Contig 010178:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011C15Sequence516010178 (2)ref|XP_009783401.1|4e-08PREDICTED: probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Nic716013647 (2)ref|XP_009804376.1|3e-88PREDICTED: probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Nic
JMFS106H03Sequence623010178 (2)ref|XP_009783401.1|4e-30PREDICTED: probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Nic

Alignment

This contig is upended


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JMFS106H03+                     CCGTTAATGCAGTCAGGGACGGCGCCGTCGACGGGGAGGTTGTTCCGTAC
                      ____________________________________________________________
consensus                       CCGTTAATGCAGTCAGGGACGGCGCCGTCGACGGGGAGGTTGTTCCGTAC
 
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JMFS106H03+           CGCCTGTTCCGGAACGGGAGCGAAATTCCCGGCGATTTGTACGCCAGGGTCCCAAGTTTT
                      ____________________________________________________________
consensus             CGCCTGTTCCGGAACGGGAGCGAAATTCCCGGCGATTTGTACGCCAGGGTCCCAAGTTTT
 
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JMFS106H03+           CGGGAGCGGTCGTTGAAGCTCGCGTGAGACCAACGCGCCCTCCGCCACGTCCAGCGCCGC
JMFF011C15+                                   TGAGACCAACGCGCCCTCCGCCACGTCCAGCGCCGC
                      ____________________________________________________________
consensus             CGGGAGCGGTCGTTGAAGCTCGCGTGAGACCAACGCGCCCTCCGCCACGTCCAGCGCCGC
 
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JMFS106H03+           GGCCACAGCTCGCTGGAGGAGGTTCCATTTGGGCTGCGACGGCGCCGGAGATTCCCCGTC
JMFF011C15+           GGCCACAGCTCGCTGGAGGAGGTTCCATTTGGGCTGCGACGGCGCCGGAGATTCCCCGTC
                      ____________________________________________________________
consensus             GGCCACAGCTCGCTGGAGGAGGTTCCATTTGGGCTGCGACGGCGCCGGAGATTCCCCGTC
 
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JMFS106H03+           CGGCAATTGCTGCTCAGGTAAAGTAACCACGGAAGAAGAGTGCACCGCCGCTTCGCAGTG
JMFF011C15+           CGGCAATTGCTGCTCAGGTAAAGTAACCACGGAAGAAGAGTGCACCGCCGCTTCGCAGTG
                      ____________________________________________________________
consensus             CGGCAATTGCTGCTCAGGTAAAGTAACCACGGAAGAAGAGTGCACCGCCGCTTCGCAGTG
 
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JMFS106H03+           AATCTTGGCCCTCCTAGTGGGCTTTTTCATGGAGATTGACTTAGAGGGAAGGCCCAAATC
JMFF011C15+           AATCTTGGCCCTCCTAGTGGGCTTTTTCATGGAGATTGACTTAGAGGGAAGGCCCAAATC
                      ____________________________________________________________
consensus             AATCTTGGCCCTCCTAGTGGGCTTTTTCATGGAGATTGACTTAGAGGGAAGGCCCAAATC
 
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JMFS106H03+           AACCGTTGAAGAAGAAGAAGAAGAAGAAAACCGTTGAATAGCCCATGGATTGAAATTGGA
JMFF011C15+           AACCGTTGAAGAAGAAGAAGAAGAAGAAAACCGTTGAATAGCCCATGGATTGAAATTGGA
                      ____________________________________________________________
consensus             AACCGTTGAAGAAGAAGAAGAAGAAGAAAACCGTTGAATAGCCCATGGATTGAAATTGGA
 
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JMFS106H03+           AGGTGTAGCATATGCCATTTTGATTATCAAGTCAATCGATATATATGACTCAATTATTAA
JMFF011C15+           AGGTGTAGCATATGCCATTTTGATTATCAAGTCAATCGATATATATGACTCAATTATTAA
                      ____________________________________________________________
consensus             AGGTGTAGCATATGCCATTTTGATTATCAAGTCAATCGATATATATGACTCAATTATTAA
 
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JMFS106H03+           CTCAATACTTCAATCAGCACCGAAAAATTTAACGAGTGAAAATGAATAATCAGTTGATAC
JMFF011C15+           CTCAATACTTCAATCAGCACCGAAAAATTTAACGAGTGAAAATGAATAATCAGTTGATAC
                      ____________________________________________________________
consensus             CTCAATACTTCAATCAGCACCGAAAAATTTAACGAGTGAAAATGAATAATCAGTTGATAC
 
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JMFS106H03+           CTAAATCAACAAGAAGTTTAAAGAGTAACAAATTTGACATACATTTCAGCTACAAGAATC
JMFF011C15+           CTAAATCAACAAGAAGTTTAAAGAGTAACAAATTTGACATACATTTCAGCTACAAGAATC
                      ____________________________________________________________
consensus             CTAAATCAACAAGAAGTTTAAAGAGTAACAAATTTGACATACATTTCAGCTACAAGAATC
 
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JMFS106H03+           AGCAATCAGATGTTCGAAGAAGATATTTGATAT                           
JMFF011C15+           AGCAATCAGATGTTCGAAGAAGATATTTGATATTATCAATGATCACGTAATCGAGTTGAT
                      ____________________________________________________________
consensus             AGCAATCAGATGTTCGAAGAAGATATTTGATATTATCAATGATCACGTAATCGAGTTGAT