Contig 010174:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009L05Sequence610010174 (4)741009278 (7)ref|XP_009616414.1|7e-20PREDICTED: nucleolar MIF4G domain-containing protein 1 [Nicotiana tomentosiform
JMFS047G08Sequence617010174 (4)
JMFS114D10Sequence546010174 (4)
JMSF022M18Sequence626010174 (4)782013969 (2)ref|XP_009773020.1|9e-106PREDICTED: nucleolar MIF4G domain-containing protein 1 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114D10+           TGCGTTCTCTTCTAGATCTATTATCTTCATCCATTATCTAGTATCTGCTCAGAAATGAAT
                      ____________________________________________________________
consensus             TGCGTTCTCTTCTAGATCTATTATCTTCATCCATTATCTAGTATCTGCTCAGAAATGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114D10+           ATCAACTCTGTCTGTGGTTGCAAGTCGGTCTTCAACAGTGGTAAATGACAGTGAGGCTAC
                      ____________________________________________________________
consensus             ATCAACTCTGTCTGTGGTTGCAAGTCGGTCTTCAACAGTGGTAAATGACAGTGAGGCTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114D10+           AGCGTTCAGACTTCAGGGCTCAGGCTACGGTGGTCGGTGGCGAGGAGAGTAAGTGAGTGG
JMFS047G08+           AGCGTTCAGACTTCAGGGCTCAGGCTACGGTGGTCGGTGGCGAGGAGAGTAAGTGAGTGG
JMSF022M18+                                    TACGGTGGTCGGTGGCGAGGAGAGTAAGTGAGTGG
JMFF009L05+                                                             AAGTGAGTGG
                      ____________________________________________________________
consensus             AGCGTTCAGACTTCAGGGCTCAGGCTACGGTGGTCGGTGGCGAGGAGAGTAAGTGAGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114D10+           CTGCGTGAAGTGCCGGCTGCGGGCTAGGTATGGAGGTATAGACTATGCCAGTAAGGTGTT
JMFS047G08+           CTGCGTGAAGTGCCGGCTGCGGGCTAGGTATGGAGGTATAGACTATGCCAGTAAGGTGTT
JMSF022M18+           CTGCGTGAAGTGCCGGCTGCGGGCTAGGTATGGAGGTATAGACTATGCCAGTAAGGTGTT
JMFF009L05+           CTGCGTGAAGTGCCGGCTGCGGGCTAGGTATGGAGGTATAGACTATGCCAGTAAGGTGTT
                      ____________________________________________________________
consensus             CTGCGTGAAGTGCCGGCTGCGGGCTAGGTATGGAGGTATAGACTATGCCAGTAAGGTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114D10+           GGAGTATGCGATTAGGATTCTAATTTCTATATATTAACCTGTGAAACTCTATTGCATTCT
JMFS047G08+           GGAGTATGCGATTAGGATTCTAATTTCTATATATTAACCTGTGAAACTCTATTGCATTCT
JMSF022M18+           GGAGTATGCGATTAGGATTCTAATTTCTATATATTAACCTGTGAAACTCTATTGCATTCT
JMFF009L05+           GGAGTATGCGATTAGGATTCTAATTTCTATATATTAACCTGTGAAACTCTATTGCATTCT
                      ____________________________________________________________
consensus             GGAGTATGCGATTAGGATTCTAATTTCTATATATTAACCTGTGAAACTCTATTGCATTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114D10+           TCAATCTATGACTTAAAATATTATCTATCTACACCACTCCTTAAAATAATTAAGCAGCAC
JMFS047G08+           TCAATCTATGACTTAAAATATTATCTATCTACACCACTCCTTAAAATAATTAAGCAGCAC
JMSF022M18+           TCAATCTATGACTTAAAATATTATCTATCTACACCACTCCTTAAAATAATTAAGCAGCAC
JMFF009L05+           TCAATCTATGACTTAAAATATTATCTATCTACACCACTCCTTAAAATAATTAAGCAGCAC
                      ____________________________________________________________
consensus             TCAATCTATGACTTAAAATATTATCTATCTACACCACTCCTTAAAATAATTAAGCAGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114D10+           AGTAGTGACAGTACGCAGCAAGCCAGCACAGTACGCAACACACCACCAAAATATATTACA
JMFS047G08+           AGTAGTGACAGTACGCAGCAAGCCAGCACAGTACGCAACACACCACCAAAATATATTACA
JMSF022M18+           AGTAGTGACAGTACGCAGCAAGCCAGCACAGTACGCAACACACCACCAAAATATATTACA
JMFF009L05+           AGTAGTGACAGTACGCAGCAAGCCAGCACAGTACGCAACACACCACCAAAATATATTACA
                      ____________________________________________________________
consensus             AGTAGTGACAGTACGCAGCAAGCCAGCACAGTACGCAACACACCACCAAAATATATTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114D10+           AATAATTGTGGGAATGAAGAACTAATATATATATTAAAATAAATATATTAAGCAGCACAG
JMFS047G08+           AATAATTGTGGGAATGAAGAACTAATATATATATTAAAATAAATATATTAAGCAGCACAG
JMSF022M18+           AATAATTGTGGGAATGAAGAACTAATATATATATTAAAATAAATATATTAAGCAGCACAG
JMFF009L05+           AATAATTGTGGGAATGAAGAACTAATATATATATTAAAATAAATATATTAAGCAGCACAG
                      ____________________________________________________________
consensus             AATAATTGTGGGAATGAAGAACTAATATATATATTAAAATAAATATATTAAGCAGCACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114D10+           CACTGTAATATTAAACAGAGGACTGAGGAGTAGTCGACCTACGCAACAAATTTGTGAGAG
JMFS047G08+           CACTGTAATATTAAACAGAGGACTGAGGAGTAGTCGACCTACGCAACAAATTTGTGAGAG
JMSF022M18+           CACTGTAATATTAAACAGAGGACTGAGGAGTAGTCGACCTACGCAACAAATTTGTGAGAG
JMFF009L05+           CACTGTAATATTAAACAGAGGACTGAGGAGTAGTCGACCTACGCAACAAATTTGTGAGAG
                      ____________________________________________________________
consensus             CACTGTAATATTAAACAGAGGACTGAGGAGTAGTCGACCTACGCAACAAATTTGTGAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS114D10+           TGAAGA                                                      
JMFS047G08+           TGAAGACGGAGGACGGAGGAGTAGTCGACCTACGCAGGTTGCAGAGTGGGCAGCGAGGCG
JMSF022M18+           TGAAGACGGAGGACGGAGGAGTAGTCGACCTACGCAGGTTGCAGAGTGGGCAGCGAGGCG
JMFF009L05+           TGAAGACGGAGGACGGAGGAGTAGTCGACCTACGCAGGTTGCAGAGTGGGCAGCGAGGCG
                      ____________________________________________________________
consensus             TGAAGACGGAGGACGGAGGAGTAGTCGACCTACGCAGGTTGCAGAGTGGGCAGCGAGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS047G08+           CCGAGGCCAGACTGCGGAGGGCGTGCGGCAACTCGGTGAGTGAGGCTTGGCGTCGTTGAC
JMSF022M18+           CCGAGGCCAGACTGCGGAGGGCGTGCGGCAACTCGGTGAGTGAGGCTTGGCGTCGTTGAC
JMFF009L05+           CCGAGGCCAGACTGCGGAGGGCGTGCGGCAACTCGGTGAGTGAGGCTTGGCGTCGTTGAC
                      ____________________________________________________________
consensus             CCGAGGCCAGACTGCGGAGGGCGTGCGGCAACTCGGTGAGTGAGGCTTGGCGTCGTTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS047G08+           TGTGGGGCGTGGGCTGTCGGCTACGTCGGGGTGGGAGAAGAGAAACGAGGAAGTGAGAAA
JMSF022M18+           TGTGGGGCGTGGGCTGTCGGCTACGTCGGGGTGGGAGAAGAGAAACGAGGAAGTGAGAAA
JMFF009L05+           TGTGGGGCGTGGGCTGTCGGCTACGTCGGGGTGGGAGAAGAGAAACGAGGAAGTGAGAAA
                      ____________________________________________________________
consensus             TGTGGGGCGTGGGCTGTCGGCTACGTCGGGGTGGGAGAAGAGAAACGAGGAAGTGAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS047G08+           CGGAGAGGACAGAGGAG                                           
JMSF022M18+           CGGAGAGGACAGAGGAGTAGTCTGTGACTCTGTGTAGAAGACCTAGGGTT          
JMFF009L05+           CGGAGAGGACAGAGGAGTAGTCTGTGACTCTGTGTAGAAGACCTAGGGTTAACAAGACAC
                      ____________________________________________________________
consensus             CGGAGAGGACAGAGGAGTAGTCTGTGACTCTGTGTAGAAGACCTAGGGTTAACAAGACAC