Contig 010189:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015B01Sequence527010189 (2)gb|ADV02777.1|1e-83C3HC4-type zinc RING finger family protein [Ipomoea batatas]598010189 (2)gb|ADV02777.1|6e-34C3HC4-type zinc RING finger family protein [Ipomoea batatas]

Alignment

This contig is upended


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rJMFF015B01-                                                          CAGTTTAGGTAT
                      ____________________________________________________________
consensus                                                             CAGTTTAGGTAT
 
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rJMFF015B01-          ATGTACAAACACGTGAGCTACGCAAGTAACACTAAACATCAAAGCTCAAACATCCTATAT
                      ____________________________________________________________
consensus             ATGTACAAACACGTGAGCTACGCAAGTAACACTAAACATCAAAGCTCAAACATCCTATAT
 
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rJMFF015B01-          TTTCTGATTCTTGAAATTCAACTGCAAATCCAAAATTGGAACACAAGCAATCATTGAATG
                      ____________________________________________________________
consensus             TTTCTGATTCTTGAAATTCAACTGCAAATCCAAAATTGGAACACAAGCAATCATTGAATG
 
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rJMFF015B01-          CGATATGCTAAAATGATAGGCTTGGGAGAAGGCCTCGTGTGTACGTGTTCCTCTTCTTTC
                      ____________________________________________________________
consensus             CGATATGCTAAAATGATAGGCTTGGGAGAAGGCCTCGTGTGTACGTGTTCCTCTTCTTTC
 
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rJMFF015B01-          TTCTGAATTTTAGTTGATGATTCTTTCTTTGTTTTCCCTTGTCTCTGCTTCTACCTCAAG
                      ____________________________________________________________
consensus             TTCTGAATTTTAGTTGATGATTCTTTCTTTGTTTTCCCTTGTCTCTGCTTCTACCTCAAG
 
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rJMFF015B01-          AAGAGTATTTGATGTCACAACAGAGTGAAACTCAGCACTCAGCGGGAGCCTCCATGACGG
                      ____________________________________________________________
consensus             AAGAGTATTTGATGTCACAACAGAGTGAAACTCAGCACTCAGCGGGAGCCTCCATGACGG
 
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rJMFF015B01-          GAAACAAGTAATGAACGATAAATTGCAGCAATATACAGGAAGAACATGAACACGAAAATG
                      ____________________________________________________________
consensus             GAAACAAGTAATGAACGATAAATTGCAGCAATATACAGGAAGAACATGAACACGAAAATG
 
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rJMFF015B01-          AGATCATCCAGGAAGCCAATTATACCCAGAACTCCTTCTGGAATAATGTCAATAGGGCTG
JMFF015B01+                        AGCCAATTATACCCAGAACTCNTTCTGGAATAATGTCAATAGGGCTG
                      ____________________________________________________________
consensus             AGATCATCCAGGAAGCCAATTATACCCAGAACTCCTTCTGGAATAATGTCAATAGGGCTG
 
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rJMFF015B01-          AGGACATAGAGTACGCTTAAAAAAGTAGCCAGATATACGCGCGTCCGGATAACAAATGGA
JMFF015B01+           AGGACATAGAGTACGCTTAAAAAAGTAGCCAGATATACGCGCGTCCGGATAACAAATGGA
                      ____________________________________________________________
consensus             AGGACATAGAGTACGCTTAAAAAAGTAGCCAGATATACGCGCGTCCGGATAACAAATGGA
 
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rJMFF015B01-          AGAGATCTTTGAGGGTCTGTAATCTCTCGCAACAATCTCCTGAGGAGAAAAGGAAGATCT
JMFF015B01+           AGAGATCTTTGAGGGTCTGTAATCTCTCGCAACAATCTCCTGAGGAGAAAAGGAAGATCT
                      ____________________________________________________________
consensus             AGAGATCTTTGAGGGTCTGTAATCTCTCGCAACAATCTCCTGAGGAGAAAAGGAAGATCT
 
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rJMFF015B01-          TGCAATTTCTGAAGAAGTCCATTGCTCTGCTGACCATATAAACGGT              
JMFF015B01+           TGCAATTTNTGAAGAAGTCCATTGCTCTGCTGACCATATAAACGGTTATAAGTTTCAATT
                      ____________________________________________________________
consensus             TGCAATTTCTGAAGAAGTCCATTGCTCTGCTGACCATATAAACGGTTATAAGTTTCAATT
 
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JMFF015B01+           CTTGTAAAAACATCAGACACTTCAGGACTNTGGCACTGCCTNGATGAAGCTTCAGAAGGA
                      ____________________________________________________________
consensus             CTTGTAAAAACATCAGACACTTCAGGACTNTGGCACTGCCTNGATGAAGCTTCAGAAGGA
 
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JMFF015B01+           ACCAACAAAGTAATCTGGCGNCGACACAATGGACATTTACACGGCTGAAGGGNTGATCCA
                      ____________________________________________________________
consensus             ACCAACAAAGTAATCTGGCGNCGACACAATGGACATTTACACGGCTGAAGGGNTGATCCA
 
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JMFF015B01+           TGATTCCAAACTTGTAGAATACAATTTCCGCAAAACCAGTGGGAGCAATTAGCCTGGCAA
                      ____________________________________________________________
consensus             TGATTCCAAACTTGTAGAATACAATTTCCGCAAAACCAGTGGGAGCAATTAGCCTGGCAA
 
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JMFF015B01+           GGAATGTGGAAGTTGCCATGGCATACTGAACAAAAATCGTTCTCCGGCGGCAAGTCCATT
                      ____________________________________________________________
consensus             GGAATGTGGAAGTTGCCATGGCATACTGAACAAAAATCGTTCTCCGGCGGCAAGTCCATT
 
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JMFF015B01+           GCAATCGGAGGATCCTCTGTCTCTCTCTCTCTCTCTCGCTCCCTCTCAGATTGATTAGTT
                      ____________________________________________________________
consensus             GCAATCGGAGGATCCTCTGTCTCTCTCTCTCTCTCTCGCTCCCTCTCAGATTGATTAGTT