| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016B06 | Sequence | 561 | 010195 (6) | ref|XP_006345083.1| | 1e-34 | PREDICTED: serine protease SPPA, chloroplastic-like isoform X3 [Solanum tuberos | 818 | 004128 (5) | ref|XP_009596648.1| | 9e-99 | PREDICTED: serine protease SPPA, chloroplastic isoform X3 [Nicotiana tomentosif |
| JMFF045P02 | Sequence | 449 | 010195 (6) | 525 | 004128 (5) | ref|XP_006345081.1| | 1e-08 | PREDICTED: serine protease SPPA, chloroplastic-like isoform X1 [Solanum tuberos | |||
| JMSF003L16 | Sequence | 345 | 010195 (6) | ref|XP_006345083.1| | 7e-12 | PREDICTED: serine protease SPPA, chloroplastic-like isoform X3 [Solanum tuberos | |||||
| JMSF004I19 | Sequence | 320 | 010195 (6) | 332 | 004128 (5) | ref|XP_009596646.1| | 8e-11 | PREDICTED: serine protease SPPA, chloroplastic isoform X1 [Nicotiana tomentosif | |||
| JMSF051I01 | Sequence | 673 | 010195 (6) | ref|XP_006345083.1| | 3e-55 | PREDICTED: serine protease SPPA, chloroplastic-like isoform X3 [Solanum tuberos | 726 | 004128 (5) | ref|XP_009596648.1| | 9e-113 | PREDICTED: serine protease SPPA, chloroplastic isoform X3 [Nicotiana tomentosif |
| JMSF051K07 | Sequence | 700 | 010195 (6) | ref|XP_006345083.1| | 8e-69 | PREDICTED: serine protease SPPA, chloroplastic-like isoform X3 [Solanum tuberos | 758 | 004128 (5) | ref|XP_009596648.1| | 3e-94 | PREDICTED: serine protease SPPA, chloroplastic isoform X3 [Nicotiana tomentosif |
This contig is upended
. : . : . : . : . : . :
JMSF051I01+ CATGACAGTGGTTCAATGTGCAGGTAGACACCAGAAATCCGGGGA
JMSF051K07+ CACATGACAGTGGTTCAATGTGCAGGTAGACACCAGAAATCCGGGGA
____________________________________________________________
consensus CACATGACAGTGGTTCAATGTGCAGGTAGACACCAGAAATCCGGGGA
. : . : . : . : . : . :
JMSF051I01+ TC--ATGCAGCCTTTATAAAGTTTTCACAAATTTGAGGCAAAGATAGTCCTGAAGAAAAA
JMSF051K07+ TCATATGCAGCCTTTATAAAGTTTTCACAAATTTGAGGCAAAGATAGTCCTGAAGAAAAA
____________________________________________________________
consensus TCATATGCAGCCTTTATAAAGTTTTCACAAATTTGAGGCAAAGATAGTCCTGAAGAAAAA
. : . : . : . : . : . :
JMSF051I01+ CGGGTCTGTAACTGATCAGATACCTGGCCGCGCAATTTCATAGTCAAAACGCTGCCTTTC
JMSF051K07+ CGGGTCTGTAACTGATCAGATACCTGGCCGCGCAATTTCATAGTCAAAACGCTGCCTTTC
JMFF016B06+ TCATAGTCAAAACGCTGCCTTTC
____________________________________________________________
consensus CGGGTCTGTAACTGATCAGATACCTGGCCGCGCAATTTCATAGTCAAAACGCTGCCTTTC
. : . : . : . : . : . :
JMSF051I01+ CGCACACGCTGCCACGGAAGCGCAAATAGCAATCTGAGCTTCACAACGAAACTCTTCCAA
JMSF051K07+ CGCACACGCTGCCACGGAAGCGCAAATAGCAATCTGAGCTTCACAACGAAACTCTTCCAA
JMFF016B06+ CGCACACGCTGCCACGGAAGCGCAAATAGCAATCTGAGCTTCACAACGAAACTCTTCCAA
____________________________________________________________
consensus CGCACACGCTGCCACGGAAGCGCAAATAGCAATCTGAGCTTCACAACGAAACTCTTCCAA
. : . : . : . : . : . :
JMSF003L16+ TTCTCCAGTCGGGTACTGGTCCTCGCCGGAGGAGCCT
JMSF051I01+ GCGCCGTACTCTTCAAACACAAATTCTCCAGTCGGGTACTGGTCCTCGCCGGAGGAGCCT
JMFF045P02+ CTTCAAACACGTATTCTCCAGTCGGGTGCTGGTCCTCGCAGGAGGAGCCT
JMSF051K07+ GCGCCGTACTCTTCAAACACAAATTCTCCAGTCGGGTACTGGTCCTCGCCGGAGGAGCCT
JMFF016B06+ GCGCCGTACTCTTCAAACACAAATTCTCCAGTCGGGTACTGGTCCTCGCCGGAGGAGCCT
____________________________________________________________
consensus GCGCCGTACTCTTCAAACACAAATTCTCCAGTCGGGTACTGGTCCTCGCCGGAGGAGCCT
. : . : . : . : . : . :
JMSF003L16+ CGAGCACTCCCGTCACCGTTAACCTCAGCAGTAGCATCATTCTTCATCTCCTCTTTGGCG
JMSF051I01+ CGAGCACTCCCGTCACCGTTAACCTCAGCAGTAGCATCATTCTTCATCTCCTCTTTGGCG
JMFF045P02+ GGAGCTCTCCTGTCAGCGTGAACCTCAGCAGTAGCATCATTCCTCATCTCGTAGGGGGCG
JMSF051K07+ CGAGCACTCCCGTCACCGTTAACCTCAGCAGTAGCATCATTCTTCATCTCCTCTTTGGCG
JMFF016B06+ CGAGCACTCCCGTCACCGTTAACCTCAGCAGTAGCATCATTCTTCATCTCCTCTTTGGCG
____________________________________________________________
consensus CGAGCACTCCCGTCACCGTTAACCTCAGCAGTAGCATCATTCTTCATCTCCTCTTTGGCG
. : . : . : . : . : . :
JMSF003L16+ GAGGAAAATA-CACCGTCGTTTTTGGTGTCGATGGCGGAA-ACGGAGAAGCAGCGGCGGC
JMSF051I01+ GAGGAAAATA-CACCGTCGTTTTTGGTGTCGATGGCGGAA-ACGGAGAAGCAGCGGCGGC
JMFF045P02+ GAGGAAAATAGCACAGTCGCATTAGGTGTCGAAGGCGGCATACGGAGAAGCAGCGGCGGC
JMSF051K07+ GAGGAAAATA-CACCGTCGTTTTTGGTGTCGATGGCGGAA-ACGGAGAAGCAGCGGCGGC
JMSF004I19+ GGAA-ACGGAGAAGCAGCGGCGGC
JMFF016B06+ GAGGAAAATA-CACCGTCGTTTTTGGTGTCGATGGCGGAA-ACGGAGAAGCAGCGGCGGC
____________________________________________________________
consensus GAGGAAAATA-CACCGTCGTTTTTGGTGTCGATGGCGGAA-ACGGAGAAGCAGCGGCGGC
. : . : . : . : . : . :
JMSF003L16+ TGTAGACAGGGGAAGGCTTGGGGAGTGGACTGTAAAGCGGAATCGGAGATAGGTGGACGG
JMSF051I01+ TGTAGACAGGGGAAGGCTTGGGGAGTGGACTGTAAAGCGGAATCGGAGATAGGTGGACGG
JMFF045P02+ AGTAGACAGGGGCAGGCTCGGGGAGTGGACTGTAAAGCGGAATCGATGATAGGTGGACGA
JMSF051K07+ TGTAGACAGGGGAAGGCTTGGGGAGTGGACTGTAAAGCGGAATCGGAGATAGGTGGACGG
JMSF004I19+ TGTAGACAGGGGAAGGCTTGGGGAGTGGACTGTAAAGCGGAATCGGAGATAGGTGGACGG
JMFF016B06+ TGTAGACAGGGGAAGGCTTGGGGAGTGGACTGTAAAGCGGAATCGGAGATAGGTGGACGG
____________________________________________________________
consensus TGTAGACAGGGGAAGGCTTGGGGAGTGGACTGTAAAGCGGAATCGGAGATAGGTGGACGG
. : . : . : . : . : . :
JMSF003L16+ CGGAGGGGAGTCGGGAGAGAGAGAAGGTGAAGGAGCGGAGGTGGAGTGACGTCAGACGAG
JMSF051I01+ CGGAGGGGAGTCGGGAGAGAGAGAAGGTGAAGGAGCGGAGGTGGAGTGACGTCAGACGAG
JMFF045P02+ CGGAGGCGAGTCCGCAGAGAGAGAAGGAGACGGACCGGAGGCGGAGAGACGTCAGACGAG
JMSF051K07+ CGGAGGGGAGTCGGGAGAGAGAGAAGGTGAAGGAGCGGAGGTGGAGTGACGTCAGACGAG
JMSF004I19+ CGGAGGGGAGTCGGGAGAGAGAGAAGGTGAAGGAGCGGAGGTGGAGTGACGTCAGACGAG
JMFF016B06+ CGGAGGGGAGTCGGGAGAGAGAGAAGGTGAAGGAGCGGAGGTGGAGTGACGTCAGACGAG
____________________________________________________________
consensus CGGAGGGGAGTCGGGAGAGAGAGAAGGTGAAGGAGCGGAGGTGGAGTGACGTCAGACGAG
. : . : . : . : . : . :
JMSF003L16+ AGGTGGGAAGAAAAAGCAGCTTCGACATCTTCTTATTCTTCTTCTTCTCCTCCTCTCTCG
JMSF051I01+ AGGTGGGAAGAAAAAGCAGCTTCGACATCTTCTTATTCTTCTTCTTCTCCTCCTCTCTCG
JMFF045P02+ AGGTGGGAAGAACAACCAGATTCGACATATTCCTAGTCTTATTGCTGTCCTCCTGTATCG
JMSF051K07+ AGGTGGGAAGAAAAAGCAGCTTCGACATCTTCTTATTCTTCTTCTTCTCCTCCTCTCTCG
JMSF004I19+ AGGTGGGAAGAAAAAGCAGCTTCGACATCTTCTTATTCTTCTTCTTCTCCTCCTCTCTCG
JMFF016B06+ AGGTGGGAAGAAAAAGCAGCTTCGACATCTTCTTATTCTTCTTCTTCTCCTCCTCTCTCG
____________________________________________________________
consensus AGGTGGGAAGAAAAAGCAGCTTCGACATCTTCTTATTCTTCTTCTTCTCCTCCTCTCTCG
. : . : . : . : . : . :
JMSF003L16+ ATTGTGTTC
JMSF051I01+ ATTGTGTTCAAATGGAAGTGAAGAGTGGAATTAGGAGCTGATGAAACAAAGGCTCGCTGA
JMFF045P02+ AAGGTGTTCAAATGGAAGGGGAGAGTGGGATTAGGAGTTGATGAAGCAAAGGCTGGCTGA
JMSF051K07+ ATTGTGTTCAAATGGAAGTGAAGAGTGGAATTAGGAGCTGATGAAACAAAGGCTCGCTGA
JMSF004I19+ ATTGTGTTCAAATGGAAGTGAAGAGTGGAATTAGGAGCTGATGAAACAAAGGCTCGCTGA
JMFF016B06+ ATTGTGTTCAAATGGAAGTGAAGAGTGGAATTAGGAGCTGATGAAACAAAGGCTCGCTGA
____________________________________________________________
consensus ATTGTGTTCAAATGGAAGTGAAGAGTGGAATTAGGAGCTGATGAAACAAAGGCTCGCTGA
. : . : . : . : . : . :
JMSF051I01+ GCACCACGTCGAGCTGATCAGCCACCAGTCC
JMFF045P02+ GCACCACGTCGAGCTGATCAGCCACCAGTCCACGGCTCA
JMSF051K07+ GCACCACGTCGAGCTGATCAGCCACCAGTCCACGGCTCATCCACATTACGCTC
JMSF004I19+ GCACCACGTCGAGCTGATCAGCCACCAGTCCACGGCTCATCCACATTACGCTC
JMFF016B06+ GCACCACGTCGAGCTGATCAGCCACCAGTCCACGGCTCATCCACATTACGCTCAGTAGAT
____________________________________________________________
consensus GCACCACGTCGAGCTGATCAGCCACCAGTCCACGGCTCATCCACATTACGCTCAGTAGAT