Contig 010185:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013B20-                             TTGTGTAGCAAAAGATAAAAACAAAAACAAGTTTACATAGG
rJMSF017O13-                                                                    GG
                      ____________________________________________________________
consensus                                TTGTGTAGCAAAAGATAAAAACAAAAACAAGTTTACATAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013B20-          GAATTGAAAAGCAGAGAACAGTGAGCGCCAGGAACACACTGTACAATACTAAATTAAATT
rJMSF017O13-          GAATTGAAAAGCAGAGAACAGTGAGCGCCAGGAACACACTGTACAATACTAAATTAAATT
                      ____________________________________________________________
consensus             GAATTGAAAAGCAGAGAACAGTGAGCGCCAGGAACACACTGTACAATACTAAATTAAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013B20-          AAAGGCTCCCCCGTCTTCTCTAGTCAATTCCTCCTTTTGGCCTCATATACAAAATCTACA
rJMSF017O13-          AAAGGCTCCCCCGTCTTCTCTAGTCAATTCCTCCTTTTGGCCTCATATACAAAATCTACA
                      ____________________________________________________________
consensus             AAAGGCTCCCCCGTCTTCTCTAGTCAATTCCTCCTTTTGGCCTCATATACAAAATCTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013B20-          CGAACAAAACAACGCAGCAGATTCAGATTTCTTCTGATCAATGATCGATTGATTGAATTA
rJMSF017O13-          CGAACAAAACAACGCAGCAGATTCAGATTTCTTCTGATCAATGATCGATTGATTGAATTA
                      ____________________________________________________________
consensus             CGAACAAAACAACGCAGCAGATTCAGATTTCTTCTGATCAATGATCGATTGATTGAATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013B20-          GTCCGGCGGATCGGATACACAATTTGTAGATGATCTGATCAGTATGAGTATTCCATCCGC
rJMSF017O13-          GTCCGGCGGATCGGATACACAATTTGTAGATGATCTGATCAGTATGAGTATTCCATCCGC
                      ____________________________________________________________
consensus             GTCCGGCGGATCGGATACACAATTTGTAGATGATCTGATCAGTATGAGTATTCCATCCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013B20-          TGCACCCGATCTTTGAGCACTCCGGCGTACAGCGCCACCCGATTTTCCGGCATTCCCTTG
rJMSF017O13-          TGCACCCGATCTTTGAGCACTCCGGCGTACAGCGCCACCCGATTTTCCGGCATTCCCTTG
                      ____________________________________________________________
consensus             TGCACCCGATCTTTGAGCACTCCGGCGTACAGCGCCACCCGATTTTCCGGCATTCCCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013B20-          TTTCCGAGACAACGCCGCCGCTGATTATTCCCCAATTCGAATTGTCTCCTGTACTCCTCG
rJMSF017O13-          TTTCCGAGACAACGCCGCCGCTGATTATTCCCCAATTCGAATTGTCTCCTGTACTCCTCG
                      ____________________________________________________________
consensus             TTTCCGAGACAACGCCGCCGCTGATTATTCCCCAATTCGAATTGTCTCCTGTACTCCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013B20-          CCATTCCCGATTGTGTCCTTCACGTCCTCTGCAAACTGAACTCTCTTCTTCTTCTTCGAT
rJMSF017O13-          CCATTCCCGATTGTGTCCTTCACGTCCTCTGCAAACTGAACTCTCTTCTTCTTCTTCGAT
JMFF013B20+                                                           TTCTTCTTCGAT
                      ____________________________________________________________
consensus             CCATTCCCGATTGTGTCCTTCACGTCCTCTGCAAACTGAACTCTCTTCTTCTTCTTCGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013B20-          TTCGATTTCGATTTCTTCTCGCTCTCCTTGTTCCTATCGCCTCCTATTTAATTTCACACC
rJMSF017O13-          TTCGATTTCGATTTCTTCTCGCTCTCCTTGTTCCTATCGCCTCCTATTTAATTTCACACC
JMFF013B20+           TTCGATTTCGATTTCTTCTCGCTCTCCTTGTTCCTATCGCCTCCTATTTAATTTCACACC
                      ____________________________________________________________
consensus             TTCGATTTCGATTTCTTCTCGCTCTCCTTGTTCCTATCGCCTCCTATTTAATTTCACACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013B20-          CATCACAATACTTCAATTATATGCAAGCAAACCCTAACATTCGGAGAAGATCAGATCAGA
rJMSF017O13-          CATCACAATACTTCAATTATATGCAAGCAAACCCTAACATTCGGAGAAGATCAGATCAGA
JMSF017O13+               ACAATACTTCAATTATATGCAAGCAAACCCTAACATTCGGAGAAGATCAGATCAGA
JMFF013B20+           CATCACAATACTTCAATTATATGCAAGCAAACCCTAACATTCGGAGAAGATCAGATCAGA
                      ____________________________________________________________
consensus             CATCACAATACTTCAATTATATGCAAGCAAACCCTAACATTCGGAGAAGATCAGATCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF013B20-          GAAACAAGTACCTGAAGAAGACGTTAAACAAGAC                          
rJMSF017O13-          GAAACAAGTACCTGAAGAAGACGTTAAACAAGACCTGAGAATCCGGTGTTTCTCTGCCAA
JMSF017O13+           GAAACAAGTACCTGAAGAAGACGTTAAACAAGACCTGAGAATCCGGTGTTTCTCTGCCAA
JMFF013B20+           GAAACAAGTACCTGAAGAAGACGTTAAACAAGACCTGAGAATCCGGTGTTTCTCTGCCAA
                      ____________________________________________________________
consensus             GAAACAAGTACCTGAAGAAGACGTTAAACAAGACCTGAGAATCCGGTGTTTCTCTGCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017O13-          GGATTCTTGATTCTGGGGAAAGTACTTGTCCCGGAGAAGATCAAGGATAATTATGGTTCC
JMSF017O13+           GGATTCTTGATTCTGGGGAAAGTACTTGTCCCGGAGAAGATCAAGGATAATTATGGTTCC
JMFF013B20+           GGATTCTTGATTCTGGGGAAAGTACTTGTCCCGGAGAAGATCAAGGATAATTATGGTTCC
                      ____________________________________________________________
consensus             GGATTCTTGATTCTGGGGAAAGTACTTGTCCCGGAGAAGATCAAGGATAATTATGGTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017O13-          CGCAGAGACGGCCATGGCTGTAGCCAAAACCAAACCTTGAGAGCTCAACATTCT      
JMSF017O13+           CGCAGAGACGGCCATGGCTGTAGCCAAAACCAAACCTTGAGAGCTCAACATTCTTAAAAT
JMFF013B20+           CGCAGAGACGGCCATGGCTGTAGCCAAAACCAAACCTTGAGAGCTCAACATTCTTAAAAT
                      ____________________________________________________________
consensus             CGCAGAGACGGCCATGGCTGTAGCCAAAACCAAACCTTGAGAGCTCAACATTCTTAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017O13+           TCTTAATTGTGTACAGGGAAGGGAAGCTGTAGTCTGTAGACTTGAGTTTGAAGTTTGAAG
JMFF013B20+           TCTTAATTGTGTACAGGGAAGGGAAGCTGTAGTCTGTAGACTTGAGTTTGAAGTTTGAAG
                      ____________________________________________________________
consensus             TCTTAATTGTGTACAGGGAAGGGAAGCTGTAGTCTGTAGACTTGAGTTTGAAGTTTGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017O13+           AAGAAATCTATGCTACCTAAAATAGCGATTAGTGGGTGGTTGGGTGATAAACAAATACTA
JMFF013B20+           AAGAAATCTATGCTACCTAAAATAGCGATTAGTGGGTGGTTGGGTGATAAACAAATACTA
                      ____________________________________________________________
consensus             AAGAAATCTATGCTACCTAAAATAGCGATTAGTGGGTGGTTGGGTGATAAACAAATACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017O13+           AAATACTCGTATGATGAGTGAATCTGGAAATTTCTGGGGTTCTGTTTCGGTTTTCTTTTG
JMFF013B20+           AAATACTCGTATGATGAGTGAATCTGGAAATTTCTGGGGTTCTGTTTCGGTTTTCTTTTG
                      ____________________________________________________________
consensus             AAATACTCGTATGATGAGTGAATCTGGAAATTTCTGGGGTTCTGTTTCGGTTTTCTTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017O13+           CTCTGTGACTTTCTGGAATGGAAGTGTGTGTGTTATTGCGCTGCCAAGAAAGACAC    
JMFF013B20+           CTCTGTGACTTTCTGGAATGGAAGTGTGTGTGTTATTGCGCTGCCAAGAAAGACACTCAC
                      ____________________________________________________________
consensus             CTCTGTGACTTTCTGGAATGGAAGTGTGTGTGTTATTGCGCTGCCAAGAAAGACACTCAC