Contig 010212:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018K19Sequence557010212 (2)755020178ref|XP_009785469.1|2e-57PREDICTED: transcription factor bHLH122-like [Nicotiana sylvestris] ref|XP_00978
JMSF016E18Sequence409010212 (2)ref|XP_006365809.1|9e-14PREDICTED: transcription factor bHLH128-like isoform X1 [Solanum tuberosum] ref753023488ref|XP_009785469.1|2e-61PREDICTED: transcription factor bHLH122-like [Nicotiana sylvestris] ref|XP_00978

Alignment

This contig is upended


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JMSF016E18+                                                      TAGACTGGCCATGAACC
                      ____________________________________________________________
consensus                                                        TAGACTGGCCATGAACC
 
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JMSF016E18+           TCCCGAAAGCTTGCTGCACATNGGAGCTAGAATTATGAGCATTTAGCAGCTGATCGAAAT
                      ____________________________________________________________
consensus             TCCCGAAAGCTTGCTGCACATNGGAGCTAGAATTATGAGCATTTAGCAGCTGATCGAAAT
 
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JMSF016E18+           CGTCCCTTGCATAACCTCCGCCGCCGCCGATACCGCTAGTATCAGAAGTATTACTGTTCA
                      ____________________________________________________________
consensus             CGTCCCTTGCATAACCTCCGCCGCCGCCGATACCGCTAGTATCAGAAGTATTACTGTTCA
 
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JMSF016E18+           AATAGCTTGCGAAATATGAACTTGGCGCGGACCGGTACCGCGTCAAGCCGGAAGTCATNT
JMFF018K19+                                                      CAAGCCGGAAGTCATCT
                      ____________________________________________________________
consensus             AATAGCTTGCGAAATATGAACTTGGCGCGGACCGGTACCGCGTCAAGCCGGAAGTCATCT
 
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JMSF016E18+           GCTGCTGCTGTTGCTGATATCGCCTTTGATCCATGACAACTTTTCCTCGTTTTTTCCCCG
JMFF018K19+           GCTGCTGCTGTTGCTGATATCGCCTTTGATCCATGACAACTTTTCCTCGTTTTTTCCCCG
                      ____________________________________________________________
consensus             GCTGCTGCTGTTGCTGATATCGCCTTTGATCCATGACAACTTTTCCTCGTTTTTTCCCCG
 
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JMSF016E18+           GNGTCAATTNTTAGTAAACTCCAAAACNCAAGAAAAAAAAAATTCCCAGAAATAACAAGA
JMFF018K19+           GCGTCAATTNTTAGTAAACTCCAAAACNCAAGAAAAAAAAAATTCCCAGAAATAACAAGA
                      ____________________________________________________________
consensus             GCGTCAATTNTTAGTAAACTCCAAAACNCAAGAAAAAAAAAATTCCCAGAAATAACAAGA
 
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JMSF016E18+           AGAATGTTCAAATAATTTTGAAGAGAACTCAAGGCGCACAAGCTAGAGGTCTAGATTCCA
JMFF018K19+           AGAATGTTCAAATAATTTTGAAGAGAACTCAAGGCGCACAAGCTAGAGGTCTAGATTCCA
                      ____________________________________________________________
consensus             AGAATGTTCAAATAATTTTGAAGAGAACTCAAGGCGCACAAGCTAGAGGTCTAGATTCCA
 
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JMSF016E18+           GAATGCCCTTTCCTTTACTTTAATATCAG                               
JMFF018K19+           GAATGCCCTTTCCTTTACTTTAATATCAGTTGTTTTCGAACAAAGTATATGTGAATAATA
                      ____________________________________________________________
consensus             GAATGCCCTTTCCTTTACTTTAATATCAGTTGTTTTCGAACAAAGTATATGTGAATAATA
 
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JMFF018K19+           AAAGCAATGAACCCAGCAAAGAAGATAAGATAGAAAACGATATAAACCACTGAAACAGAG
                      ____________________________________________________________
consensus             AAAGCAATGAACCCAGCAAAGAAGATAAGATAGAAAACGATATAAACCACTGAAACAGAG
 
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JMFF018K19+           AATCTGTTTCCAAATTCCCCAGACAACAAAACAACAAACTGCAACACGACACAGAATTGA
                      ____________________________________________________________
consensus             AATCTGTTTCCAAATTCCCCAGACAACAAAACAACAAACTGCAACACGACACAGAATTGA
 
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JMFF018K19+           AGCGAAACCTCTCTCTTCCTTCCTCTTGTTTATTAACCCAAAAGTCACCGGAGAAAAGGA
                      ____________________________________________________________
consensus             AGCGAAACCTCTCTCTTCCTTCCTCTTGTTTATTAACCCAAAAGTCACCGGAGAAAAGGA
 
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JMFF018K19+           GCCCCGTGGCGGCGACGCCGTGAAGGTGGTGGCAGCGGAGGAGGAGAGAAGAGAAGAGAA
                      ____________________________________________________________
consensus             GCCCCGTGGCGGCGACGCCGTGAAGGTGGTGGCAGCGGAGGAGGAGAGAAGAGAAGAGAA
 
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JMFF018K19+           GAGAAGTGGAGAAGTGTGCAGCCAATGAGAAGGCAAGCACAACAGAGATCTCGGGGTTTC
                      ____________________________________________________________
consensus             GAGAAGTGGAGAAGTGTGCAGCCAATGAGAAGGCAAGCACAACAGAGATCTCGGGGTTTC