Contig 010173:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009K16Sequence556010173 (3)ref|XP_007018244.1|3e-84DsRNA-binding domain-like superfamily protein isoform 2 [Theobroma cacao] gb|EO
JMFF050N17Sequence618010173 (3)ref|XP_007018244.1|1e-95DsRNA-binding domain-like superfamily protein isoform 2 [Theobroma cacao] gb|EO469021344
JMSF049K04Sequence668010173 (3)ref|XP_007018244.1|4e-99DsRNA-binding domain-like superfamily protein isoform 2 [Theobroma cacao] gb|EO

Alignment

This contig is upended


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JMSF049K04+                                                         CTTCAACGGAAGAA
                      ____________________________________________________________
consensus                                                           CTTCAACGGAAGAA
 
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JMSF049K04+           CGGTGTAAGAGGAGTAGTCAGTCGGCCTGTTGTTGGACTTGGAAGGATCAGACTCGATGG
JMFF050N17+                                                     AAGGATCAGACTCGATGG
                      ____________________________________________________________
consensus             CGGTGTAAGAGGAGTAGTCAGTCGGCCTGTTGTTGGACTTGGAAGGATCAGACTCGATGG
 
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JMSF049K04+           CCAATAACGCGGTTCTTGCAGCTTTGAGCTCCGCTTCCTTCTTTGTTCTCGCGGATGCCC
JMFF050N17+           CCAATAACGCGGTTCTTGCAGCTTTGAGCTCCGCTTCCTTCTTGTTTCTCGCGGATGCCC
JMFF009K16+                                                        TTCTCGCGGATGCCC
                      ____________________________________________________________
consensus             CCAATAACGCGGTTCTTGCAGCTTTGAGCTCCGCTTCCTTCTTTTTTCTCGCGGATGCCC
 
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JMSF049K04+           CAATGTACTTAACTCCCCCAATTTCAACAGTACAAGCATACATAGCAGGCTTGCCTGTTG
JMFF050N17+           CAATGTACTTAACTCCCCCAATTTCAACAGTACAAGCATACATAGCAGGCTTGCCTGTTG
JMFF009K16+           CAATGTACTTAACTCCCCCAATTTCAACAGTACAAGCATACATAGCAGGCTTGCCTGTTG
                      ____________________________________________________________
consensus             CAATGTACTTAACTCCCCCAATTTCAACAGTACAAGCATACATAGCAGGCTTGCCTGTTG
 
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JMSF049K04+           CTTCCTCCTTTCGGCATTCATACAATGGAATCGCGAAATTCATCTTTTGTGCATATTCTT
JMFF050N17+           CTTCCTCCTTTCGGCATTCATACAATGGAATCGCGAAATTCATCTTTTGTGCATATTCTT
JMFF009K16+           CTTCCTCCTTTCGGCATTCATACAATGGAATCGCGAAATTCATCTTTTGTGCATATTCTT
                      ____________________________________________________________
consensus             CTTCCTCCTTTCGGCATTCATACAATGGAATCGCGAAATTCATCTTTTGTGCATATTCTT
 
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JMSF049K04+           GTAATAGGTTTTTGCACAAGCCTGTGTCGTGCACTGGTTGCGAAATGCATTCTTTCCTTT
JMFF050N17+           GTAATAGGTTTTTGCACAAGCCTGTGTCGTGCACTGGTTGCGAAATGCATTCTTTCCTTT
JMFF009K16+           GTAATAGGTTTTTGCACAAGCCTGTGTCGTGCACTGGTTGCGAAATGCATTCTTTCCTTT
                      ____________________________________________________________
consensus             GTAATAGGTTTTTGCACAAGCCTGTGTCGTGCACTGGTTGCGAAATGCATTCTTTCCTTT
 
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JMSF049K04+           CCCCAGACCGAGAAAGTTCGACGAGAGCAACTTCAGCAGCTGACTGCTCTGCTGCCTTGC
JMFF050N17+           CCCCAGACCGAGAAAGTTCGACGAGAGCAACTTCAGCAGCTGACTGCTCTGCTGCCTTGC
JMFF009K16+           CCCCAGACCGAGAAAGTTCGACGAGAGCAACTTCAGCAGCTGACTGCTCTGCTGCCTTGC
                      ____________________________________________________________
consensus             CCCCAGACCGAGAAAGTTCGACGAGAGCAACTTCAGCAGCTGACTGCTCTGCTGCCTTGC
 
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JMSF049K04+           GATTAAAAAATCCGGGTAGGGAATCATATCTGGTGTCGCTCACGATCACCGTCGACCTAA
JMFF050N17+           GATTAAAAAATCCGGGTAGGGAATCATATCTGGTGTCGCTCACGATCACCGTCGACCTAA
JMFF009K16+           GATTAAAAAATCCGGGTAGGGAATCATATCTGGTGTCGCTCACGATCACCGTCGACCTAA
                      ____________________________________________________________
consensus             GATTAAAAAATCCGGGTAGGGAATCATATCTGGTGTCGCTCACGATCACCGTCGACCTAA
 
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JMSF049K04+           AAGTGGGTTCATGGGAAGGTCCTTCCTTTATAGTCTCATAAACAGGTGTAGGAAGTCCAA
JMFF050N17+           AAGTGGGTTCATGGGAAGGTCCTTCCTTTATAGTCTCATAAACAGGTGTAGGAAGTCCAA
JMFF009K16+           AAGTGGGTTCATGGGAAGGTCCTTCCTTTATAGTCTCATAAACAGGTGTAGGAAGTCCAA
                      ____________________________________________________________
consensus             AAGTGGGTTCATGGGAAGGTCCTTCCTTTATAGTCTCATAAACAGGTGTAGGAAGTCCAA
 
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JMSF049K04+           CTTTCTGAGCATACTCTTGCAAGCGACTTTTGAACACATAACAGTTTGATACACCTTGGA
JMFF050N17+           CTTTCTGAGCATACTCTTGCAAGCGACTTTTGAACACATAACAGTTTGATACACCTTGGA
JMFF009K16+           CTTTCTGAGCATACTCTTGCAAGCGACTTTTGAACACATAACAGTTTGATACACCTTGGA
                      ____________________________________________________________
consensus             CTTTCTGAGCATACTCTTGCAAGCGACTTTTGAACACATAACAGTTTGATACACCTTGGA
 
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JMSF049K04+           AGCTCTCGCTAGCAGACATTTCAGGTCGGCGTTTCGGAATGAGAATCCGGCAAGGCAAGA
JMFF050N17+           AGCTCTCGCTAGCAGACATTTCAGGTCGGCGTTTCGGAATGAGAATCCGGCAAGGCAAGA
JMFF009K16+           AGCTCTCGCTAGCAGACATTTCAGGTCGGCGTTTCGGAATGAGAATCCGGCAAGGCAAGA
                      ____________________________________________________________
consensus             AGCTCTCGCTAGCAGACATTTCAGGTCGGCGTTTCGGAATGAGAATCCGGCAAGGCAAGA
 
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JMSF049K04+           GCTAAGCCGAGAGAAAACCGGACCACCTTTTTATCTTGAAGTGTCTGAGACCT       
JMFF050N17+           GCTAAGCCGAGAGAAAACCGGACCACCTTTTTATCTTGAAGTGTCTGAGACCT       
JMFF009K16+           GCTAAGCCGAGAGAAAACCGGACCACCTTTTTATCTTGAAGTGTCTGAGACCTGAGGGAC
                      ____________________________________________________________
consensus             GCTAAGCCGAGAGAAAACCGGACCACCTTTTTATCTTGAAGTGTCTGAGACCTGAGGGAC