| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007M05 | Sequence | 571 | 010161 (4) | emb|CDP16349.1| | 4e-55 | unnamed protein product [Coffea canephora] | 734 | 010982 (2) | ref|XP_009777003.1| | 6e-63 | PREDICTED: F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Nicotian |
| JMFN013I22 | Sequence | 627 | 010161 (4) | ref|XP_009777006.1| | 7e-86 | PREDICTED: F-box/WD-40 repeat-containing protein At3g52030 isoform X3 [Nicotian | |||||
| JMFS036C01 | Sequence | 606 | 010161 (4) | ref|XP_009777006.1| | 2e-71 | PREDICTED: F-box/WD-40 repeat-containing protein At3g52030 isoform X3 [Nicotian | |||||
| JMSF006G08 | Sequence | 390 | 010161 (4) | emb|CDP16349.1| | 8e-26 | unnamed protein product [Coffea canephora] | 430 | 010982 (2) | ref|XP_009777003.1| | 8e-17 | PREDICTED: F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Nicotian |
This contig is upended
. : . : . : . : . : . :
JMFN013I22+ CCCATCCTCACATCCAATCACAGCTTCTGGATCAACATAACGCATACAGAGTCCCTTTGG
JMFS036C01+ GTCCCTTTGG
____________________________________________________________
consensus CCCATCCTCACATCCAATCACAGCTTCTGGATCAACATAACGCATACAGAGTCCCTTTGG
. : . : . : . : . : . :
JMFN013I22+ GAACAAGGCATCACGTGAGGATAGTATACTTCTTGTTTCAGTCCGACTCCATATACATAT
JMFS036C01+ GAACAAGGCATCACGTGAGGATAGTATACTTCTTGTTTCAGTCCGACTCCATATACATAT
____________________________________________________________
consensus GAACAAGGCATCACGTGAGGATAGTATACTTCTTGTTTCAGTCCGACTCCATATACATAT
. : . : . : . : . : . :
JMFN013I22+ CCGGGTACCAACCAAACCAACAACCTTGCTCTCATCAAAATCAAAATCAATTAGAGGGGC
JMFS036C01+ CCGGGTACCAACCAAACCAACAACCTTGCTCTCATCAAAATCAAAATCAATTAGAGGGGC
JMFF007M05+ TCTCATCAAAATCAAAATCAATTAGAGGGGC
____________________________________________________________
consensus CCGGGTACCAACCAAACCAACAACCTTGCTCTCATCAAAATCAAAATCAATTAGAGGGGC
. : . : . : . : . : . :
JMFN013I22+ TTTATCAGGGAGAACGTATTCATCCAAGCATTTGTAGCTTTCTGCTGACCAGAGTCGCAT
JMFS036C01+ TTTATCAGGGAGAACGTATTCATCCAAGCATTTGTAGCTTTCTGCTGACCAGAGTCGCAT
JMFF007M05+ TTTATCAGGGAGAACGTATTCATCCAAGCATTTGTAGCTTTCTGCTGACCAGAGTCGCAT
____________________________________________________________
consensus TTTATCAGGGAGAACGTATTCATCCAAGCATTTGTAGCTTTCTGCTGACCAGAGTCGCAT
. : . : . : . : . : . :
JMFN013I22+ GACCTTATCACCCACACCAGTAAGAAAATGTCCCATCTTCATCCGGCACTGATTAACCCC
JMFS036C01+ GACCTTATCACCCACACCAGTAAGAAAATGTCCCATCTTCATCCGGCACTGATTAACCCC
JMSF006G08+ CACTGATTAACCCC
JMFF007M05+ GACCTTATCACCCACACCAGTAAGAAAATGTCCCATCTTCATCCGGCACTGATTAACCCC
____________________________________________________________
consensus GACCTTATCACCCACACCAGTAAGAAAATGTCCCATCTTCATCCGGCACTGATTAACCCC
. : . : . : . : . : . :
JMFN013I22+ GACTGAATGGCCTCTCCACTGGAAAACTTTGGCAGGACCATCCACTAAGGCAAACCTGTG
JMFS036C01+ GACTGAATGGCCTCTCCACTGGAAAACTTTGGCAGGACCATCCACTAAGGCAAACCTGTG
JMSF006G08+ GACTGAATGGCCTCTCCACTGGAAAACTTTGGCAGGACCATCCACTAAGGCAAACCTGTG
JMFF007M05+ GACTGAATGGCCTCTCCACTGGAAAACTTTGGCAGGACCATCCACTAAGGCAAACCTGTG
____________________________________________________________
consensus GACTGAATGGCCTCTCCACTGGAAAACTTTGGCAGGACCATCCACTAAGGCAAACCTGTG
. : . : . : . : . : . :
JMFN013I22+ TGTTAGCATAGCTAACCGCTCCAAATGTTCACTAAATGATCCTGTAGGTAAAGATATCTG
JMFS036C01+ TGTTAGCATAGCTAACCGCTCCAAATGTTCACTAAATGATCCTGTAGGTAAAGATATCTG
JMSF006G08+ TGTTAGCATAGCTAACCGCTCCAAATGTTCACTAAATGATCCTGTAGGTAAAGATATCTG
JMFF007M05+ TGTTAGCATAGCTAACCGCTCCAAATGTTCACTAAATGATCCTGTAGGTAAAGATATCTG
____________________________________________________________
consensus TGTTAGCATAGCTAACCGCTCCAAATGTTCACTAAATGATCCTGTAGGTAAAGATATCTG
. : . : . : . : . : . :
JMFN013I22+ ACTGTTGTCATCAGGATCATTTTTCTGTTGCTGCTGATACCGTCTGTGAATGACTTTTCT
JMFS036C01+ ACTGTTGTCATCAGGATCATTTTTCTGTTGCTGCTGATACCGTCTGTGAATGACTTTTCT
JMSF006G08+ ACTGTTGTCATCAGGATCATTTTTCTGTTGCTGCTGATACCGTCTGTGAATGACTTTTCT
JMFF007M05+ ACTGTTGTCATCAGGATCATTTTTCTGTTGCTGCTGATACCGTCTGTGAATGACTTTTCT
____________________________________________________________
consensus ACTGTTGTCATCAGGATCATTTTTCTGTTGCTGCTGATACCGTCTGTGAATGACTTTTCT
. : . : . : . : . : . :
JMFN013I22+ CCAAGATGAGCAGACGACAGAGCAGCGAATAACCTCGGCGAGATCGAGGAAGGCAAAAAT
JMFS036C01+ CCAAGATGAGCAGACGACAGAGCAGCGAATAACCTCGGCGAGATCGAGGAAGGCAAAAAT
JMSF006G08+ CCAAGATGAGCAGACGACAGAGCAGCGAATAACCTCGGCGAGATCGAGGAAGGCAAAAAT
JMFF007M05+ CCAAGATGAGCAGACGACAGAGCAGCGAATAACCTCGGCGAGATCGAGGAAGGCAAAAAT
____________________________________________________________
consensus CCAAGATGAGCAGACGACAGAGCAGCGAATAACCTCGGCGAGATCGAGGAAGGCAAAAAT
. : . : . : . : . : . :
JMFN013I22+ AATTCCGAGGGAGTCATCGCTGAGGTCTTGAATTCTCGTCCTCCTAGCTTTCTTCGGCGG
JMFS036C01+ AATTCCGAGGGAGTCATCGCTGAGGTCTTGAATTCTCGTCCTCCTAGCTTTCTTCGGCGG
JMSF006G08+ AATTCCGAGGGAGTCATCGCTGAGGTCTTGAATTCTCGTCCTCCTAGCTTTCTTCGGCGG
JMFF007M05+ AATTCCGAGGGAGTCATCGCTGAGGTCTTGAATTCTCGTCCTCCTAGCTTTCTTCGGCGG
____________________________________________________________
consensus AATTCCGAGGGAGTCATCGCTGAGGTCTTGAATTCTCGTCCTCCTAGCTTTCTTCGGCGG
. : . : . : . : . : . :
JMFN013I22+ ACGCCGGAGGCCCGCCGCCGATGGCTC
JMFS036C01+ ACGCCGGAGGCCCGCCGCCGATGGCTCCATAATATCGACCGGGTCGGCTCAGGACT
JMSF006G08+ ACGCCGGAGGCCCGCCGCCGATGGCTCCATAATATCGACCGGGTCGGCTCAGGACTTCAG
JMFF007M05+ ACGCCGGAGGCCCGCCGCCGATGGCTCCATAATATCGACCGGGTCGGCTCAGGACTTCAG
____________________________________________________________
consensus ACGCCGGAGGCCCGCCGCCGATGGCTCCATAATATCGACCGGGTCGGCTCAGGACTTCAG
. : . : . : . : . : . :
JMSF006G08+ GGTAGAAGAGA
JMFF007M05+ GGTAGAAGAGAAGTCTCGACTTCGAACCGCGGTGTCACTATTTAATAGCATATGAATTGT
____________________________________________________________
consensus GGTAGAAGAGAAGTCTCGACTTCGAACCGCGGTGTCACTATTTAATAGCATATGAATTGT