Contig 010213:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF018M13-                TTTATTACCAAATTTGCATCACCAAGTAGATTATTGATTAGCTAGAGATTCCAA
rJMFF010P13-                                              TTATTGATTAGCTAGAGATTCCAA
                      ____________________________________________________________
consensus                   TTTATTACCAAATTTGCATCACCAAGTAGATTATTGATTAGCTAGAGATTCCAA
 
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rJMFF018M13-          ACAACTCACAAACTCAGACAGAAAACATTCCAAACAACACAAGCATAGAGATAAAGTAAT
rJMFF010P13-          ACAACTCACAAACTCAGACAGAAAACATTCCAAACAACACAAGCATAGAGATAAAGTAAT
                      ____________________________________________________________
consensus             ACAACTCACAAACTCAGACAGAAAACATTCCAAACAACACAAGCATAGAGATAAAGTAAT
 
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rJMFF018M13-          GCTGAAATAATCCAGCGCTCGCAGCTCAACTCTCAAATCCCTAATAATATGAACCATTAG
rJMFF010P13-          GCTGAAATAATCCAGCGCTCGCAGCTCAACTCTCAAATCCCTAATAATATGAACCATTAG
                      ____________________________________________________________
consensus             GCTGAAATAATCCAGCGCTCGCAGCTCAACTCTCAAATCCCTAATAATATGAACCATTAG
 
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rJMFF018M13-          AGCCTAGCTTGATGCAATGTCAAGGACAAATCGAAACTTGACGTCATTCTTTGCAAGCCT
rJMFF010P13-          AGCCTAGCTTGATGCAATGTCAAGGACAAATCGAAACTTGACGTCATTCTTTGCAAGCCT
                      ____________________________________________________________
consensus             AGCCTAGCTTGATGCAATGTCAAGGACAAATCGAAACTTGACGTCATTCTTTGCAAGCCT
 
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rJMFF018M13-          ATCAAAGGCTTCATTTATTTTGTTAATAGGGACAATCTCTATCTCTGGCAAGATCTCATA
rJMFF010P13-          ATCAAAGGCTTCATTTATTTTGTTAATAGGGACAATCTCTATCTCTGGCAAGATCTCATA
                      ____________________________________________________________
consensus             ATCAAAGGCTTCATTTATTTTGTTAATAGGGACAATCTCTATCTCTGGCAAGATCTCATA
 
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rJMFF018M13-          -TTCTCACAGAACTCCATCATTTCTTTAATTTCCTCCACACTTCCAATTATGCTTCCCTT
rJMFF010P13-          TTTCTCACAGAACTCCATCATTTCTTTAATTTCCTCCACACTTCCAATTATGCTTCCCTT
                      ____________________________________________________________
consensus             TTTCTCACAGAACTCCATCATTTCTTTAATTTCCTCCACACTTCCAATTATGCTTCCCTT
 
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rJMFF018M13-          TATCGTTATCTTGCCACATATCAAAGGTAATGATGGGAAATCGATTGGTTTAGATGGTGC
rJMFF010P13-          TATCGTTATCTTGCCACATATCAAAGGTAATGATGGGAAATCGATTGGTTTAGATGGTGC
                      ____________________________________________________________
consensus             TATCGTTATCTTGCCACATATCAAAGGTAATGATGGGAAATCGATTGGTTTAGATGGTGC
 
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rJMFF018M13-          ACCAACAATAGCCAAGGTGCCATCTACTTTCAATAGCTCAATGTAAGGTCCAACAGAGTG
rJMFF010P13-          ACCAACAATAGCCAAGGTGCCATCTACTTTCAATAGCTCAATGTAAGGTCCAACAGAGTG
                      ____________________________________________________________
consensus             ACCAACAATAGCCAAGGTGCCATCTACTTTCAATAGCTCAATGTAAGGTCCAACAGAGTG
 
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rJMFF018M13-          GTTTGCAGATACAGTGTCCAAAATGAAGTCTAGACTTCTTCTATTTCCCTGCATTTGTGT
rJMFF010P13-          GTTTGCAGATACAGTGTCCAAAATGAAGTCTAGACTTCTTCTATTTCCCTGCATTTGTGT
                      ____________________________________________________________
consensus             GTTTGCAGATACAGTGTCCAAAATGAAGTCTAGACTTCTTCTATTTCCCTGCATTTGTGT
 
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rJMFF018M13-          TGGGTCAGTGCTCAATATAAAATCATCTGCTCCCAATCTCTGAATTGCCAATTCTTTCTT
rJMFF010P13-          TGGGTCAGTGCTCAATATAAAATCATCTGCTCCCAATCTCTGAATTGCCAATTCTTTCTT
                      ____________________________________________________________
consensus             TGGGTCAGTGCTCAATATAAAATCATCTGCTCCCAATCTCTGAATTGCCAATTCTTTCTT
 
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rJMFF018M13-          AGAAGAAGAGGTACTAATGACAGTGACCTGGTGCCCAAAAGCCTTGCCAAATTTGACAGC
rJMFF010P13-          AGAAGAAGAGGTACTAATGACAGTGACCTGGTGCCCAAAAGCCTTGCCAAATTTGACAGC
                      ____________________________________________________________
consensus             AGAAGAAGAGGTACTAATGACAGTGACCTGGTGCCCAAAAGCCTTGCCAAATTTGACAGC
 
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rJMFF018M13-          CATGTGACCTAAACCACCTAAACCAATCACTCCAATTCTTTTCCCAGGACACCCAAATAT
rJMFF010P13-          CATGTGACCTAAACCACCTAAACCAATCACTCCAATTCTTTTCCCAGGACACTCAAATAT
                      ____________________________________________________________
consensus             CATGTGACCTAAACCACCTAAACCAATCACTCCAATTCTTTTCCCAGGACACTCAAATAT
 
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rJMFF018M13-          GTTGCTATTTTTCATAGCACTGTACACCGTTATCCCTGCTACTAGTAACNGTGCTGCTCT
rJMFF010P13-          GTTGCTATTTTTCATAGCACTGTACACCGTTATCCCTGCTACTAGTAACGGTGCTGCTCT
JMFF010P13+                                                     TAGTAACGGTGCTGCTCT
JMFF018M13+                                                     TAGTAACGGTGCTGCTCT
                      ____________________________________________________________
consensus             GTTGCTATTTTTCATAGCACTGTACACCGTTATCCCTGCTACTAGTAACGGTGCTGCTCT
 
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rJMFF018M13-          CTCAAG                                                      
rJMFF010P13-          CTCAAGTGCCAGATTCTCTGGTATGTGCACACAATACCTATGATCTGCTACAATC     
JMFF010P13+           CTCAAGTGCCAGATTCTNTGGTATGTGCACACAATACCTATGATCTGCTACAATCATTTG
JMFF018M13+           CTCAAGTGCCAGATTCTCTGGTATGTGCACACAATACCTATGATCTGCTACAATCATTTG
                      ____________________________________________________________
consensus             CTCAAGTGCCAGATTCTCTGGTATGTGCACACAATACCTATGATCTGCTACAATCATTTG
 
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JMFF010P13+           GGAGTAACCTCCGTACGTGACAGTACCATCTGAAGCAACACTATTGTAAACGGGGCGCAT
JMFF018M13+           GGAGTAACCTCCGTACGTGACAGTACCATCTGAAGCAACACTATTGTAAACGGGGCGCAT
                      ____________________________________________________________
consensus             GGAGTAACCTCCGTACGTGACAGTACCATCTGAAGCAACACTATTGTAAACGGGGCGCAT
 
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JMFF010P13+           TTGGTCGCAGTAGTGCTCTCTTGAGGTATTGCAGAGCTCAAAGTCCAAACAAGAAGAAGA
JMFF018M13+           TTGGTCGCAGTAGTGCTCTCTTGAGGTATTGCAGAGCTCACAGTCCAAACAAGAAGAAGA
                      ____________________________________________________________
consensus             TTGGTCGCAGTAGTGCTCTCTTGAGGTATTGCAGAGCTCACAGTCCAAACAAGAAGAAGA
 
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JMFF010P13+           TACATAGCCTACACCAACCCTATCCCCAATCTTGAAATTGCTCACATTGCTTCCTGTCTT
JMFF018M13+           TACATAGCCTACACCAACCCTATCCCCAATCTTGAAATTGCTCACATTGCTTCCTGTCTT
                      ____________________________________________________________
consensus             TACATAGCCTACACCAACCCTATCCCCAATCTTGAAATTGCTCACATTGCTTCCTGTCTT
 
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JMFF010P13+           TGTTACAATTCCTACAATTTCATACCCAGGCACAATAGGATACGTGGTGTTTCCAAAATC
JMFF018M13+           TGTTACAATTCCTACAATTTCATACCCAGGCACAATAGGATACGTGGTGTTTCCAAAATC
                      ____________________________________________________________
consensus             TGTTACAATTCCTACAATTTCATACCCAGGCACAATAGGATACGTGGTGTTTCCAAAATC
 
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JMFF010P13+           ATTTTTGGCAAATTGAACATCACCTCGGCACATTCCGCAATACATGATCTTGATAGTCAC
JMFF018M13+           ATTTTTGGCAAATTGAACATCACCTCGGCACATTCCGCAATACATGATCTTGATAGTCAC
                      ____________________________________________________________
consensus             ATTTTTGGCAAATTGAACATCACCTCGGCACATTCCGCAATACATGATCTTGATAGTCAC
 
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JMFF010P13+           ATCGTTGACACCATTTTCCCTTCGCGTGAATATAAACGGTGATAACTTTCCGGTAGCATC
JMFF018M13+           ATCGTTGACACCATTTTCCCTTCGCGTGAATATAAACGGTGATAACTTTCCGGTAGCATC
                      ____________________________________________________________
consensus             ATCGTTGACACCATTTTCCCTTCGCGTGAATATAAACGGTGATAACTTTCCGGTAGCATC
 
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JMFF010P13+           GTGAGCCGCCCAGCCAAGCACTTCCGGTGTATGAATGGCAGTTTCCATAGCCATTAATTA
JMFF018M13+           GTGAGCCGCCCAGCCAAGCACTTCCGGTGTATGAATGGCAGTTTCCATAGCCATTAATTA
                      ____________________________________________________________
consensus             GTGAGCCGCCCAGCCAAGCACTTCCGGTGTATGAATGGCAGTTTCCATAGCCATTAATTA
 
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JMFF010P13+           ACGAGGAGAAGAATGTGGGATAACTAATTTGATTACTCTTCTTGCTAACTACTCAA    
JMFF018M13+           ACGAGGAGAAGAATGTGGGATAACTAATTTGATTACTCTTCTTGCTAACTACTCAATCAT
                      ____________________________________________________________
consensus             ACGAGGAGAAGAATGTGGGATAACTAATTTGATTACTCTTCTTGCTAACTACTCAATCAT