCGGGATTAAAATGAACATACTGTTACACATT
rJMSF028H18- TTCCTGCAAAAGGAAAAAGGAGGTTGGGCCGGGATTAAAATGAACATACTGTTACACATT
rJMFF020K23- TTCCTGCAAAAGGAAAAAGGAGGTTGGGCCGGGATTAAAATGAACATACTGTTACACATT
____________________________________________________________
consensus TTCCTGCAAAAGGAAAAAGGAGGTTGGGCCGGGATTAAAATGAACATACTGTTACACATT
. : . : . : . : . : . :
rJMFF036M05- ATGAAATATCTGTCAAATGTCAACTGAAATGTTTCAGAAATCTTCAACCTATCTGTTAAA
rJMSF028H18- ATGAAATATCTGTCAAATGTCAACTGAAATGTTTCAGAAATCTTCAACCTATCTGTTAAA
rJMFF020K23- ATGAAATATCTGTCAAATGTCAACTGAAATGTTTCAGAAATCTTCAACCTATTTGTTAAA
____________________________________________________________
consensus ATGAAATATCTGTCAAATGTCAACTGAAATGTTTCAGAAATCTTCAACCTATCTGTTAAA
. : . : . : . : . : . :
rJMFF036M05- AGATGAGAGGGACTTCAAAGAAACCCTAGCCACTTCAACCGAACTGAAAGCCGGAGGCTG
rJMSF028H18- AGATGAGAGGGACTTCAAAGAAACCCTAGCCACTTCAACCGAACTGAAAGCCGGAGGCTG
rJMFF020K23- AGATGAGAGGGACTTCAAAGAAACCCTAGCCACTTCAACCGAACTGAAAGCCGGAGGCTG
____________________________________________________________
consensus AGATGAGAGGGACTTCAAAGAAACCCTAGCCACTTCAACCGAACTGAAAGCCGGAGGCTG
. : . : . : . : . : . :
rJMFF036M05- CTGCTGCTGCTGCTGCTGCTGCTCGTTTCTGGTCTCATCCAGGCATAACATCCAGCAGTA
rJMSF028H18- CTGCTGCTGCTGCTGCTGCTGCTCGTTTCTGGTCTCATCCAGGCATAACATCCAGCAGTA
rJMFF020K23- CTGCTGCTGCTGCTGCTGCTGCTCGTTTCTGGTCTCATCCAGGCATAACATCCAGCAGTA
____________________________________________________________
consensus CTGCTGCTGCTGCTGCTGCTGCTCGTTTCTGGTCTCATCCAGGCATAACATCCAGCAGTA
. : . : . : . : . : . :
rJMFF036M05- GCATAATCTTGACGAGAACTAGGCCAACACTCACAACTCACTTTTCTGCAGAGAACAATG
rJMSF028H18- GCATAATCTTGACGAGAACTAGGCCAACACTCACAACTCACTTTTCTGCAGAGAACAATG
rJMFF020K23- GCATAATCTTGACGAGAACTAGGCCAACACTCACAACTCACTTTTCTGCAGAGAACAATG
____________________________________________________________
consensus GCATAATCTTGACGAGAACTAGGCCAACACTCACAACTCACTTTTCTGCAGAGAACAATG
. : . : . : . : . : . :
rJMFF036M05- AACCATTCTCCATTTTACTTTCCAGATCCCAGCCTCTCTCTTTAGCTTCCTCCTTCAGCC
rJMSF028H18- AACCATTCTCCATTTTACTTTCCAGATCCCAGCCTCTCTCTTTAGCTTCCTCCTTCAGCC
rJMFF020K23- AACCATTCTCCATTTTACTTTCCAGATCCCAGCCTCTCTCTTTAGCTTCCTCCTTCAGCC
____________________________________________________________
consensus AACCATTCTCCATTTTACTTTCCAGATCCCAGCCTCTCTCTTTAGCTTCCTCCTTCAGCC
. : . : . : . : . : . :
rJMFF036M05- TTTCAATCTGATTTTCAATCTGATAACATGCAGCTTGGATTTCTGTATTTTTCAAACATA
rJMSF028H18- TTTCAATCTGATTTTCAATCTGATAACATGCAGCTTGGATTTCTGTATTTTTCAAACATA
rJMFF020K23- TTTCAATCTGATTTTCAATCTGATAACATGCAGCTTGGATTTCTGTATTTTTCAAACATA
JMSF028H18+ TTTCAAACATA
____________________________________________________________
consensus TTTCAATCTGATTTTCAATCTGATAACATGCAGCTTGGATTTCTGTATTTTTCAAACATA
. : . : . : . : . : . :
rJMFF036M05- GCTCACTCCATTGTGTGGACAAAGCATTCAGCTCGTATGCAGTGTTTTGCTGGTGATATT
rJMSF028H18- GCTCACTCCATTGTGTGGACAAAGCATTCAGCTCGTATGCAGTGTTTTGCTGGTGATATT
rJMFF020K23- GCTCACTCCATTGTGTGGACAAAGCATTCAGCTCGTATGCAGTGTTTTGCTGGTGATATT
JMSF028H18+ GCTCACTCCATTGTGTGGACAAAGCATTCAGCTCGTATGCAGTGTTTTGCTGGTGATATT
JMFN011A13+ CGTATGCAGTGTTNTGCTGGTGATATT
____________________________________________________________
consensus GCTCACTCCATTGTGTGGACAAAGCATTCAGCTCGTATGCAGTGTTTTGCTGGTGATATT
. : . : . : . : . : . :
rJMFF036M05- TCCTTTCTCGATTTACGCTTTCAATCTCTTCATTTAACTTAACAGCCTGTGACTGCATTC
rJMSF028H18- TCCTTTCTCGATTTACGCTTTCAATCTCTTCATTTAACTTAACAGCCTGTGACTGCATTC
rJMFF020K23- TCCTTTCTCGATTTACGCTTTCAAT-TCTTCATTTAACTTAACAGCCTGTGACTGCATTC
JMSF028H18+ TCCTTTCTCGATTTACGCTTTCAATCTCTTCATTTAACTTAACAGCCTGTGACTGCATTC
JMFF036M05+ ACTGCATTC
JMFN011A13+ TCCTTTCTCGATTTACGCTTTCAATCTCTTCATTTAACTTAACAGCCTGTGACTGCATTC
____________________________________________________________
consensus TCCTTTCTCGATTTACGCTTTCAATCTCTTCATTTAACTTAACAGCCTGTGACTGCATTC
. : . : . : . : . : . :
rJMFF036M05- TGGCTAAAAAAGCCT
rJMSF028H18- TGGCTAAAAAAGCCTCCAGACTTTGGTTGTATAGCTTCCAAGCATCGGGACCATGA-TTA
rJMFF020K23- TGGCTAAAAAAGCCTCCAGACTTTGGTTGTATAGCTTCCAAGCATCGGGACCATGATTTA
JMSF028H18+ TGGCTAAAAAAGCCTCCAGACTTTGGTTGTATAGCTTCCAAGCATCGGGACCATGATTTA
JMFF036M05+ TGGCTAAAAAAGCCTCCAGACTTTGGTTGTATAGCTTCCAAGCATCGGGACCATGATTTA
JMFN011A13+ TGGCTAAAAAAGCCTCCAGACTTTGGTTGTATAGCTTCCAAGCATCGGGACCATGATTTA
JMFF020K23+ TGGCTAAAAAAGCCTCCAGACTTTGGTTGTATAGCTTCCAAGCATCGGGACCATGATTTA
____________________________________________________________
consensus TGGCTAAAAAAGCCTCCAGACTTTGGTTGTATAGCTTCCAAGCATCGGGACCATGATTTA
. : . : . : . : . : . :
rJMSF028H18- ACATTACGTCTAGATTTTCAGGCCTAATTACTTGATGCTGC
rJMFF020K23- ACATTACGTCTAGATTTTCNAGCCTAATTACTTGATGCTGCAA
JMSF028H18+ ACATTACGTCTAGATTTTCAAGCCTAATTACTTGATGCTGCAATAAGCGCTGAGCTTTCT
JMFF036M05+ ACATTACGTCTAGATTTTCAAGCCTAATTACTTGATGCTGCAATAAGCGCTGAGCTTTCT
JMFN011A13+ ACATTACGTCTAGATTTTCAAGCCTAATTACTTGATGCTGCAATAAGCGCTGAGCTTTCT
JMFF020K23+ ACATTACGTCTAGATTTTCAAGCCTAATTACTTGATGCTGCAATAAGCGCTGAGCTTTCT
____________________________________________________________
consensus ACATTACGTCTAGATTTTCAAGCCTAATTACTTGATGCTGCAATAAGCGCTGAGCTTTCT
. : . : . : . : . : . :
JMSF028H18+ GAAGAGCTTGTTTCCATGCGGATTCATCATTCCGTTTATGCGGCGTTTCAATACCATATC
JMFF036M05+ GAAGAGCTTGTTTCCATGCGGATTCATCATTCCGTTTATGCGGCGTTTCAATACCATATC
JMFN011A13+ GAAGAGCTTGTTTCCATGCGGATTCATCATTCCGTTTATGCGGCGTTTCAATACCATATC
JMFF020K23+ GAAGAGCTTGTTTCCATGCGGATTCATCATTCCGTTTATGCGGCGTTTCAATACCATATC
____________________________________________________________
consensus GAAGAGCTTGTTTCCATGCGGATTCATCATTCCGTTTATGCGGCGTTTCAATACCATATC
. : . : . : . : . : . :
JMSF028H18+ TTGACGTGTCAATTTGCACCGGAGGCTTCCCAGCTCTCACCCGTTCATACTCCCTTGCAA
JMFF036M05+ TTGACGTGTCAATTTGCACCGGAGGCTTCCCAGCTCTCACCCGTTCATACTCCCTTGCAA
JMFN011A13+ TTGACGTGTCAATTTGCACCGGAGGCTTCCCAGCTCTCACCCGTTCATACTCCCTTGCAA
JMFF020K23+ TTGACGTGTCAATTTGCACCGGAGGCTTCCCAGCTCTCACCCGTTCATACTCCCTTGCAA
____________________________________________________________
consensus TTGACGTGTCAATTTGCACCGGAGGCTTCCCAGCTCTCACCCGTTCATACTCCCTTGCAA
. : . : . : . : . : . :
JMSF028H18+ GCATTGGATGATTCTCAAAATTGTTCTTGGGGAGAGGAGGAAGGTCCTTGAGAAAGTCGG
JMFF036M05+ GCATCGGATGATTCTCAAAATTGTTCTTGGGGAGAGGAGGAAGGTCCTTGAGAAAGTCGG
JMFN011A13+ GCATTGGATGATTCTCAAAATTGTTCTTGGGGAGAGGAGGAAGGTCCTTGAGAAAGTCGG
JMFF020K23+ GAATTGGATGATTCTCAAAATTGTTCTTGGGGAGAGGAGGAAGGTCCTTGAGAAAGTCGG
____________________________________________________________
consensus GCATTGGATGATTCTCAAAATTGTTCTTGGGGAGAGGAGGAAGGTCCTTGAGAAAGTCGG
. : . : . : . : . : . :
JMSF028H18+ AGGGCTTTTTTATGCTGCGGCGCATCTCTTCCTCGACTAAACGGTCCACCTCTGCTTTCA
JMFF036M05+ AGGGCTTTTTTATGCTGCGGCGCATCTCTTCCTCGACTAAACGGTCCACCTCTGCTTTCA
JMFN011A13+ AGGGCTTTTTTATGCTGCGGCGCATCTCTTCCTCGACTAAACGGTCCACCTCTGCTTTCA
JMFF020K23+ AGGGCTTTTTTATGCTGCGGCGCATCTC-TCCTCGACTAAACGGTCCACCTCTGCTTTCA
____________________________________________________________
consensus AGGGCTTTTTTATGCTGCGGCGCATCTCTTCCTCGACTAAACGGTCCACCTCTGCTTTCA
. : . : . : . : . : . :
JMSF028H18+ CTTTCGGGTCACCATAGTCGTCGTCTATGTACGGCAAAGCATCTATTAGCTCCGAGCCAC
JMFF036M05+ CTTTCGGGTCACCATAGTCGTCGTCTATGTACGGCAAAGCATCTATTAGCTCCGAGCCAC
JMFN011A13+ CTTTCGGGTCACCATAGTCGTCGTCTATGTACGGCAAAGCATCTATTAGCTCCGAGCCAC
JMFF020K23+ CTTTCGGGTCACCATAGTCGTCGTCTATGTACGGCAAAGCATCTATTAGCTCCGAGCCAC
____________________________________________________________
consensus CTTTCGGGTCACCATAGTCGTCGTCTATGTACGGCAAAGCATCTATTAGCTCCGAGCCAC
. : . : . : . : . : . :
JMSF028H18+ TGGACCATGCCGGCTGAGCCTCCGGCGGCGCCTCAAGCATTAGAACGTCTCCATTGTTTG
JMFF036M05+ TGGACCATGCCGGCTGAGCCTCCGGCGGCGCCTCAAGCATTAGAACGTCTCCATTGTCTG
JMFN011A13+ TGGACCATGCCGGCTGAGCCTCCGGCGGCGCCTCAAGCATTAGAACGTCTCCATTGTTTG
JMFF020K23+ TGGACCATGCCGGCTGAGCCTCCGGCGGCGCCTCAAGCATTAGAACGTCTCCATTGTTTG
____________________________________________________________
consensus TGGACCATGCCGGCTGAGCCTCCGGCGGCGCCTCAAGCATTAGAACGTCTCCATTGTTTG
. : . : . : . : . : . :
JMSF028H18+ TAGACGCCATCGCTCCACAAAGCAGTCGGGCAGGGCGCAGTGATGGT
JMFF036M05+ TAGACGCCATCGCTCCACAAAGCAGTCGGGCAGGGCGCAGTGATGGT
JMFN011A13+ TAGACGCCATCGCTCCACAAAGCAGTCGGGCAGGGCGCAGTGATGGTGATTC
JMFF020K23+ TAGACGCCATCGCTCCACAAAGCAGTCGGGCAGGGCGCAGTGATGGTGATTCGAAATTCC
____________________________________________________________
consensus TAGACGCCATCGCTCCACAAAGCAGTCGGGCAGGGCGCAGTGATGGTGATTCGAAATTCC