Contig 010199:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016O24Sequence622010199 (2)emb|CDP19036.1|5e-54unnamed protein product [Coffea canephora]706009673 (3)
JMSF047N12Sequence652014767ref|XP_009624416.1|9e-28PREDICTED: nuclear transcription factor Y subunit A-1-like [Nicotiana tomentosi792010199 (2)ref|XP_009617199.1|9e-54PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Nicotian

Alignment

This contig is upended


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rJMSF047N12-                                   ATCAAATTCAGCTCCACAGGTGGAGGACTTTTAAG
                      ____________________________________________________________
consensus                                      ATCAAATTCAGCTCCACAGGTGGAGGACTTTTAAG
 
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rJMSF047N12-          CTATGTCTATGTGAGAAAAGAAAATGCAAGCAGTAATGGTAGACGCTCTTCCTGCCTACA
                      ____________________________________________________________
consensus             CTATGTCTATGTGAGAAAAGAAAATGCAAGCAGTAATGGTAGACGCTCTTCCTGCCTACA
 
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rJMSF047N12-          CTTTAGATGGTCTCTCCTACCTACATAACACAACCCAATCTAAATCCTACCAATCTTTAT
                      ____________________________________________________________
consensus             CTTTAGATGGTCTCTCCTACCTACATAACACAACCCAATCTAAATCCTACCAATCTTTAT
 
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rJMSF047N12-          ACAGAGGGAAGAACACAGCGAAAATCGCGAGAAACTAAAAGGCCAACAACACTCCGCCCC
                      ____________________________________________________________
consensus             ACAGAGGGAAGAACACAGCGAAAATCGCGAGAAACTAAAAGGCCAACAACACTCCGCCCC
 
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rJMSF047N12-          CTTCCTAAACCATAACAAAGCCAAGAATGATTTGCCGCCCAGCTTGAAAAAGCTAAGATC
                      ____________________________________________________________
consensus             CTTCCTAAACCATAACAAAGCCAAGAATGATTTGCCGCCCAGCTTGAAAAAGCTAAGATC
 
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rJMSF047N12-          GAGAACAACTCCACTTCTGTTGTCTTCCTATGCTGCGTTAGTTGCAATACTCCCCCGTCC
                      ____________________________________________________________
consensus             GAGAACAACTCCACTTCTGTTGTCTTCCTATGCTGCGTTAGTTGCAATACTCCCCCGTCC
 
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rJMSF047N12-          ACCTGATGAACCTCCAACGTAGTAACTGCTGCCTCCATTTATCGATGGAAGTTGGGGATC
                      ____________________________________________________________
consensus             ACCTGATGAACCTCCAACGTAGTAACTGCTGCCTCCATTTATCGATGGAAGTTGGGGATC
 
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rJMSF047N12-          GGGCGCCTTTGCTGCTTGATGGGTTTTTGAAGCATCGGCAGCTGCACCAGAGCCTGTTTC
                      ____________________________________________________________
consensus             GGGCGCCTTTGCTGCTTGATGGGTTTTTGAAGCATCGGCAGCTGCACCAGAGCCTGTTTC
 
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rJMSF047N12-          TTTCGAAGCAGCTGTCTCAGATCTCTTTGCAAAACGCCCTCCAGTACCCCTAGCCCTCTT
                      ____________________________________________________________
consensus             TTTCGAAGCAGCTGTCTCAGATCTCTTTGCAAAACGCCCTCCAGTACCCCTAGCCCTCTT
 
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rJMSF047N12-          CAAAGCATGCTGATGTCGGGACTCGTGAAGATACGGCTTTCTAACTTTTATTAGCTTCTT
                      ____________________________________________________________
consensus             CAAAGCATGCTGATGTCGGGACTCGTGAAGATACGGCTTTCTAACTTTTATTAGCTTCTT
 
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rJMSF047N12-          TTGAGATTCTGCTTTAGCACGTGACTCTCTCCTCCGGAGGATCCCATGATACTGCTTGGC
JMFF016O24+                                                   ATCCCATGATACTGCTTGGC
                      ____________________________________________________________
consensus             TTGAGATTCTGCTTTAGCACGTGACTCTCTCCTCCGGAGGATCCCATGATACTGCTTGGC
 
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rJMSF047N12-          ATTCACGTAAACGGGCTCTTGAGTCATTTCAAGTGGCAAAGGCATC              
JMFF016O24+           ATTCACATAAACGGGCTCTTGAGTCATTTCGAGGGGCAAAGGCATCNTCATACGGTGCAT
                      ____________________________________________________________
consensus             ATTCACGTAAACGGGCTCTTGAGTCATTTCGAGTGGCAAAGGCATCNTCATACGGTGCAT
 
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JMFF016O24+           ATCAAGTATATCAGGAGGAACCAATGGTTGACCATAAGCAGCTATCATTTGCCCAAAATA
                      ____________________________________________________________
consensus             ATCAAGTATATCAGGAGGAACCAATGGTTGACCATAAGCAGCTATCATTTGCCCAAAATA
 
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JMFF016O24+           CGGGTCAATGTATGGATTTGGAGCACAAGCAATTGAATGTCCAACAAATTCAAGCTGTTG
                      ____________________________________________________________
consensus             CGGGTCAATGTATGGATTTGGAGCACAAGCAATTGAATGTCCAACAAATTCAAGCTGTTG
 
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JMFF016O24+           TGGCTGTGTTAGGTGCTCATCACTTCCATCTGGAATGACTGATGCAACTTGCTGAAGATT
                      ____________________________________________________________
consensus             TGGCTGTGTTAGGTGCTCATCACTTCCATCTGGAATGACTGATGCAACTTGCTGAAGATT
 
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JMFF016O24+           CTTATCTACTTGTCCTCCACAACTTCCTTGAAGCGAAGGTTTGCTAGTTTGTGATTTTTC
                      ____________________________________________________________
consensus             CTTATCTACTTGTCCTCCACAACTTCCTTGAAGCGAAGGTTTGCTAGTTTGTGATTTTTC
 
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JMFF016O24+           AGTACCGTCATCACCTTCGGGATTTACTCCACCATCAGATTGTGATTGGTCGTCCAGAGA
                      ____________________________________________________________
consensus             AGTACCGTCATCACCTTCGGGATTTACTCCACCATCAGATTGTGATTGGTCGTCCAGAGA
 
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JMFF016O24+           TTGCTCGAGAGAAGACGAATCAGAAGCATCTCCCTGCACCATGCCCGGAGGAACAGAATT
                      ____________________________________________________________
consensus             TTGCTCGAGAGAAGACGAATCAGAAGCATCTCCCTGCACCATGCCCGGAGGAACAGAATT
 
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JMFF016O24+           GTAGCCAGCCGTTTTCCACCAAGGTTCAGCAGAGTCAGCGGAATGAGGAATGTTATGTGG
                      ____________________________________________________________
consensus             GTAGCCAGCCGTTTTCCACCAAGGTTCAGCAGAGTCAGCGGAATGAGGAATGTTATGTGG
 
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JMFF016O24+           ATTGGCTCCCACAAGATTTGCAGTTTTGGAATTCGGTTGCATAATCTTGATGCACTTCGA
                      ____________________________________________________________
consensus             ATTGGCTCCCACAAGATTTGCAGTTTTGGAATTCGGTTGCATAATCTTGATGCACTTCGA
 
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JMFF016O24+           GAACGAAAACCAAATCTCCTGATGCGAGAGAGATTAGTGATTGGATGAAAAATATCTCTT
                      ____________________________________________________________
consensus             GAACGAAAACCAAATCTCCTGATGCGAGAGAGATTAGTGATTGGATGAAAAATATCTCTT