| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017P04 | Sequence | 553 | 010204 (5) | ref|XP_006352343.1| | 1e-56 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum] | 342 | 002847 (3) | |||
| JMFF017P11 | Sequence | 544 | 010204 (5) | ref|XP_009775500.1| | 1e-49 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Nicotiana sylvestris | |||||
| JMFS107F01 | Sequence | 625 | 010204 (5) | ref|XP_009775500.1| | 8e-121 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Nicotiana sylvestris | |||||
| JMSF011B03 | Sequence | 281 | 010204 (5) | ref|XP_003594254.1| | 3e-29 | RNA-binding protein, putative [Medicago truncatula] | 754 | 002847 (3) | ref|XP_009625288.1| | 6e-11 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Nicotiana tomentosif |
| JMSF021N02 | Sequence | 696 | 010204 (5) | ref|XP_009775500.1| | 1e-110 | PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Nicotiana sylvestris | 760 | 002847 (3) | emb|CDP04502.1| | 2e-11 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFS107F01+ GTACTCTGTTCAAG
____________________________________________________________
consensus GTACTCTGTTCAAG
. : . : . : . : . : . :
JMFS107F01+ CCACCAAAGTTATATGGTCCTAATGGACTTCGGATTGGCCCTGGAGATTGCTCCTTAGGA
____________________________________________________________
consensus CCACCAAAGTTATATGGTCCTAATGGACTTCGGATTGGCCCTGGAGATTGCTCCTTAGGA
. : . : . : . : . : . :
JMSF021N02+ ACAGCTCGCTTTACCTCAACCATTTTGCCATTAAGTTCATGAAACGTTTTGTACAAAACT
JMFS107F01+ ACAGCTCGCTTTACCTCAACCATTTTGCCATTAAGTTCATGAAACGTTTTGTACAAAACT
____________________________________________________________
consensus ACAGCTCGCTTTACCTCAACCATTTTGCCATTAAGTTCATGAAACGTTTTGTACAAAACT
. : . : . : . : . : . :
JMSF021N02+ TTATCCACTGCTTCCTCCGAGTCGTAAGTAATAAATCCAAATCCCCTAGGCCTTTGTGTG
JMFS107F01+ TTATCCACTGCTTCCTCCGAGTCGTAAGTAATAAATCCAAATCCCCTAGGCCTTTGTGTG
____________________________________________________________
consensus TTATCCACTGCTTCCTCCGAGTCGTAAGTAATAAATCCAAATCCCCTAGGCCTTTGTGTG
. : . : . : . : . : . :
JMSF021N02+ TTGTGGTCATACATCACCACGACATCCGTGATCATCCCAAATTGATCAAAGTACCTCTTG
JMFS107F01+ TTGTGGTCATACATCACCACGACATCCGTGATCATCCCAAATTGATCAAAGTACCTCTTG
____________________________________________________________
consensus TTGTGGTCATACATCACCACGACATCCGTGATCATCCCAAATTGATCAAAGTACCTCTTG
. : . : . : . : . : . :
JMSF021N02+ AAATCACTCTCGGTAACTGAAGATGCCAAACCTCCCACAAAAATCTTCTTTGTGCGAATG
JMFS107F01+ AAATCACTCTCGGTAACTGAAGATGCCAAACCTCCCACAAAAATCTTCTTTGTGCGAATG
____________________________________________________________
consensus AAATCACTCTCGGTAACTGAAGATGCCAAACCTCCCACAAAAATCTTCTTTGTGCGAATG
. : . : . : . : . : . :
JMSF021N02+ GAACCTGGTGAAGAATGCATAACTCCACTATTTCTGTTCCCATGGTGGTCATCCCTAGGT
JMFS107F01+ GAACCTGGTGAAGACTGCATAACTCCACTATTTCTGTTCCCATGGTGGTCATCCCTAGGT
JMFF017P04+ TCCCTAGGT
JMFF017P11+ TCATCCCTAGGT
____________________________________________________________
consensus GAACCTGGTGAAGACTGCATAACTCCACTATTTCTGTTCCCATGGTGGTCATCCCTAGGT
. : . : . : . : . : . :
JMSF021N02+ ACAGCCTTCTTTGCCTCTACGGTTCTTCCATCAATCATGTGTTTTTCCTTGACAACTCTT
JMFS107F01+ ACAGCCTTCTTTGCCTCTACGGTTCTTCCATCAATCATGTGTTTTTCCTTGACAACTCTT
JMFF017P04+ ACAGCCTTCTTTGCCTCTACGGTTCTTCCATCAATCATGTGTTTTTCCTTGACAACTCTT
JMFF017P11+ ACAGCCTTCTTTGCCTCTACAGTTCTGCCATCAATCATGTGTTTTTCTTTGACAACTCTT
____________________________________________________________
consensus ACAGCCTTCTTTGCCTCTACGGTTCTTCCATCAATCATGTGTTTTTCCTTGACAACTCTT
. : . : . : . : . : . :
JMSF021N02+ TCAGCAACAGAAGGATCAGCAAAAACAACAAAACCAAAACCACGGGCACGACCAGTGGTT
JMFS107F01+ TCAGCAACAGAAGGATCAGCAAAAACAACAAAACCAAAACCACGGGCACGACCAGTGGTT
JMSF011B03+ TCAGCAACAGAAGGATCAGCAAAAACAACAAAACCAAAACCACGGGCACGACCAGTGGTT
JMFF017P04+ TCAGCAACAGAAGGATCAGCAAAAACAACAAAACCAAAACCACGGGCACGACCAGTGGTT
JMFF017P11+ TCAGCAACAGAAGGATCCTCGAAAACAACAAAACCAAAACCGCGGGCACGGCCTGTGGCA
____________________________________________________________
consensus TCAGCAACAGAAGGATCAGCAAAAACAACAAAACCAAAACCACGGGCACGACCAGTGGTT
. : . : . : . : . : . :
JMSF021N02+ CGATCTTTCATGATCACTGCCTCAACTATTTCACCAAATGCTTGGAAATACTCTCGGAGA
JMFS107F01+ CGATCTTTCATGATCACTGCCTCAACTATTTCACCAAATGCTTGGAAATACTCTCGGAGA
JMSF011B03+ CGATCTTTCATGATCACTGCCTCAACTATTTCACCAAATGCTTGGAAATACTCTCGGAGA
JMFF017P04+ CGATCTTTCATGATCACTGCCTCAACTATTTCACCAAATGCTTGGAAATACTCTCGGAGA
JMFF017P11+ CGATCCTTCATGATCACTGCCTCGACTACTTCTCCAAATGTTTGGAAATACTCTTTGAGA
____________________________________________________________
consensus CGATCTTTCATGATCACTGCCTCAACTATTTCACCAAATGCTTGGAAATACTCTCGGAGA
. : . : . : . : . : . :
JMSF021N02+ CCATCTTCATTGGTGTCCCAAGAAATTCCACCAACAAATAATTTTCCAGGCTCCATT
JMFS107F01+ CCATCTTCATTGGTGTCCCAAGAAATTCCACCAACAAATAATTTTCCAGGCTCCATTTTC
JMSF011B03+ CCATCTTCATTGGTGTCCCAAGAAATTCCACCAACAAATAATTTTCCAGGCTCCATTTTC
JMFF017P04+ CCATCTTCATTGGTGTCCCAAGAAATTCCACCAACAAATAATTTTCCAGGCTCCATTTTC
JMFF017P11+ CGGCCTTCATTGGTGTCCCATGAAATCCCTCCAACAAACAATTTTCCAGGCTCCATTGCC
____________________________________________________________
consensus CCATCTTCATTGGTGTCCCAAGAAATTCCACCAACAAATAATTTTCCAGGCTCCATTTTC
. : . : . : . : . : . :
JMFS107F01+ AATCAAACGGA
JMSF011B03+ AATCAAACGGAGAAGACCCAGATGACAAATGAATAGAATTCAAGATCTGAAGCGAGGCAT
JMFF017P04+ AATCAAACGGAGAAGACCCAGATGACAAATGAATAGAATTCAAGATCTGAAGCGAGGCAT
JMFF017P11+ ATCCAAAGGGCGAAGA--CAGATGACAAGCGGGCAAAATTCAAGATCTGAGGAGAGGCAT
____________________________________________________________
consensus AATCAAACGGAGAAGACCCAGATGACAAATGAATAGAATTCAAGATCTGAAGCGAGGCAT
. : . : . : . : . : . :
JMSF011B03+ ATATA
JMFF017P04+ ATATAGAGAAGAGGGCTAGAAAGGCCCTCTCTTTTCCTCTCGCTTTCTTTGCTTT
JMFF017P11+ ATGCA-AGCAGAGGGCTGGAAAGGCCCTCTCTTTTCCTCTCGCTCTGTTTTTGCTCCAAA
____________________________________________________________
consensus ATATAGAGCAGAGGGCTGGAAAGGCCCTCTCTTTTCCTCTCGCTTTGTTTTTTTTCCAAA
. : . : . : . : . : . :
JMFF017P11+ ATCAAATTTTTGGTTCAATCATTCCGGTGCATAATGAATATATAGAAAGAGATAAAGAAG
____________________________________________________________
consensus ATCAAATTTTTGGTTCAATCATTCCGGTGCATAATGAATATATAGAAAGAGATAAAGAAG
. : . : . : . : . : . :
JMFF017P11+ GGAGAGAGAGAAAGAAATTGTATCAATGGTGAGGAAAGGAAGAGAGGGTAAGAGAAGGAT
____________________________________________________________
consensus GGAGAGAGAGAAAGAAATTGTATCAATGGTGAGGAAAGGAAGAGAGGGTAAGAGAAGGAT