Contig 010216:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C18-                  ACCCTGGAGAGTTTTTTTTTTTTTTTTAGAAAATCAATGATTTTTCTTAAAA
                      ____________________________________________________________
consensus                     ACCCTGGAGAGTTTTTTTTTTTTTTTTAGAAAATCAATGATTTTTCTTAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C18-          TATATTCATATAAACATGTTTTGTTTCATGTATACACAATTTATTCCTTCAAGTTACAAA
rJMFF019M10-                          TGTTTTGTTTCATGTATACACAATTTATTCCTTCAAGTTACAAA
                      ____________________________________________________________
consensus             TATATTCATATAAACATGTTTTGTTTCATGTATACACAATTTATTCCTTCAAGTTACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C18-          CAAAGAAAAACAACATCAAGTTATTATCACCAAAAGGCCAAATCAAGAATCCGAAAAAGA
rJMFF019M10-          CAAAGAAAAACAACATCAAGTTATTATCACCAAAAGGCCAAATCAAGAATCCGAAAAAGA
                      ____________________________________________________________
consensus             CAAAGAAAAACAACATCAAGTTATTATCACCAAAAGGCCAAATCAAGAATCCGAAAAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C18-          ATAATAATACAATGAAGTTAATTAATTCTTAAAATTCATCATGGGAAGATGGGGATGATG
rJMFF019M10-          ATAATAATACAATGAAGTTAATTAATTCTTAAAATTCATCATGGGAAGATGGGGATGATG
                      ____________________________________________________________
consensus             ATAATAATACAATGAAGTTAATTAATTCTTAAAATTCATCATGGGAAGATGGGGATGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C18-          AGAAAGGTGGAAATTCAATCTTGGAACCACATCTTCCTCCACGTGGCAGAATTGGGCAGT
rJMFF019M10-          AGAAAGGTGGAAATTCAATCTTGGAACCACATCTTCCTCCACGTGGCAGAATTGGGCAGT
                      ____________________________________________________________
consensus             AGAAAGGTGGAAATTCAATCTTGGAACCACATCTTCCTCCACGTGGCAGAATTGGGCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C18-          CAATGAAATTTTCTGCAGAAGAGTCCACACAAAGGTAAACCTGGTACACCTGGCGGTTCC
rJMFF019M10-          CAATGAAATTTTCTGCAGAAGAGTCCACACAAAGGTAAACCTGGTACACCTGGCGGTTCC
                      ____________________________________________________________
consensus             CAATGAAATTTTCTGCAGAAGAGTCCACACAAAGGTAAACCTGGTACACCTGGCGGTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C18-          CCATTGGATCAACATTGCACTCTATGAATGGACTGAACCCAACTCCTTCCTCAATCGCAC
rJMFF019M10-          CCATTGGATCAACATTGCACTCTATGAATGGACTGAACCCAACTCCTTCCTCAATCGCAC
JMFF046C18+                                                CCCACCTCCTTCNTCAATCGCAC
JMFF019M10+                                                               AATCGCAC
                      ____________________________________________________________
consensus             CCATTGGATCAACATTGCACTCTATGAATGGACTGAACCCAACTCCTTCCTCAATCGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C18-          TTTTTATTTCCTCTATTGTGTAATGTTCTCCCTCCCGAGGTTCAATTCCTGCATTCTTAA
rJMFF019M10-          TTTTTATTTCCTCTATTGTGTAATGTTCTCCCTCCCGAGGTTCAATTCCTGCATTCTTAA
JMFF046C18+           TTTTTATTCCCTCTATNGTGTAATGTTCTCCCTCCCGAGGTTCAATTCCTGCATTCTTAA
JMFF019M10+           TTTTTATTTCCTCTATTGTGTAATGTTCTCCCTCCCGAGGTTCAATTCCTGCATTCTTAA
                      ____________________________________________________________
consensus             TTTTTATTTCCTCTATTGTGTAATGTTCTCCCTCCCGAGGTTCAATTCCTGCATTCTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C18-          GGTTTTGGAGAAGATTTGCTTTAGTTTTGAATTGGAGAGCTTTTTGGAAATAGTCATGTT
rJMFF019M10-          GGTTTTGGAGAAGATTTGCTTTAGTTTTGAATTGGAGAGCTTTTTGGAAATAGTCATGTT
JMFF046C18+           GGTTTGGAGANAGATTTGCTTTAGTTTTGAATTGGAGAGCTTTTTGGAAATAGTCATGTT
JMFF019M10+           GGTTTTGGAGAAGATTTGCTTTAGTTTTGAATTGGAGAGCTTTTTGGAAATAGTCATGTT
                      ____________________________________________________________
consensus             GGTTTTGGAGAAGATTTGCTTTAGTTTTGAATTGGAGAGCTTTTTGGAAATAGTCATGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF046C18-          GGTTAAGGCCAGAACATGTTCCATGTTTCTCCCATTCAT                     
rJMFF019M10-          GGTTAAGGCCAGAACATGTTCCATGTTTCTCCCATTCATGGCTCCAAAACCTTACGCCGT
JMFF046C18+           GGTTAAGGCCAGAACATGTTCCATGTTTCTCCCATTCATGGCTCCAAAACCTTACGCCGT
JMFF019M10+           GGTTAAGGCCAGAACATGTTCCATGTTTCTCCCATTCATGGCTCCAAAACCTTACGCCGT
                      ____________________________________________________________
consensus             GGTTAAGGCCAGAACATGTTCCATGTTTCTCCCATTCATGGCTCCAAAACCTTACGCCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF019M10-          CGCTGCTTGGGCAGGCAAGTGACGGCCAATCTCTCTCCATTCTGCTTATCAGATCTGAGA
JMFF046C18+           CGCTGCTTGGGCAGGCAAGTGACGGCCAATCTCTCTCCATTCTGCTTATCAGATCTGAGA
JMFF019M10+           CGCTGCTTGGGCAGGCAAGTGACGGCCAATCTCTCTCCATTCTGCTTATCAGATCTGAGA
                      ____________________________________________________________
consensus             CGCTGCTTGGGCAGGCAAGTGACGGCCAATCTCTCTCCATTCTGCTTATCAGATCTGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF019M10-          CCAGTGATTCGTCCAAAGAGCTTCGACGATCACAGTTTTGAGGCCATTTGCCACTAAGGT
JMFF046C18+           CCAGTGATTCGTCCAAAGAGCTTTGACGATCACAGTTTTGAGGCCATTTGCCACTAAGGT
JMFF019M10+           CCAGTGATTCGTCCAAAGAGCTTCGACGATCACAGTTTTGAGGCCATTTGCCACTAAGGT
                      ____________________________________________________________
consensus             CCAGTGATTCGTCCAAAGAGCTTCGACGATCACAGTTTTGAGGCCATTTGCCACTAAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF019M10-          AGTTANGCCAGAGGCCGTGGATGCTGAAATCCTCCGCAGGTTTTCCGGTGG         
JMFF046C18+           AGTTAGGCCAGAGGCCGTGGATGCTGAAATCCTCCGCAGGTTTTCCGGTGGTCGGATAAC
JMFF019M10+           AGTTAGGCCAGAGGCCGTGGATGCTGAAATCCTCCGCAGGTTTTCCGGTGGTCGGATAAC
                      ____________________________________________________________
consensus             AGTTAGGCCAGAGGCCGTGGATGCTGAAATCCTCCGCAGGTTTTCCGGTGGTCGGATAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046C18+           AACAACTCCGTCTCGTATCGCAGTATGATGCCGGCCACTGTTGAACAAAGTAGAAGAAAT
JMFF019M10+           AACAACTCCGTCTCGTATCGCAGTATGATGCCGGCCACTGTTGAACAAAGTAGAAGAAAT
                      ____________________________________________________________
consensus             AACAACTCCGTCTCGTATCGCAGTATGATGCCGGCCACTGTTGAACAAAGTAGAAGAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046C18+           CAAAGTGTTGTGAAGCAGACAAGACCACCAGACATTGTAGAACCAAAAGCTTGATCAACG
JMFF019M10+           CAAAGTGTTGTGAAGCAGACAAGACCACCAGACATTGTAGAACCAAAAGCTTGATCAACG
                      ____________________________________________________________
consensus             CAAAGTGTTGTGAAGCAGACAAGACCACCAGACATTGTAGAACCAAAAGCTTGATCAACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046C18+           TTGTTGATTTCTTCATGTTTCTTTTCCAACTTTCTTTAAGGTGTG               
JMFF019M10+           TTGTTGATTTCTTCATGTTTCTTTTCCAACTTTCTTTAAGGTGTGTGGGGATTGCTAATT
                      ____________________________________________________________
consensus             TTGTTGATTTCTTCATGTTTCTTTTCCAACTTTCTTTAAGGTGTGTGGGGATTGCTAATT