Contig 010217:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019O18Sequence540010217 (3)ref|XP_010257816.1|4e-57PREDICTED: expansin-A1 [Nelumbo nucifera]685006930 (5)gb|AAZ08311.1|4e-41putative alpha-expansin [Eucalyptus globulus]
JMFF042B09Sequence619010217 (3)gb|KDP41217.1|5e-67hypothetical protein JCGZ_15624 [Jatropha curcas]657006930 (5)gb|AAZ08311.1|1e-28putative alpha-expansin [Eucalyptus globulus]
JMSF002E12Sequence392010217 (3)gb|AJR32958.1|2e-23expansin [Nelumbo nucifera]568006930 (5)gb|AAZ08311.1|5e-15putative alpha-expansin [Eucalyptus globulus]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042B09+                                                  CGCCGGCGCCGCCCACATTGG
                      ____________________________________________________________
consensus                                                    CGCCGGCGCCGCCCACATTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042B09+           TGACCAGTACCAGGTGAAGAAAGCGTGGCCGTTGATTGTGAACCTTATTCCTCCCCTTCT
JMFF019O18+                                                                      T
                      ____________________________________________________________
consensus             TGACCAGTACCAGGTGAAGAAAGCGTGGCCGTTGATTGTGAACCTTATTCCTCCCCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042B09+           CTTGCAGGGCACCCTTTTGTAAGCGACGGGGACGATGCCGGCTCTGTACTGGGCAATGTG
JMFF019O18+           CTTGCAGGGCACCCTTTTGTAAGCGACGGGGACGATGCCGGCTCTGTACTGGGCAATGTG
                      ____________________________________________________________
consensus             CTTGCAGGGCACCCTTTTGTAAGCGACGGGGACGATGCCGGCTCTGTACTGGGCAATGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042B09+           TTGGAAGACGGGCTGAGAGAGGTCAAAGTGGTGGAGGGGAGGGTTGCACCACCCGCCGGC
JMFF019O18+           TTGGAAGACGGGCTGAGAGAGGTCAAAGTGGTGGAGGGGAGGGTTGCACCACCCGCCGGC
                      ____________________________________________________________
consensus             TTGGAAGACGGGCTGAGAGAGGTCAAAGTGGTGGAGGGGAGGGTTGCACCACCCGCCGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042B09+           GTTGTTGGGGAGGCCGTTGTTCGGCGGGCAGAAGTTAGTGGCGGTGACCTGAATAGTT-C
JMSF002E12+                                       CAGAAGTTAGTGGCGGTGACCTGAATAGTTCC
JMFF019O18+           GTTGTTGGGGAGGCCGTTGTTCGGCGGGCAGAAGTTAGTGGCGGTGACCTGAATAGTT-C
                      ____________________________________________________________
consensus             GTTGTTGGGGAGGCCGTTGTTCGGCGGGCAGAAGTTAGTGGCGGTGACCTGAATAGTT-C
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042B09+           CCGGCAGGCAAGATTTGTCACCCACACACCTAATTGCATAGCAAGACCCACAGCTCAACC
JMSF002E12+           CCGGCAGGCAAGATTTGTCACCCACACACCTAATTGCATAGCAAGACCCACAGCTCAACC
JMFF019O18+           CCGGCAGGCAAGATTTGTCACCCACACACCTAATTGCATAGCAAGACCCACAGCTCAACC
                      ____________________________________________________________
consensus             CCGGCAGGCAAGATTTGTCACCCACACACCTAATTGCATAGCAAGACCCACAGCTCAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042B09+           CATTGTTGAACAGCGCTGTACTCAGCGCTGCAGTGTTTGTACCATACCCTTGACTATACA
JMSF002E12+           CATTGTTGAACAGCGCTGTACTCAGCGCTGCAGTGTTTGTACCATACCCTTGACTATACA
JMFF019O18+           CATTGTTGAACAGCGCTGTACTCAGCGCTGCAGTGTTTGTACCATACCCTTGACTATACA
                      ____________________________________________________________
consensus             CATTGTTGAACAGCGCTGTACTCAGCGCTGCAGTGTTTGTACCATACCCTTGACTATACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042B09+           AATTCCCATAACCACAAGCCCCACCCATCGTGCCGGAGGCGTCACCGCCGCCGTAGAAGG
JMSF002E12+           AATTCCCATAACCACAAGCCCCACCCATCGTGCCGGAGGCGTCACCGCCGCCGTAGAAGG
JMFF019O18+           AATTCCCATAACCACAAGCCCCACCCATCGTGCCGGAGGCGTCACCGCCGCCGTAGAAGG
                      ____________________________________________________________
consensus             AATTCCCATAACCACAAGCCCCACCCATCGTGCCGGAGGCGTCACCGCCGCCGTAGAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042B09+           TGGCGTGGGCGTTGGTCCACCCTCCTCCGGTGCCGTAGCCATTGACATTAGAGGCCATTG
JMSF002E12+           TGGCGTGGGCGTTGGTCCACCCTCCTCCGGTGCCGTAGCCATTGACATTAGAGGCCATTG
JMFF019O18+           TGGCGTGGGCGTTGGTCCACCCTCCTCCGGTGCCGTAGCCATTGACATTAGAGGCCATTG
                      ____________________________________________________________
consensus             TGGCGTGGGCGTTGGTCCACCCTCCTCCGGTGCCGTAGCCATTGACATTAGAGGCCATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042B09+           CGAGAAGGACAGCGAGGGAAACCGCAATGAGAGCCATGAGGGAGAAGAGGGTAATTTTAC
JMSF002E12+           CGAGAAGGACAGCGAGGGAAACCGCAATGAGAGCCATGAGGGAGAAGAGGGTAATTTTAC
JMFF019O18+           CGAGAAGGACAGCGAGGGAAACCGCAATGAGAGCCATGAGGGAGAAGAGGGTAATTTTAC
                      ____________________________________________________________
consensus             CGAGAAGGACAGCGAGGGAAACCGCAATGAGAGCCATGAGGGAGAAGAGGGTAATTTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF042B09+           TCTTTGGGAGTGGGATTTTCAAAAGGGGATATGGCTATGGGGAGGAGAGAAGTTTTT   
JMSF002E12+           TCTTTGGGAGTGGGATTTTCAAAAGGGGATATGGCTATGGGGAGGAGAGAAGTTTTT   
JMFF019O18+           TCTTTGGGAGTGGGATTTTCAAAAGGGGATATGGCTATGGGGAGGAGAGAAGTTTTTTGT
                      ____________________________________________________________
consensus             TCTTTGGGAGTGGGATTTTCAAAAGGGGATATGGCTATGGGGAGGAGAGAAGTTTTTTGT