Contig 010203:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017P05Sequence234010203 (2)emb|CDP10336.1|2e-12unnamed protein product [Coffea canephora]753010203 (2)emb|CDP10336.1|2e-90unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF017P05-                                              CTTTTTCCTTTGATTCATTGTAGT
                      ____________________________________________________________
consensus                                                 CTTTTTCCTTTGATTCATTGTAGT
 
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rJMFF017P05-          TCATAATATGTTCAGTCACTTACAAGATATGAATACCATTTTGCTGGTAACTTTAAAATC
                      ____________________________________________________________
consensus             TCATAATATGTTCAGTCACTTACAAGATATGAATACCATTTTGCTGGTAACTTTAAAATC
 
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rJMFF017P05-          CCTCACAAATAAACAACCCCTTGACTTGACTCAGCCAACTACTTAGAAAGAAATCCAGTT
                      ____________________________________________________________
consensus             CCTCACAAATAAACAACCCCTTGACTTGACTCAGCCAACTACTTAGAAAGAAATCCAGTT
 
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rJMFF017P05-          AGTTACCTAGAACAACAATAACCTTTGTTTTGTTTCACTCCATCATTGTCATCATTCACA
                      ____________________________________________________________
consensus             AGTTACCTAGAACAACAATAACCTTTGTTTTGTTTCACTCCATCATTGTCATCATTCACA
 
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rJMFF017P05-          ATGCTGACTCTGTTGACAGATAATTCTGCTTTATAAGAATCTGAGTTCAAAACCTTCCTG
                      ____________________________________________________________
consensus             ATGCTGACTCTGTTGACAGATAATTCTGCTTTATAAGAATCTGAGTTCAAAACCTTCCTG
 
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rJMFF017P05-          CTAACGTTACTATATATCTCTCGGATAACAACCTCAAATGCCCGTTTTACGTTCCTGGAA
                      ____________________________________________________________
consensus             CTAACGTTACTATATATCTCTCGGATAACAACCTCAAATGCCCGTTTTACGTTCCTGGAA
 
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rJMFF017P05-          TCCAGCGCCGATGTCTCCATAAAGAACAGCCCCTCTGCTTCTGCAACGCTTTTCCCCTCT
                      ____________________________________________________________
consensus             TCCAGCGCCGATGTCTCCATAAAGAACAGCCCCTCTGCTTCTGCAACGCTTTTCCCCTCT
 
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rJMFF017P05-          TCAACGCTCACCTCCCTGATGTTCTCCAAATCACATTTATTGCCCACAAGCATCCTTGCA
                      ____________________________________________________________
consensus             TCAACGCTCACCTCCCTGATGTTCTCCAAATCACATTTATTGCCCACAAGCATCCTTGCA
 
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rJMFF017P05-          ACAGTAGTATCAGAATGAGTATTAAGTTCGTCAAGCCAACGCGGAATGCTATCNAAGGTG
                      ____________________________________________________________
consensus             ACAGTAGTATCAGAATGAGTATTAAGTTCGTCAAGCCAACGCGGAATGCTATCNAAGGTG
 
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rJMFF017P05-          GTGCGGCGGCTGATGTCGTAGACGACGAGAGCGCCAAACGCGCCGCGGTAGTAAGCCGAT
                      ____________________________________________________________
consensus             GTGCGGCGGCTGATGTCGTAGACGACGAGAGCGCCAAACGCGCCGCGGTAGTAAGCCGAT
 
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rJMFF017P05-          GTAACAGCCCGGAAGCGCTCCTGGGCCGGCGGTGTCCCAAATCTGGGCCTTCACCTCCTT
                      ____________________________________________________________
consensus             GTAACAGCCCGGAAGCGCTCCTGGGCCGGCGGTGTCCCAAATCTGGGCCTTCACCTCCTT
 
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rJMFF017P05-          GCCGTCGATTTGGAGGGTCTGGGTCTGAAACTCAACCCCGATGGTGGCCTTGGAGTGCAG
                      ____________________________________________________________
consensus             GCCGTCGATTTGGAGGGTCTGGGTCTGAAACTCAACCCCGATGGTGGCCTTGGAGTGCAG
 
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rJMFF017P05-          GTTGAACTCGTTCCTGGCGTANCGGGAAAGCAAGTTGGACTTCCCCACCGCAGAGTCCCC
JMFF017P05+                     TTCCTGGCGTAGCGGGAAAGCAGGTTGGACTTCCCCACCGCAGAGTCCCC
                      ____________________________________________________________
consensus             GTTGAACTCGTTCCTGGCGTAGCGGGAAAGCAGGTTGGACTTCCCCACCGCAGAGTCCCC
 
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rJMFF017P05-          GATGATCAC                                                   
JMFF017P05+           GATGATCACTATCTTGAAGAGGTACTCCTCCCCCTCCTCGTCGGAAGAACCCATNTAAGC
                      ____________________________________________________________
consensus             GATGATCACTATCTTGAAGAGGTACTCCTCCCCCTCCTCGTCGGAAGAACCCATNTAAGC
 
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JMFF017P05+           TCAGAGAGAGAAATGGAGATCTAGATAGAGAAAACGAGAAAAAAACGGCGTGGCGGTGAA
                      ____________________________________________________________
consensus             TCAGAGAGAGAAATGGAGATCTAGATAGAGAAAACGAGAAAAAAACGGCGTGGCGGTGAA
 
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JMFF017P05+           CGGTGGAGGCGGGATGTTGGATTGCTGTCCGAAAGAAAGATAATAGTGGGAGGCGCTGGC
                      ____________________________________________________________
consensus             CGGTGGAGGCGGGATGTTGGATTGCTGTCCGAAAGAAAGATAATAGTGGGAGGCGCTGGC