Contig 010197:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF046M06-                                                                  CTTT
                      ____________________________________________________________
consensus                                                                     CTTT
 
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rJMFF046M06-          TTTTTACACTACATCACACTCATATCTCTCTATTATTTATTTATTTTTAAAGTTCGAGTA
rJMFF029J16-                                  TCTCTCTATTATTTATTTATTTTTAAAGTTCGAGTA
                      ____________________________________________________________
consensus             TTTTTACACTACATCACACTCATATCTCTCTATTATTTATTTATTTTTAAAGTTCGAGTA
 
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rJMFF046M06-          CACCACAAAATTAAAAAAACACTAAAATACATACTGAACATTACGGATATCTCATTATTT
rJMFF029J16-          CACCACAAAATTAAAAAAACACTAAAATACATACTGAACATTACGGATATCTCATTATTT
                      ____________________________________________________________
consensus             CACCACAAAATTAAAAAAACACTAAAATACATACTGAACATTACGGATATCTCATTATTT
 
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rJMFF046M06-          TATTATTATAACAATAAATACCCACGCACGGATTTGCGATAAATGAAGAAATTAAAATGG
rJMFF029J16-          TATTATTATAACAATAAATACCCACGCACGGATTTGCGATAAATGAAGAAATTAAAATGG
                      ____________________________________________________________
consensus             TATTATTATAACAATAAATACCCACGCACGGATTTGCGATAAATGAAGAAATTAAAATGG
 
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rJMFF046M06-          GTGGGTGGCTATTATATATCTGATTTTGCTTGCAGATTAAGTTGAAGCAAGGAGCTAATA
rJMFF029J16-          GTGGGTGGCTATTATATATCTGATTTTGCTTGCAGATTAAGTTGAAGCAAGGAGCTAATA
                      ____________________________________________________________
consensus             GTGGGTGGCTATTATATATCTGATTTTGCTTGCAGATTAAGTTGAAGCAAGGAGCTAATA
 
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rJMFF046M06-          TCCATAGGGTAGGCGTCAGTGGGGAGGGTAGCGGTGTATGATCTTGTGGCCGTGCCCAAA
rJMFF029J16-          TCCATAGGGTAGGCGTCAGTGGGGAGGGTAGCGGTGTATGATCTTGTGGCCGTGCCCAAA
                      ____________________________________________________________
consensus             TCCATAGGGTAGGCGTCAGTGGGGAGGGTAGCGGTGTATGATCTTGTGGCCGTGCCCAAA
 
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rJMFF046M06-          TTTCCAATCTCTGTGAGATGAAAATTGTCCCAAAACATATATTCATTTCTGTTGCTGCAT
rJMFF029J16-          TTTCCAATCTCTGTGAGATGAAAATTGTCCCAAAACATATATTCATTTCTGTTGCTGCAT
                      ____________________________________________________________
consensus             TTTCCAATCTCTGTGAGATGAAAATTGTCCCAAAACATATATTCATTTCTGTTGCTGCAT
 
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rJMFF046M06-          GGCACTTGCCCCTCCTCGCACTGCCCCTTTGCTTTCGTTTTTGAAACTTGGCAGCATGCT
rJMFF029J16-          GGCACTTGCCCCTCCTCGCACTGCCCCTTTGCTTTCGTTTTTGAAACTTGGCAGCATGCT
                      ____________________________________________________________
consensus             GGCACTTGCCCCTCCTCGCACTGCCCCTTTGCTTTCGTTTTTGAAACTTGGCAGCATGCT
 
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rJMFF046M06-          TTGTTTACGTTGTTGATGCCGATGATTGACGGATCTCCTAGGGCAAGGCTAGTCATGTTT
rJMFF029J16-          TTGTTTACGTTGTTGATGCCGATGATTGACGGATCTCCTAGGGCAAGGCTAGTCATGTTT
                      ____________________________________________________________
consensus             TTGTTTACGTTGTTGATGCCGATGATTGACGGATCTCCTAGGGCAAGGCTAGTCATGTTT
 
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rJMFF046M06-          ATAAGAATGAATTTTGCGCCTTTTAAGCTGCCATTCAGATCATCTATGATTGGTTTCATC
rJMFF029J16-          ATAAGAATGAATTTTGCGCCTTTTAAGCTGCCATTCAGATCATCTATGATTGGTTTCATC
                      ____________________________________________________________
consensus             ATAAGAATGAATTTTGCGCCTTTTAAGCTGCCATTCAGATCATCTATGATTGGTTTCATC
 
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rJMFF029J16-          CTGTCGTTGAACATCTGAACCGCAGAATTGATCGAATCAACGCAGGAGAGTGATCCGTTG
                      ____________________________________________________________
consensus             CTGTCGTTGAACATCTGAACCGCAGAATTGATCGAATCAACGCAGGAGAGTGATCCGTTG
 
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rJMFF029J16-          CCATGCGTCTCCATCTCCTCCGGAATGCAACCTAGCACGCCTGGCCCAAATACTGCTACT
                      ____________________________________________________________
consensus             CCATGCGTCTCCATCTCCTCCGGAATGCAACCTAGCACGCCTGGCCCAAATACTGCTACT
 
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rJMFF029J16-          TTCCTTGCTCCCAGTGCATGCAATTTCTTTAGCTGCACATAGTGTTTTTTGGCAAGAAGT
                      ____________________________________________________________
consensus             TTCCTTGCTCCCAGTGCATGCAATTTCTTTAGCTGCACATAGTGTTTTTTGGCAAGAAGT
 
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rJMFF029J16-          TCTGCAAATTGGTCTGGGGTGTATAACCTGCTTGAAGGGTACTTCTGANGCATGAGGTAA
JMFN038M06+                                TATAACCTGCTTGAAGGGTACTTCTGAGGCATGAGGTAA
JMFF016G01+                                                     TTCTGAGGCATGAGGTAA
                      ____________________________________________________________
consensus             TCTGCAAATTGGTCTGGGGTGTATAACCTGCTTGAAGGGTACTTCTGAGGCATGAGGTAA
 
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rJMFF029J16-          TTGNTTATGTAGTCATTGTTACC                                     
JMFN038M06+           TTGTTTATGTAGTCATTGTTACCCATTCCTACACTGTAAAAGCACTTGTTTAGATAGTAT
JMFF046M06+                               ACCCATTCCTACACTGTAAAAGCACTTGTTTAGATAGTAT
JMFF016G01+           TTGTTTATGTAGTCATTGTTACCCATTCCTACACTGTAAAAGCACTTGTTTAGATAGTAT
                      ____________________________________________________________
consensus             TTGTTTATGTAGTCATTGTTACCCATTCCTACACTGTAAAAGCACTTGTTTAGATAGTAT
 
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JMFN038M06+           CGAGCAGCGCGGTAACCCTTCATATACAGTGCGATTCTTGCCAATGTCAACCCATGGTTC
JMFF046M06+           CGAGCAGCGCGGTAACCCTTCATATACAGTGCGATTCTTGCCAATGTCAACCCATGGTTC
JMFF029J16+                                  ATACAGTGCGATTCTTGCCAATGTCAACCCATGGTTC
JMFF016G01+           CGAGCAGCGCGGTAACCCTTCATATACAGTGCGATTCTTGCCAATGTCAACCCATGGTTC
                      ____________________________________________________________
consensus             CGAGCAGCGCGGTAACCCTTCATATACAGTGCGATTCTTGCCAATGTCAACCCATGGTTC
 
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JMFN038M06+           ACCAGTTGTTGGTCCATACTGATAACTTCCCCCAT-ATGGGTTCCTGACTCGTCAAGGAT
JMFF046M06+           ACCAGTTGTTGGTCCATACTGATAACTTCCCCCAT-ATGGGTTCCTGACTCGTCAAGGAT
JMFF029J16+           ACCAGTTGTTGGTCCATACTGATAACTTCCCCCAT-ATGGGTTCCTGACTCGTCAAGGAT
JMFF016G01+           ACCAGTTGTTGGTCCATACTGATAACTTCCCCCATAATGGGTTCCTGACTCGTCAAGGAT
                      ____________________________________________________________
consensus             ACCAGTTGTTGGTCCATACTGATAACTTCCCCCAT-ATGGGTTCCTGACTCGTCAAGGAT
 
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JMFN038M06+           TCCACCCGCACCAGATGCATAATTCACACCCTTAAGCAACCCCTCCGTCGTTGTTACGGC
JMFF046M06+           TCCACCCGCACCAGATGCATAATTCACACCCTTAAGCAACCCCTCCGTCGTTGTTACGGC
JMFF029J16+           TCCACCCGCACCAGATGCATAATTCACACCCTTAAGCAACCCCTCCGTCGTTGTTACGGC
JMFF016G01+           TCCACCCGCACCAGATGCATAATTCACACCCTTAAGCAACCCCTCCGTCGTTGTTACGGC
                      ____________________________________________________________
consensus             TCCACCCGCACCAGATGCATAATTCACACCCTTAAGCAACCCCTCCGTCGTTGTTACGGC
 
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JMFN038M06+           GGAATACGGCGGAATGGAGCTGTTGAAGCCAAGGAATTCCGCTAAGTAGTCTGCCAAATT
JMFF046M06+           GGAATACGGCGGAATGGAGCTGTTGAAGCCAAGGAATTCCGCTAAGTAGTCTGCCAAATT
JMFF029J16+           GGAATACGGCGGAATGGAGCTGTTGAAGCCAAGGAATTCCGCTAAGTAGTCTGCCAAATT
JMFF016G01+           GGAATACGGCGGAATGGAGCTGTTGAAGCCAAGGAATTCCGCTAAGTAGTCTGCCAAATT
                      ____________________________________________________________
consensus             GGAATACGGCGGAATGGAGCTGTTGAAGCCAAGGAATTCCGCTAAGTAGTCTGCCAAATT
 
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JMFN038M06+           CTTGCCATTGCTGAATCTACCAGTAGGGCCATCAGGAAAATCAATTCCATAAGGAAGATA
JMFF046M06+           CTTGCCATTGCTGAATCTACCAGTAGGGCCATCAGGAAAATCAATTCCATAAGGAAGATA
JMFF029J16+           CTTGCCATTGCTGAATCTACCAGTAGGGCCATCAGGAAAATCAATTCCATAAGGAAGATA
JMFF016G01+           CTTGCCATTGCTGAATCTACCAGTAGGGCCATCAGGAAAATCAATTCCATAAGGAAGATA
                      ____________________________________________________________
consensus             CTTGCCATTGCTGAATCTACCAGTAGGGCCATCAGGAAAATCAATTCCATAAGGAAGATA
 
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JMFN038M06+           GTTTGCCTTTGCTTCAGTGGAAAGGTTATTGTTGTTGCCATTGTCAACTAAAGAGTCACC
JMFF046M06+           GTTTGCCTTTGCTTCAGTGGAAAGGTTATTGTTGTTGCCATTGTCAACTAAAGAGTCACC
JMFF029J16+           GTTTGCCTTTGCTTCAGTGGAAAGGTTATTGTTGTTGCCATTGTCAACTAAAGAGTCACC
JMFF016G01+           GTTTGCCTTTGCTTCAGTGGAAAGGTTATTGTTGTTGCCATTGTCAACTAAAGAGTCACC
                      ____________________________________________________________
consensus             GTTTGCCTTTGCTTCAGTGGAAAGGTTATTGTTGTTGCCATTGTCAACTAAAGAGTCACC
 
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JMFN038M06+           AAAGATGAAGTAACAAGGGACTTGGGGCTCTGCTACCAGAGGCTTTAAGCTCAAGAACAT
JMFF046M06+           AAAGATGAAGTAACAAGGGACTTGGGGCTCTGCTACCAGAGGCTTTAAGCTCAAGAACAT
JMFF029J16+           AAAGATGAAGTAACAAGGGACTTGGGGCTCTGCTACCAGAGGCTTTAAGCTCAAGAACAT
JMFF016G01+           AAAGATGAAGTAACAAGGGACTTGGGGCTCTGCTACCAGAGGCTTTAAGCTCAAGAACAT
                      ____________________________________________________________
consensus             AAAGATGAAGTAACAAGGGACTTGGGGCTCTGCTACCAGAGGCTTTAAGCTCAAGAACAT
 
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JMFN038M06+           TAGCAGTAGAGTGGCAATGGCAAACCACACCTTAACCCCAGAAGCCATTAATGTAATGGA
JMFF046M06+           TAGCAGTAGAGTGGCAATGGCAAACCACACCTTAACCCCAGAAGCCATTAATGTAATGGA
JMFF029J16+           TAGCAGTAGAGTGGCAATGGCAAACCACACCTTAACCCCAGAAGCCATTAATGTAATGGA
JMFF016G01+           TAGCAGTAGAGTGGCAATGGCAAACCACACCTTAACCCCAGAAGCCATTAATGTAATGGA
                      ____________________________________________________________
consensus             TAGCAGTAGAGTGGCAATGGCAAACCACACCTTAACCCCAGAAGCCATTAATGTAATGGA
 
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JMFN038M06+           GGTATATGTAGCTGAAAATAAAGCTTATAAGAATGAACCAAAG                 
JMFF046M06+           GGTATATGTAGCTGAAAATAAAGCTTATAAGAATGAACCAAAGAGGGGAATGAAAGATGT
JMFF029J16+           GGTATATGTAGCTGAAAATAAAGCTTATAAGAATGAACCAAAGAGGGGAATGAAAGATGT
JMFF016G01+           GGTATATGTAGCTGAAAATAAAGCTTATAAGAATGAACCAAAGAGGGGAATGAAAGATGT
                      ____________________________________________________________
consensus             GGTATATGTAGCTGAAAATAAAGCTTATAAGAATGAACCAAAGAGGGGAATGAAAGATGT