Contig 010159:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007J22Sequence571010159 (3)gb|AAK48848.1|AF350939_12e-33expansin [Prunus cerasus]758010159 (3)ref|XP_003609913.1|6e-74Expansin [Medicago truncatula] gb|AES92110.1| expansin A1 [Medicago truncatula]
JMFN040M11Sequence605010159 (3)ref|XP_002266243.1|1e-34PREDICTED: expansin-A4 [Vitis vinifera]

Alignment

This contig is upended


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rJMFF007J22-                   ATTTTGCTTGCGTGTATCTCAATTATTTCAACGTACACTGCCGTGCATTTA
                      ____________________________________________________________
consensus                      ATTTTGCTTGCGTGTATCTCAATTATTTCAACGTACACTGCCGTGCATTTA
 
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rJMFF007J22-          CATATGCAGAAATGAAACCTAATAAGATTTTAGAAGTGATGCATGTGATGTGCATTATAT
                      ____________________________________________________________
consensus             CATATGCAGAAATGAAACCTAATAAGATTTTAGAAGTGATGCATGTGATGTGCATTATAT
 
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rJMFF007J22-          TGGCAATTAAGTTGGCAATTATTGGCAAGTTTTATCTATCGGCAGTTTCGGCCTTCGAAT
                      ____________________________________________________________
consensus             TGGCAATTAAGTTGGCAATTATTGGCAAGTTTTATCTATCGGCAGTTTCGGCCTTCGAAT
 
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rJMFF007J22-          GTCTGGCCGTACTGCCACGACTTGGGGGCGACATTCTGGGAAGTGACTGCTTTGCCATCA
                      ____________________________________________________________
consensus             GTCTGGCCGTACTGCCACGACTTGGGGGCGACATTCTGGGAAGTGACTGCTTTGCCATCA
 
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rJMFF007J22-          TTTGTGGTGACCCTAAAATTGAGAGATTTCCCAGACAGCATTGCATTGGTCTCCCATTTC
                      ____________________________________________________________
consensus             TTTGTGGTGACCCTAAAATTGAGAGATTTCCCAGACAGCATTGCATTGGTCTCCCATTTC
 
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rJMFF007J22-          TCACCCCAGTTGCGTTTCAGCGGTACCCACTTCTCCTCCCCTTCAGCATTCACCTCCACC
                      ____________________________________________________________
consensus             TCACCCCAGTTGCGTTTCAGCGGTACCCACTTCTCCTCCCCTTCAGCATTCACCTCCACC
 
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rJMFF007J22-          TTTGAAACATCCCCGCTTCCTCCAACATTTGACACCGTCACTAGGTTGAAGAACTGATGT
JMFN040M11+                                                     AGGTTGAAGAACTGATGT
                      ____________________________________________________________
consensus             TTTGAAACATCCCCGCTTCCTCCAACATTTGACACCGTCACTAGGTTGAAGAACTGATGT
 
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rJMFF007J22-          CCTGACATCGTAAACCGCTCTCCTCCTTTTCTCATGCATGGAACCCTGCGATAGAACACC
JMFN040M11+           CCTGACATCGTAAACCGCTCTCCTCCTTTTCTCATGCATGGAACCCTGCGATAGAACACC
JMFF007J22+                                      TTTCTCATGCATGGAACCCTGCGATAGAACACC
                      ____________________________________________________________
consensus             CCTGACATCGTAAACCGCTCTCCTCCTTTTCTCATGCATGGAACCCTGCGATAGAACACC
 
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rJMFF007J22-          GGAACAACCCCGGCTTTGTACTCTGCAATTTGGAGATATGCAGGCATAGATAGGTCAAAA
JMFN040M11+           GGAACAACCCCGGCTTTGTACTCTGCAATTTGGAGATATGCAGGCATAGATAGGTCAAAA
JMFF007J22+           GGAACAACCCCGGCTTTGTACTCTGCAATTTGGAGATATGCAGGCATAGATAGGTCAAAA
                      ____________________________________________________________
consensus             GGAACAACCCCGGCTTTGTACTCTGCAATTTGGAGATATGCAGGCATAGATAGGTCAAAA
 
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rJMFF007J22-          TGTGCCTGTGGCGGAGCGCACCATTTTCCGTCGCCCGTCGGGCAAAGATCGGTGGCTGTA
JMFN040M11+           TGTGCCTGTGGCGGAGCGCACCATTTTCCGTCGCCCGTCGGGCAAAGATCGGTGGCTGTA
JMFF007J22+           TGTGCCTGTGGCGGAGCGCACCATTTTCCGTCGCCCGTCGGGCAAAGATCGGTGGCTGTA
                      ____________________________________________________________
consensus             TGTGCCTGTGGCGGAGCGCACCATTTTCCGTCGCCCGTCGGGCAAAGATCGGTGGCTGTA
 
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rJMFF007J22-          ACGATGATGGGCTTTTGGGGTGTCTTGCATTGCCCTGTGCTATTTACGCATTTTATTTCG
JMFN040M11+           ACGATGATGGGCTTTTGGGGTGTCTTGCATTGCCCTGTGCTATTTACGCATTTTATTTCG
JMFF007J22+           ACGATGATGGGCTTTTGGGGTGTCTTGCATTGCCCTGTGCTATTTACGCATTTTATTTCG
                      ____________________________________________________________
consensus             ACGATGATGGGCTTTTGGGGTGTCTTGCATTGCCCTGTGCTATTTACGCATTTTATTTCG
 
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rJMFF007J22-          TAGCAGGCTCCGCAGCTTGCTGCATTGTTGAACAATGCTGCGCTCAAAGCTGTAGTGTAT
JMFN040M11+           TAGCAGGCTCCGCAGCTTGCTGCATTGTTGAACAATGCTGCGCTCAAAGCTGTAGTGTAT
JMFF007J22+           TAGCAGGCTCCGCAGCTTGCTGCATTGTTGAACAATGCTGCGCTCAAAGCTGTAGTGTAT
                      ____________________________________________________________
consensus             TAGCAGGCTCCGCAGCTTGCTGCATTGTTGAACAATGCTGCGCTCAAAGCTGTAGTGTAT
 
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rJMFF007J22-          GGGGAATAAGTTTCCTTAAACTGCTCAAGCCCACAAGCCCCGCCAAT             
JMFN040M11+           GGGGAATAAGTTTCCTTAAACTGCTCAAGCCCACAAGCCCCGCCAATGGTTCCCTCAGGG
JMFF007J22+           GGGGAATAAGTTTCCTTAAACTGCTCAAGCCCACAAGCCCCGCCAATGGTTCCCTCA-GG
                      ____________________________________________________________
consensus             GGGGAATAAGTTTCCTTAAACTGCTCAAGCCCACAAGCCCCGCCAATGGTTCCCTCAGGG
 
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JMFN040M11+           GGGGCCATAAAAGGTGGCATGAGCATCCAACCATCCATGCGCTGAATCGCCGCCAAATAC
JMFF007J22+           GGGGCCATAAAAGGTGGCATGAGCATCCAACCATCCATGCGCTGAATCGCCGCCAAATAC
                      ____________________________________________________________
consensus             GGGGCCATAAAAGGTGGCATGAGCATCCAACCATCCATGCGCTGAATCGCCGCCAAATAC
 
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JMFN040M11+           ACACGGTAATGCACATAACACAATCAATAATATTGAGGCTTGCAATTCTGTTGCCATGGC
JMFF007J22+           ACACGGTAATGCACATAACACAATCAATAATATTGAGGCTTGCAATTCTGTTGCCATGGC
                      ____________________________________________________________
consensus             ACACGGTAATGCACATAACACAATCAATAATATTGAGGCTTGCAATTCTGTTGCCATGGC
 
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JMFN040M11+           GGCAGTGATGATCAACACGCTAAGCTAAAGATATTTTTTTTGAGATCATAAACAATGAAA
JMFF007J22+           GGCAGTGATGATCAACACGCTAAGCTAAAGATA-TTTTTTTGAGATCATAAACAATGAAA
                      ____________________________________________________________
consensus             GGCAGTGATGATCAACACGCTAAGCTAAAGATATTTTTTTTGAGATCATAAACAATGAAA
 
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JMFN040M11+           TTCAAATAAATTTTGAATTTGTTGTTTATGATCTCAAAAAATACTGT             
JMFF007J22+           TTCAAATAAATTTTGAATTTGTTGTTTATGATCTCAAAAAATACTGTTTATTTTTTCCTC
                      ____________________________________________________________
consensus             TTCAAATAAATTTTGAATTTGTTGTTTATGATCTCAAAAAATACTGTTTATTTTTTCCTC