Contig 010187:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014D22Sequence538010187 (2)ref|XP_006348714.1|3e-62PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Solanum tubero837010187 (2)ref|XP_009619006.1|4e-77PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Nicotiana tomentosi

Alignment

This contig is upended


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rJMFF014D22-                                            TTTTTATAATTGTTTAGATTATCTGC
                      ____________________________________________________________
consensus                                               TTTTTATAATTGTTTAGATTATCTGC
 
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rJMFF014D22-          ACACTAGCAATGACTGTGAATTGTAAGCTAACGTATTACATATCATTTTCACACCCCTCT
                      ____________________________________________________________
consensus             ACACTAGCAATGACTGTGAATTGTAAGCTAACGTATTACATATCATTTTCACACCCCTCT
 
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rJMFF014D22-          ATATTGCAAGGATTGCAAATCTGAGCAGTACTTATTACAGAGTATAATATATTTGAAGTG
                      ____________________________________________________________
consensus             ATATTGCAAGGATTGCAAATCTGAGCAGTACTTATTACAGAGTATAATATATTTGAAGTG
 
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rJMFF014D22-          CCAAAAAAAAACCCTCAATTTTAGGCAAAAACAGTAGTATGGTAATAGTGAGAACAAGTT
                      ____________________________________________________________
consensus             CCAAAAAAAAACCCTCAATTTTAGGCAAAAACAGTAGTATGGTAATAGTGAGAACAAGTT
 
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rJMFF014D22-          TCAATATCAAACACCGGTCATCAAAATGATGGTTGTCAATTGAGCTTAAAGACAACAATC
                      ____________________________________________________________
consensus             TCAATATCAAACACCGGTCATCAAAATGATGGTTGTCAATTGAGCTTAAAGACAACAATC
 
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rJMFF014D22-          TGGTTATGAGTCTTAGTAAGCTCTTACACAGTTACACTTGACTGCGTGCTGATTATCGTC
                      ____________________________________________________________
consensus             TGGTTATGAGTCTTAGTAAGCTCTTACACAGTTACACTTGACTGCGTGCTGATTATCGTC
 
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rJMFF014D22-          ATATAAGAGATGACTTGCCCCTGTGTATTAGTTTGTGTACTTCTTGGAGTTCAGCCTTCA
                      ____________________________________________________________
consensus             ATATAAGAGATGACTTGCCCCTGTGTATTAGTTTGTGTACTTCTTGGAGTTCAGCCTTCA
 
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rJMFF014D22-          AGCATGGTTTTAGCAGCATCAACTAATACAGGCCGAATATCATCTGAAGCTCGGCCAAGC
                      ____________________________________________________________
consensus             AGCATGGTTTTAGCAGCATCAACTAATACAGGCCGAATATCATCTGAAGCTCGGCCAAGC
 
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rJMFF014D22-          ACAGTGTAGCCTTCCTTGTCCTCGGCATCAACACTTGCTCCATGTCTTATGAGAAGCAGA
                      ____________________________________________________________
consensus             ACAGTGTAGCCTTCCTTGTCCTCGGCATCAACACTTGCTCCATGTCTTATGAGAAGCAGA
 
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rJMFF014D22-          GCCACATCTCTATTGTGGCATATGACTGCAGTCATGAGAGGAGTCTCGCCTGCTCTATCC
                      ____________________________________________________________
consensus             GCCACATCTCTATTGTGGCATATGACTGCAGTCATGAGAGGAGTCTCGCCTGCTCTATCC
 
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rJMFF014D22-          AATTCATCTACTTCTGCACCCTCCTCAATTAANAGCTCGCACAAATCANACTTCCCTGTG
                      ____________________________________________________________
consensus             AATTCATCTACTTCTGCACCCTCCTCAATTAANAGCTCGCACAAATCANACTTCCCTGTG
 
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rJMFF014D22-          CTAGCTGCCCGGTGCAATGGGGTGCATCCAACCTTGTCTTTTGCATTGATCTTTGCACCA
JMFF014D22+            TAGCTGCCCGGTGCAATGGGGTGCATCCAACCTTGTCTTTTGCATTGATCTTTGCACCA
                      ____________________________________________________________
consensus             CTAGCTGCCCGGTGCAATGGGGTGCATCCAACCTTGTCTTTTGCATTGATCTTTGCACCA
 
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rJMFF014D22-          TGTGAAATCAAAATTTCAGCTACTCTGAAGTGACCTTTGCTTGCAGCATAGTGCAGAGCA
JMFF014D22+           TGTGAAATCAGAATTTCAGCTACTCTGAAGTGACCTTTGCTTGCAGCATAGTGCAGAGCA
                      ____________________________________________________________
consensus             TGTGAAATCAGAATTTCAGCTACTCTGAAGTGACCTTTGCTTGCAGCATAGTGCAGAGCA
 
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rJMFF014D22-          GTTCGACCGCCATCATTTTTAGCATTAACATTAGCTTCTCTGCTGAGCAAAATCTNCCAC
JMFF014D22+           GTTCGACCGCCATCATTTTTAGCATTAACATTAGCTTCTCTGCTGAGCAAAATCT-CCAC
                      ____________________________________________________________
consensus             GTTCGACCGCCATCATTTTTAGCATTAACATTAGCTTCTCTGCTGAGCAAAATCTNCCAC
 
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rJMFF014D22-          AATTTCTATATTCCCACTACTTGCTGCA                                
JMFF014D22+           AATTTCTATATTCCCACTACTTGCTGCAGAATGCAGTGGCACCCAACCTTCTTCATCTCC
                      ____________________________________________________________
consensus             AATTTCTATATTCCCACTACTTGCTGCAGAATGCAGTGGCACCCAACCTTCTTCATCTCC
 
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JMFF014D22+           ACTGTTTATACCGCTAATTGAAGAGTCAGCAGCAGCCAATCTTTACCACCTCGGTGTGAG
                      ____________________________________________________________
consensus             ACTGTTTATACCGCTAATTGAAGAGTCAGCAGCAGCCAATCTTTACCACCTCGGTGTGAG
 
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JMFF014D22+           CAGAAGAGACAGCGACGTGAAGAAGAGAGCGGGCATCCTCGTTGCGGAGAGCGAGGGCTT
                      ____________________________________________________________
consensus             CAGAAGAGACAGCGACGTGAAGAAGAGAGCGGGCATCCTCGTTGCGGAGAGCGAGGGCTT
 
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JMFF014D22+           TGAGAAGCTGGTCATCAGAGAGGGATTTGAAGAGCTCAGAATTACCCGATTCAGCGGCCT
                      ____________________________________________________________
consensus             TGAGAAGCTGGTCATCAGAGAGGGATTTGAAGAGCTCAGAATTACCCGATTCAGCGGCCT
 
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JMFF014D22+           TGAAGAGGTCTTTGTCTTTTATTTGAGTCGGTTTCGTTGAATCTATTTCCATAGCCATGG
                      ____________________________________________________________
consensus             TGAAGAGGTCTTTGTCTTTTATTTGAGTCGGTTTCGTTGAATCTATTTCCATAGCCATGG
 
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JMFF014D22+           ATGCCGGGTACTGAGGGCTTTGTTACAGGGTTTTTGCTGGGGAAGTAGAGTGTCGAATCC
                      ____________________________________________________________
consensus             ATGCCGGGTACTGAGGGCTTTGTTACAGGGTTTTTGCTGGGGAAGTAGAGTGTCGAATCC