| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012P19 | Sequence | 495 | 010184 (4) | ref|XP_008378453.1| | 3e-14 | PREDICTED: synaptotagmin-5 [Malus domestica] | 745 | 001250 (6) | ref|XP_008383203.1| | 7e-111 | PREDICTED: ALA-interacting subunit 3-like [Malus domestica] |
| JMFF019B22 | Sequence | 529 | 010184 (4) | ref|XP_007211498.1| | 2e-32 | hypothetical protein PRUPE_ppa007864mg [Prunus persica] gb|EMJ12697.1| hypotheti | 686 | 001250 (6) | ref|XP_008383203.1| | 2e-94 | PREDICTED: ALA-interacting subunit 3-like [Malus domestica] |
| JMFF020B14 | Sequence | 629 | 010184 (4) | ref|XP_010260740.1| | 1e-50 | PREDICTED: ALA-interacting subunit 3 [Nelumbo nucifera] | 444 | 001250 (6) | ref|XP_008383203.1| | 6e-83 | PREDICTED: ALA-interacting subunit 3-like [Malus domestica] |
| JMFF051E16 | Sequence | 616 | 010184 (4) | ref|XP_010260740.1| | 7e-44 | PREDICTED: ALA-interacting subunit 3 [Nelumbo nucifera] | 525 | 001250 (6) | ref|XP_009340121.1| | 3e-59 | PREDICTED: ALA-interacting subunit 3-like [Pyrus x bretschneideri] |
This contig is upended
. : . : . : . : . : . :
JMFF020B14+ TTGGTAATAC
____________________________________________________________
consensus TTGGTAATAC
. : . : . : . : . : . :
JMFF051E16+ ATAAATAGGCTGCTTCATATGCTTCGGTACTCTCAGGATTCGAGGGCAGATTTTACTT
JMFF020B14+ ACATAAATAGGCTGCTTCATATGCTTCGGTACTCTCAGGATTCGAGGGCAGATTTTACTT
____________________________________________________________
consensus ACATAAATAGGCTGCTTCATATGCTTCGGTACTCTCAGGATTCGAGGGCAGATTTTACTT
. : . : . : . : . : . :
JMFF051E16+ AGATTGCTTNGTATAAACTGAACTTCATTTCCTGAATAATTGCTGGTNATGCAGTCAGCC
JMFF019B22+ TCCTGAATAATTGCTTGGTATGCAGTCAGCC
JMFF020B14+ AGATTGCTTTGTATAAACTGAACTTCATTTCCTGAATAATTGCTTGGTATGCAGTCAGCC
____________________________________________________________
consensus AGATTGCTTTGTATAAACTGAACTTCATTTCCTGAATAATTGCTTGGTATGCAGTCAGCC
. : . : . : . : . : . :
JMFF051E16+ TCATAACGATCAACAATCTCAACAAGATCCCGAGAAGCAAGCAAGGAAACAACTCCAATG
JMFF019B22+ TCATAACGATCAACAATCTCAACAAGATCCCGAGAAGCAAGCAAGGAAACAACTCCAATG
JMFF020B14+ TCATAACGATCAACAATCTCAACAACATCCCGAGAAGCAAGCAAGGAAACAACTCCAATG
____________________________________________________________
consensus TCATAACGATCAACAATCTCAACAAGATCCCGAGAAGCAAGCAAGGAAACAACTCCAATG
. : . : . : . : . : . :
JMFF051E16+ GGAATGAAGACAATACTGACTAGCAGAAAAGCTGAGATAACCCACTTTGGTGTTAATATT
JMFF019B22+ GGAATGAAGACAATACTGACTAGCAGAAAAGCTGAGATAACCCACTTTGGTGTTAATATT
JMFF020B14+ GGAATGAAGACAATACTGACTAGCAGAAAAGCTGAGATAACCCACTTTGGTGTTAATATT
JMFF012P19+ TTTGGTGTTAATATT
____________________________________________________________
consensus GGAATGAAGACAATACTGACTAGCAGAAAAGCTGAGATAACCCACTTTGGTGTTAATATT
. : . : . : . : . : . :
JMFF051E16+ GGTTTGCAGGCAGGAAGTTCCTGTTGCGTAAACCTTGAATACTTGGGTCGCCTGGAAATT
JMFF019B22+ GGTTTGCAGGCAGGAAGTTCCTGTTGCGTAAACCTTGAATACTTGGGTCGCCTGGAAATT
JMFF020B14+ GGTTTGCAGGCAGGAAGTTCCTGTTGCGTAAACCTTGAATACTTGGGTCGCCTGGAAATT
JMFF012P19+ GGTTTGCAGGCAGGAAGTTCCTGTTGCGTAAACCTTGAATACTTGGGTCGCCTGGAAATT
____________________________________________________________
consensus GGTTTGCAGGCAGGAAGTTCCTGTTGCGTAAACCTTGAATACTTGGGTCGCCTGGAAATT
. : . : . : . : . : . :
JMFF051E16+ CTTCTGGTTGCAGAATTATCGGCGGATCCGGGGGCGCCGGAGCTGGATGAGGGAGCGTTG
JMFF019B22+ CTTCTGGTTGCAGAATTATCGGCGGATCCGGGGGCGCCGGAGCTGGATGAGGGAGCGTTG
JMFF020B14+ CTTCTGGTTGCAGAATTATCGGCGGATCCGGGGGCGCCGGAGCTGGATGAGGGAGCGTTG
JMFF012P19+ CTTCTGGTTGCAGAATTATCGGCGGATCCGGGGGCGCCGGAGCTGGATGAGGGAGCGTTG
____________________________________________________________
consensus CTTCTGGTTGCAGAATTATCGGCGGATCCGGGGGCGCCGGAGCTGGATGAGGGAGCGTTG
. : . : . : . : . : . :
JMFF051E16+ GAGCTCATCACTCGAATTTCTTCGTCTCAGAAATCTAAACTGCAAATATCAGGTAGATGT
JMFF019B22+ GAGCTCATCACTCGAATTTCTTCGTCTCAGAAATCTAAACTGCAAATATCAGGTAGATGT
JMFF020B14+ GAGCTCATCACTCGAATTTCTTCGTCTCAGAAATCTAAACTGCAAATATCAGGTAGATGT
JMFF012P19+ GAGCTCATCACTCGAATTTCTTCGTCTCAGAAATCTAAACTGCAAATATCAGGTAGATGT
____________________________________________________________
consensus GAGCTCATCACTCGAATTTCTTCGTCTCAGAAATCTAAACTGCAAATATCAGGTAGATGT
. : . : . : . : . : . :
JMFF051E16+ TTTTTTGGTTCGATCAAATTGTGGAAGAATTAG
JMFF019B22+ TTTTTTGGTTCGATCAAATTGTGGAAGAATTAG
JMFF020B14+ TTTTTTGGTTCGATCAAATTGTGGAAGAATTAG
JMFF012P19+ TTTTTTGGTTCGATCAAATTGTGGAAGAATTAGTTTTACATCAACCGCTTTGGCCCTCCG
____________________________________________________________
consensus TTTTTTGGTTCGATCAAATTGTGGAAGAATTAGTTTTACATCAACCGCTTTGGCCCTCCG
. : . : . : . : . : . :
JMFF012P19+ CTTGCTGCTCCGATATCTCATCATATGTCGCCAGCCCGCCATCAAAGCAATTCCAAACAG
____________________________________________________________
consensus CTTGCTGCTCCGATATCTCATCATATGTCGCCAGCCCGCCATCAAAGCAATTCCAAACAG
. : . : . : . : . : . :
JMFF012P19+ AATCCCCATCAGCATCCCCGAAATCAGCCCCATCTTCGATGATCCAGCAAAAAATTTCCT
____________________________________________________________
consensus AATCCCCATCAGCATCCCCGAAATCAGCCCCATCTTCGATGATCCAGCAAAAAATTTCCT
. : . : . : . : . : . :
JMFF012P19+ TATTCCTGCTCCGAAAAAAAGAATTCCTGCAACTGCCTTCAACTGACCCAGTAGCTCCTT
____________________________________________________________
consensus TATTCCTGCTCCGAAAAAAAGAATTCCTGCAACTGCCTTCAACTGACCCAGTAGCTCCTT
. : . : . : . : . : . :
JMFF012P19+ TCTCTCACACCAGGAAGATATAGCTTTCTCTCTCTGTAATTATAGATTGGGTTGCTTAGC
____________________________________________________________
consensus TCTCTCACACCAGGAAGATATAGCTTTCTCTCTCTGTAATTATAGATTGGGTTGCTTAGC