| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019I22 | Sequence | 543 | 010214 (4) | ref|XP_002312854.1| | 2e-85 | chaperonin family protein [Populus trichocarpa] gb|EEE86809.1| chaperonin family | 713 | 008211 (2) | ref|XP_007048315.1| | 2e-75 | TCP-1/cpn60 chaperonin family protein [Theobroma cacao] gb|EOX92472.1| TCP-1/cpn |
| JMFS142B05 | Sequence | 626 | 010214 (4) | gb|KJB46889.1| | 7e-109 | hypothetical protein B456_008G000400 [Gossypium raimondii] | |||||
| JMSF022L16 | Sequence | 546 | 010214 (4) | ref|XP_008366394.1| | 318 | PREDICTED: T-complex protein 1 subunit eta-like [Malus domestica] | |||||
| JMSF038C14 | Sequence | 667 | 010214 (4) | ref|XP_011006278.1| | 349 | PREDICTED: T-complex protein 1 subunit eta-like [Populus euphratica] | 804 | 008211 (2) | ref|XP_007048315.1| | 2e-100 | TCP-1/cpn60 chaperonin family protein [Theobroma cacao] gb|EOX92472.1| TCP-1/cpn |
This contig is upended
. : . : . : . : . : . :
JMSF038C14+ AAAGGACAGCATCAACAACCATGGATGCAAAAAAAA
____________________________________________________________
consensus AAAGGACAGCATCAACAACCATGGATGCAAAAAAAA
. : . : . : . : . : . :
JMSF022L16+ CAATGAGTTTTGATGATAATGTTGTCGCAGCACATTTAGCTAGCAGA
JMSF038C14+ TCCTTTTCCCCACCAATAAGTTTTGATGACAGTGTTGTAGCTGCACACTTAGCAAGCAGA
JMFS142B05+ CAATAAGTTTTGATGACAGTGTTGTAGCTGCACACTTAGCAAGCAGA
____________________________________________________________
consensus TCCTTTTCCCCACCAATAAGTTTTGATGACAGTGTTGTAGCTGCACACTTAGCAAGCAGA
. : . : . : . : . : . :
JMSF022L16+ TTTTTCTTTTCATCCATGCTCTTTCCCTCTATGCTAATAGCCAATTCTTTCACTTTCTCA
JMSF038C14+ CTTCTCTTTTCTTCCATGCTTTTACCCTCTATGCTAACAGCCAATTCTTTTACCTTCTCA
JMFS142B05+ CTTCTCTTTTCTTCCATGCTTTTACCCTCTATGCTAACAGCCAATTCTTTTACCTTCTCA
____________________________________________________________
consensus CTTCTCTTTTCTTCCATGCTTTTACCCTCTATGCTAACAGCCAATTCTTTTACCTTCTCA
. : . : . : . : . : . :
JMSF022L16+ GTAGCCAAATTGCAAGCAGTTCGGAAACTGCGAATCAGATTTTGAGGGTGCACTCCATCT
JMSF038C14+ ATTGCCAAATTGCATGCAGTTCGATAACTACGAATCAAGTTTTGAGGGTGCACTCCATCT
JMFS142B05+ ATTGCCAAATTGCATGCAGTTCGATAACTACGAATCAAGTTTTGAGGGTGCACTCCATCT
JMFF019I22+ GCCAAATTGCATGCAGTTCGATAACTACGAATCAAGTTTTGAGGGTGCACTCCATCT
____________________________________________________________
consensus ATTGCCAAATTGCATGCAGTTCGATAACTACGAATCAAGTTTTGAGGGTGCACTCCATCT
. : . : . : . : . : . :
JMSF022L16+ TCAATAAAAGGCTTGGCTTCCTTCAGAAACTCTCCTGCAAGCAGAACAACTGTAGTTGTT
JMSF038C14+ TCAATGTAAGGCTTGGCTTCCTTCAGAAACTCTCCAGCAAGCAGAACAACAGTGGTTGTC
JMFS142B05+ TCAATGTAAGGCTTGGCTTCCTTCAGAAACTCTCCAGCAAGCAGAACAACAGTGGTTGTC
JMFF019I22+ TCAATGTAAGGCTTGGCTTCCTTCAGAAACTCTCCAGCAAGCAGAACAACAGTGGTTGTC
____________________________________________________________
consensus TCAATGTAAGGCTTGGCTTCCTTCAGAAACTCTCCAGCAAGCAGAACAACAGTGGTTGTC
. : . : . : . : . : . :
JMSF022L16+ CCATCCCCAACCTCAGAATCCTGAGATTTGGCAATATCAACAAGTATTTTTGCAGCAGGG
JMSF038C14+ CCGTCACCAACCTCAGAGTCCTGGGACTTGGCAATGTCAACAAGAATTTTGGCAGCAGGG
JMFS142B05+ CCGTCACCAACCTCAGAGTCCTGGGACTTGGCAATGTCAACAAGAATTTTGGCAGCAGGG
JMFF019I22+ CCGTCACCAACCTCAGAGTCCTGGGACTTGGCAATGTCAACAAGAATTTTGGCAGCAGGG
____________________________________________________________
consensus CCGTCACCAACCTCAGAGTCCTGGGACTTGGCAATGTCAACAAGAATTTTGGCAGCAGGG
. : . : . : . : . : . :
JMSF022L16+ TGAACAATGTCCAAAAGCTTCATTATGGTAGCACCATCATTCGAGATAGTAGTGTTTCCC
JMSF038C14+ TGAACAATGTCAAGAAGCTTCATTATAGTGGCACCGTCATTGGAAATGGTGGTGTTTCCC
JMFS142B05+ TGAACAATGTCAAGAAGCTTCATTATAGTGGCACCGTCATTGGAAATGGTGGTGTTTCCC
JMFF019I22+ TGAACAATGTCAAGAAGCTTCATTATAGTGGCACCGTCATTGGAAATGGTGGTGTTTCCC
____________________________________________________________
consensus TGAACAATGTCAAGAAGCTTCATTATAGTGGCACCGTCATTGGAAATGGTGGTGTTTCCC
. : . : . : . : . : . :
JMSF022L16+ TTATCATCGTGGATCAACTTGTCCATACCCCTTGGACCAAGGGTAGTCCTCACTACATCT
JMSF038C14+ TTATCATCATGAATCAACTTGTCCATACCCCTTGGACCAAGCGTAGTCCTTACAACATCC
JMFS142B05+ TTATCATCATGAATCAACTTGTCCATACCCCTTGGACCAAGCGTAGTCCTTACAACATCC
JMFF019I22+ TTATCATCATGAATCAACTTGTCCATACCCCTTGGACCAAGCGTAGTCCTTACAACATCC
____________________________________________________________
consensus TTATCATCATGAATCAACTTGTCCATACCCCTTGGACCAAGCGTAGTCCTTACAACATCC
. : . : . : . : . : . :
JMSF022L16+ GCCACAGCCATACATGCATTTATGTTGCTTACTAACTGTGCCTTCCCTTGAGAAGTATCT
JMSF038C14+ GCAACAGCCATACACGCATTTATATTGCTCACCAACTGTGCCTTCCCTTGAGAAGTATCT
JMFS142B05+ GCAACAGCCATACACGCATTTATATTGCTCACCAACTGTGCCTTCCCTTGAGAAGTATCT
JMFF019I22+ GCAACAGCCATACACGCATTTATATTGCTCACCAACTGTGCCTTCCCTTGAGAAGTATCT
____________________________________________________________
consensus GCAACAGCCATACACGCATTTATATTGCTCACCAACTGTGCCTTCCCTTGAGAAGTATCT
. : . : . : . : . : . :
JMSF022L16+ GTCCCTTCCTTTAGCAATATGATTTGCGGTTGAAGCATAGCCGCCATT
JMSF038C14+ GTCCCTTCCTTAAGCAATATGATTTGTGGTTGCATCATGGCCGCCATTGTTGCCCCTGAC
JMFS142B05+ GTCCCTTCCTTAAGCAATATGATTTGTGGTTGCATCATGGCCGCCATTGTTGCCCCTGAC
JMFF019I22+ GTCCCTTCCTTAAGCAATATGATTTGTGGTTGCATCATGGCCGCCATTGTTGCCCCTGAC
____________________________________________________________
consensus GTCCCTTCCTTAAGCAATATGATTTGTGGTTGCATCATGGCCGCCATTGTTGCCCCTGAC
. : . : . : . : . : . :
JMSF038C14+ TTTGCAGATCGGACGATGTAGTGACTCAGTTAGTCAGTGGTTGGCGGAGAGAGTATCAGA
JMFS142B05+ TTTGCAGATCGGACGATGTAGTGACTCAGTTAGTCAGTGGTTGGCGGAGAGAGTATCAGA
JMFF019I22+ TTTGCAGATCGGACGATGTAGTGACTCAGTTAGTCAGTGGTTGGCGGAGAGAGTATCAGA
____________________________________________________________
consensus TTTGCAGATCGGACGATGTAGTGACTCAGTTAGTCAGTGGTTGGCGGAGAGAGTATCAGA
. : . : . : . : . : . :
JMSF038C14+ GAAGGAAGCAGTATGAAATGCCTGCAGTTT
JMFS142B05+ GAAGGAAGCAGTATGAAATGCCTGCAGTTTAGGGTTTTT
JMFF019I22+ GAAGGAAGCAGTATGAAATGCCTGCAGTTTAGGGTTTTTTGGTTGGACTAGGGGTTATGT
____________________________________________________________
consensus GAAGGAAGCAGTATGAAATGCCTGCAGTTTAGGGTTTTTTGGTTGGACTAGGGGTTATGT