| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019L09 | Sequence | 572 | 010215 (5) | ref|XP_008381263.1| | 1e-92 | PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Malus | 661 | 010215 (5) | sp|P04715.1|RBS2_PETHY | 4e-96 | RecName: Full=Ribulose bisphosphate carboxylase small chain SSU11A, chloroplast |
| JMFF035I05 | Sequence | 456 | 010215 (5) | ref|XP_010032637.1| | 2e-52 | PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Eucaly | |||||
| JMFN012B20 | Sequence | 570 | 010215 (5) | sp|P04715.1|RBS2_PETHY | 4e-84 | RecName: Full=Ribulose bisphosphate carboxylase small chain SSU11A, chloroplast | |||||
| JMFN038G12 | Sequence | 628 | 010215 (5) | sp|P04715.1|RBS2_PETHY | 5e-94 | RecName: Full=Ribulose bisphosphate carboxylase small chain SSU11A, chloroplast | |||||
This contig is upended
. : . : . : . : . : . :
JMFN038G12+ GCATGCTGCTACACAGAGCATGGAGCACAATAAAATTTGGCAATGATGAA
____________________________________________________________
consensus GCATGCTGCTACACAGAGCATGGAGCACAATAAAATTTGGCAATGATGAA
. : . : . : . : . : . :
JMFN012B20+ GGGCTTGTATGCAATGAACATGATGCACTGGACT
rJMFF035I05- GGGCTTGTATGCAATGAACATGATGCACTGGACT
rJMFF019L09- GGGCTTGTATGCAATGAACATGATGCACTGGACT
JMFN038G12+ ACATTGAAATGGATATTCTAGTCGTGGGGCTTGTATGCAATGAACATGATGCACTGGACT
JMFF019L09+ GTATGCAATGAACATGATGCACTGGACT
____________________________________________________________
consensus ACATTGAAATGGATATTCTAGTCGTGGGGCTTGTATGCAATGAACATGATGCACTGGACT
. : . : . : . : . : . :
JMFN012B20+ TGGCGCCTGTTATCGAAGCCCAGAATTCTAACCCATGCACCCGGGTATGCCTTTTTGCAC
rJMFF035I05- TGGCGCCTGTTATCAAANCCCANAATTCTAACCCATGCACCCGGGTATGCCTTTTTGCAC
rJMFF019L09- TGGCGCCTGTTATCGAAGCCCAGAATTCTAACCCATGCACCCGGGTATGCCTTTTTGCAC
JMFN038G12+ TGGCGCCTGTTATCGAAGCCCAGAATTCTAACCCATGCACCCGGGTATGCCTTTTTGCAC
JMFF019L09+ TGGCGCCTGTTATCGAAGCCCAGAATTCTAACCCATGCACCCGGGTATGCCTTTTTGCAC
____________________________________________________________
consensus TGGCGCCTGTTATCGAAGCCCAGAATTCTAACCCATGCACCCGGGTATGCCTTTTTGCAC
. : . : . : . : . : . :
JMFN012B20+ TCCTCCAGCTCTGCTACCACCTGGGTCGCATCCGTGCACCCGAACATCGGCAGCTTCCAC
rJMFF035I05- TCCTCCAGCTCTGCTACCACCTGGGTCGCATCCGTGCACCCNAACATCGGCAGCTTCCAC
rJMFF019L09- TCCTCCAGCTCTGCTACCACCTGGGTCGCATCCGTGCACCCGAACATCGGCAGCTTCCAC
JMFN038G12+ TCCTCCAGCTCTGCTACCACCTGGGTCGCATCCGTGCACCCGAACATCGGCAGCTTCCAC
JMFF019L09+ TCCTCCAGCTCTGCTACCACCTGGGTCGCATCCGTGCACCCGAACATCGGCAGCTTCCAC
____________________________________________________________
consensus TCCTCCAGCTCTGCTACCACCTGGGTCGCATCCGTGCACCCGAACATCGGCAGCTTCCAC
. : . : . : . : . : . :
JMFN012B20+ ATTGTCCAGTATCTTCCGTCGTAGTATCCCGGTGAACTGTGCCATTCACGGTATACGAAT
rJMFF035I05- ATTGTCCAGTATCTTCCGNCGTAGNATCCCGGNGAACTGNGCCATTCACGGTATACNAAT
rJMFF019L09- ATTGTCCAGTATCTTCCGTCGTAGTATCCCGGTGAACTGTGCCATTCACGGTATACGAAT
JMFN038G12+ ATTGTCCAGTATCTTCCGTCGTAGTATCCCGGTGAACTGTGCCATTCACGGTATACGAAT
JMFF019L09+ ATTGTCCAGTATCTTCCGTCGTAGTATCCCGGTGAACTGTGCCATTCACGGTATACGAAT
____________________________________________________________
consensus ATTGTCCAGTATCTTCCGTCGTAGTATCCCGGTGAACTGTGCCATTCACGGTATACGAAT
. : . : . : . : . : . :
JMFN012B20+ CCTTTCTCAGTCTCGAATTCCAAGCAAGGAACCCATCCTTTGTTAAGCAGGTACTCCACT
rJMFF035I05- CCTTTCTCAGNCTCGAATTCCAANCAAGGAACCCATCCTTTGTTAANCAGGTACTCCACT
rJMFF019L09- CCTTTCTCAGTCTCGAATTCCAAGCAAGGAACCCATCCTTTGTTAAGCAGGTACTCCACT
JMFN038G12+ CCTTTCTCAGTCTCGAATTCCAAGCAAGGAACCCATCCTTTGTTAAGCAGGTACTCCACT
JMFF019L09+ CCTTTCTCAGTCTCGAATTCCAAGCAAGGAACCCATCCTTTGTTAAGCAGGTACTCCACT
____________________________________________________________
consensus CCTTTCTCAGTCTCGAATTCCAAGCAAGGAACCCATCCTTTGTTAAGCAGGTACTCCACT
. : . : . : . : . : . :
JMFN012B20+ TGTTTGAGCAATTGCTCAGTGCTCAATGGAGGCAGGTATGACAGTGTCTCGAACTTCTTC
rJMFF035I05- TGTTTGANCAATTGCTCAGNGCTCAATGGANGCAGGTATGACAGTGTCTCNAACTTCTTC
rJMFF019L09- TGTTTGAGCAATTGCTCAGTGCTCAATGGAGGCAGGTATGACAGTGTCTCGAACTTCTTC
JMFN038G12+ TGTTTGAGCAATTGCTCAGTGCTCAATGGAGGCAGGTATGACAGTGTCTCGAACTTCTTC
JMFF019L09+ TGTTTGAGCAATTGCTCAGTGCTCAATGGAGGCAGGTATGACAGTGTCTCGAACTTCTTC
____________________________________________________________
consensus TGTTTGAGCAATTGCTCAGTGCTCAATGGAGGCAGGTATGACAGTGTCTCGAACTTCTTC
. : . : . : . : . : . :
JMFN012B20+ AACCCGAATGGCGGCCAAACCTGCATGCATTGTACTCTAGTGCCGTTGGTTGCAATGGAA
rJMFF035I05- AACCC
rJMFF019L09- AACCCGAATGGCGGCCAAACCTGCATGCATTGTACTCTAGTGCCGTTGGTTGCAATGGAA
JMFN038G12+ AACCCGAATGGCGGCCAAACCTGCATGCATTGTACTCTAGTGCCGTTGGTTGCAATGGAA
JMFF019L09+ AACCCGAATGGCGGCCAAACCTGCATGCATTGTACTCTAGTGCCGTTGGTTGCAATGGAA
____________________________________________________________
consensus AACCCGAATGGCGGCCAAACCTGCATGCATTGTACTCTAGTGCCGTTGGTTGCAATGGAA
. : . : . : . : . : . :
JMFN012B20+ GTAAAGTCGGCGGATTTCCTAGTGACGGGGAAAGAGGCGGTGGA
rJMFF019L09- GTAAAGTCGGCGGATTTCCTAGTGACGGGGAAAGAGGCGGTGGACTTGAGACCGGTGAAA
JMFN038G12+ GTAAAGTCGGCGGATTTCCTAGTGACGGGGAAAGAGGCGGTGGACTTGAGACCGGTGAAA
JMFF019L09+ GTAAAGTCGGCGGATTTCCTAGTGACGGGGAAAGAGGCGGTGGACTTGAGACCGGTGAAA
____________________________________________________________
consensus GTAAAGTCGGCGGATTTCCTAGTGACGGGGAAAGAGGCGGTGGACTTGAGACCGGTGAAA
. : . : . : . : . : . :
rJMFF019L09- GGTGCGACCATGCTGGCCTTGGCAGCGGTGGCGCGG
JMFN038G12+ GGTGCGACCATGCTGGCCTTGGCAGCGGTGGCGCGGCCGGAAATGGCGGCGGAGGAGAGG
JMFF019L09+ GGTGCGACCATGCTGGCCTTGGCAGCGGTGGCGCGGCCGGAAATGGCGGCGGAGGAGAGG
____________________________________________________________
consensus GGTGCGACCATGCTGGCCTTGGCAGCGGTGGCGCGGCCGGAAATGGCGGCGGAGGAGAGG
. : . : . : . : . : . :
JMFN038G12+ ACTGAGGACGCCATT
JMFF019L09+ ACTGAGGACGCCATTACTGCCGATCGCTACTTTACTTTGATTTGTAGTATTGGTGGTGAT
____________________________________________________________
consensus ACTGAGGACGCCATTACTGCCGATCGCTACTTTACTTTGATTTGTAGTATTGGTGGTGAT