| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009G24 | Sequence | 580 | 010170 (2) | ref|XP_009775110.1| | 5e-37 | PREDICTED: uroporphyrinogen decarboxylase, chloroplastic-like isoform X2 [Nicot | 721 | 002892 (2) | ref|XP_009610649.1| | 5e-93 | PREDICTED: uroporphyrinogen decarboxylase, chloroplastic [Nicotiana tomentosifo |
| JMSF028O11 | Sequence | 626 | 010170 (2) | ref|XP_009775109.1| | 7e-70 | PREDICTED: uroporphyrinogen decarboxylase, chloroplastic-like isoform X1 [Nicot | 725 | 002892 (2) | ref|XP_009610649.1| | 3e-105 | PREDICTED: uroporphyrinogen decarboxylase, chloroplastic [Nicotiana tomentosifo |
This contig is upended
. : . : . : . : . : . :
JMSF028O11+ CCCCAACATATGGAACTGACTCTTCAGGGTTGAATTCTCT
____________________________________________________________
consensus CCCCAACATATGGAACTGACTCTTCAGGGTTGAATTCTCT
. : . : . : . : . : . :
JMSF028O11+ AACTTTCTCAACATCTGCAGCAGTTTGCATAGGATCAAATATGACGGGACCTTTCCCCTT
JMFF009G24+ TGCAGCAGTTTGCATAGGATCAAATATGACGGGACCTTTCCCCTT
____________________________________________________________
consensus AACTTTCTCAACATCTGCAGCAGTTTGCATAGGATCAAATATGACGGGACCTTTCCCCTT
. : . : . : . : . : . :
JMSF028O11+ AATGATGTCAAAGGGTATGTTCATTCCGGAGAGAGGGGTAAGAATGTCTGAAAATAAAAT
JMFF009G24+ AATGATGTCAAAGGGTATGTTCATTCCGGAGAGAGGGGTAAGAATGTCTGAAAATAAAAT
____________________________________________________________
consensus AATGATGTCAAAGGGTATGTTCATTCCGGAGAGAGGGGTAAGAATGTCTGAAAATAAAAT
. : . : . : . : . : . :
JMSF028O11+ AACCCCGTCTGGACGAAATACTTTCCATGGCTGTAGAGAAATTTCCACCACAAGGTCCAC
JMFF009G24+ AACCCCGTCTGGACGAAATACTTTCCATGGCTGTAGAGAAATTTCCACCACAAGGTCCAC
____________________________________________________________
consensus AACCCCGTCTGGACGAAATACTTTCCATGGCTGTAGAGAAATTTCCACCACAAGGTCCAC
. : . : . : . : . : . :
JMSF028O11+ ATTTTCTGATCTCTCACGAAAAGAAGGATACTTCTCACAAATAATTTGATAACTCTGCCT
JMFF009G24+ ATTTTCTGATCTCTCACG-AAAGAAGGATACTTCTCACAAATAATTTGATAACT----CT
____________________________________________________________
consensus ATTTTCTGATCTCTCACGAAAAGAAGGATACTTCTCACAAATAATTTGATAACTCTGCCT
. : . : . : . : . : . :
JMSF028O11+ TCATGTACCTCCCTGCTTGTCTCATAAGCCAAACGGGAGGCCTTTCCACTTCTTTCCCAC
JMFF009G24+ TCATGTACCTCCCTGCTTGTCTCATAAGCCAAACGGGAGGCCTTTCCACTTCTTTCCCAC
____________________________________________________________
consensus TCATGTACCTCCCTGCTTGTCTCATAAGCCAAACGGGAGGCCTTTCCACTTCTTTCCCAC
. : . : . : . : . : . :
JMSF028O11+ GAACAGCATCGAGCAAAAGAGGTTCAGTAGCATTAATAGCTTTTGGTTCCGCAACAGTCC
JMFF009G24+ GAACAGCATCGAGCAAAAGAGGTTCAGTAGCATTAATAGCTTTTGGTTCCGCAACAGTCC
____________________________________________________________
consensus GAACAGCATCGAGCAAAAGAGGTTCAGTAGCATTAATAGCTTTTGGTTCCGCAACAGTCC
. : . : . : . : . : . :
JMSF028O11+ CTCCAACGGAGCAATAGATTCTTGGTTTGAAGTTAGAGCGAGAAGGAGAAGAATTGAGGG
JMFF009G24+ CTCCAACGGAGCAATAGATTCTTGGTTTGAAGTTAGAGCGAGAAGGAGAAGAATTGAGGG
____________________________________________________________
consensus CTCCAACGGAGCAATAGATTCTTGGTTTGAAGTTAGAGCGAGAAGGAGAAGAATTGAGGG
. : . : . : . : . : . :
JMSF028O11+ TGGCCTTAGCGGAAACAGAGATTGCCGAGAAAGATGGAGCTGAGATGTGAATGCAAGACA
JMFF009G24+ TGGCCTTAGCGGAAACAGAGATTGCCGAGAAAGATGGAGCTGAGATGTGAATGCAAGACA
____________________________________________________________
consensus TGGCCTTAGCGGAAACAGAGATTGCCGAGAAAGATGGAGCTGAGATGTGAATGCAAGACA
. : . : . : . : . : . :
JMSF028O11+ TTTTTTTGTGGCATGAAATTCTTTAGCAAACTGCAAGGGAGTTTTGTCTGGGCATGAAAT
JMFF009G24+ TTTTTTTGTGGCATGAAATTCTTTAGCAAACTGCAAGGGAGTTTTGTCTGGGCATGAAAT
____________________________________________________________
consensus TTTTTTTGTGGCATGAAATTCTTTAGCAAACTGCAAGGGAGTTTTGTCTGGGCATGAAAT
. : . : . : . : . : . :
JMSF028O11+ TTCTTAGCATCTCAAGACATTAAAAAAAATTCAGGAACCTT
JMFF009G24+ TTCTTAGCATCTCAAGACATTAAAAAAAATTCAGGAACCTTCGACAAGAAAGGGGATTTT
____________________________________________________________
consensus TTCTTAGCATCTCAAGACATTAAAAAAAATTCAGGAACCTTCGACAAGAAAGGGGATTTT