| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005G16 | Sequence | 441 | 010147 (8) | ref|XP_010052931.1| | 1e-06 | PREDICTED: rho GDP-dissociation inhibitor 1-like [Eucalyptus grandis] gb|KCW770 | 770 | 010147 (8) | ref|XP_009590992.1| | 3e-111 | PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X1 [Nicotiana tomentos |
| JMFF007I01 | Sequence | 521 | 010147 (8) | ref|XP_009590993.1| | 2e-42 | PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X2 [Nicotiana tomentos | 653 | 010147 (8) | ref|XP_009786107.1| | 3e-97 | PREDICTED: rho GDP-dissociation inhibitor 1-like [Nicotiana sylvestris] |
| JMFF026D16 | Sequence | 534 | 010147 (8) | ref|XP_009590993.1| | 1e-66 | PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X2 [Nicotiana tomentos | 725 | 010147 (8) | ref|XP_009795269.1| | 2e-113 | PREDICTED: rho GDP-dissociation inhibitor 1 [Nicotiana sylvestris] |
| JMFF048G09 | Sequence | 313 | 010147 (8) | ref|XP_006365854.1| | 1e-20 | PREDICTED: rho GDP-dissociation inhibitor 1-like [Solanum tuberosum] | 548 | 010147 (8) | ref|XP_009786107.1| | 4e-52 | PREDICTED: rho GDP-dissociation inhibitor 1-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF048G09- AGAAAACAAACACCCAAGTAAATACATAAACCAA
____________________________________________________________
consensus AGAAAACAAACACCCAAGTAAATACATAAACCAA
. : . : . : . : . : . :
rJMFF048G09- AGGCATTCCAAAATGTAATGGTCCAAAACTCAACTTTATTGAACAAAACAAAACAAAAAA
rJMFF005G16- AATGTAATGGTCCAAAACTCAACTTTATTGAACAAAACAAAACAAAAAA
____________________________________________________________
consensus AGGCATTCCAAAATGTAATGGTCCAAAACTCAACTTTATTGAACAAAACAAAACAAAAAA
. : . : . : . : . : . :
rJMFF048G09- CAAACAAAAACAAACAAAAAATCTAACTTGCTATAAGTTCTACCACTCCTATCAAGTGCA
rJMFF007I01- AAAAATCTAACTTGCTATAAGTTCTACCACTCCTATCAAGTGCA
rJMFF005G16- CAAACAAAAACAAACAAAAAATCTAACTTGCTATAAGTTCTACCACTCCTATCAAGTGCA
rJMFF026D16- AAAAATCTAACTTGCTATAAGTTCTACCACTCCTATCAAGTGCA
____________________________________________________________
consensus CAAACAAAAACAAACAAAAAATCTAACTTGCTATAAGTTCTACCACTCCTATCAAGTGCA
. : . : . : . : . : . :
rJMFF048G09- GCAGGAGTTTTCCCCTTTCCTCTCCAGAAAAAAACCAGTGGAAAAGACAAACATAATTAA
rJMFF007I01- GCAGGAGTTTTCCCCTTTCCTCTCCAGAAAAAAACCAGTGGAAAAGACAAACATAATTAA
rJMFF005G16- GCAGGAGTTTTCCCCTTTCCTCTCCAGAAAAAAACCAGTGGAAAAGACAAACATAATTAA
rJMFF026D16- GCAGGAGTTTTCCCCTTTCCTCTCCAGAAAAAAACCAGTGGAAAAGACAAACATAATTAA
____________________________________________________________
consensus GCAGGAGTTTTCCCCTTTCCTCTCCAGAAAAAAACCAGTGGAAAAGACAAACATAATTAA
. : . : . : . : . : . :
rJMFF048G09- CTAATGATGAACAAAAAGAAACATCCCAGGTAACAATGTTCAAGATTACCCTGTTGCAGG
rJMFF007I01- CTAATGATGAACAAAAAGAAACATCCCAGGTAACAATGTTCAAGATTACCCTGTTGCAGG
rJMFF005G16- CTAATGATGAACAAAAAGAAACATCCCAGGTAACAATGTTCAAGATTACCCTGTTGCAGG
rJMFF026D16- CTAATGATGAACAAAAAGAAACATCCCAGGTAACAATGTTCAAGATTACCCTGTTGCAGG
____________________________________________________________
consensus CTAATGATGAACAAAAAGAAACATCCCAGGTAACAATGTTCAAGATTACCCTGTTGCAGG
. : . : . : . : . : . :
rJMFF048G09- CAATTCTTTCTTGATTTCAAATGTATAGTTGATCTCCAGGTGACACTTATTATCGTCATC
rJMFF007I01- CCATTCTTTCTTGATTTCAAATGTATAGTTGATCTCCAGGTGACACTTATTATCGTCATC
rJMFF005G16- CCATTCTTTCTTGATTTCAAATGTATAGTTGATCTCCAGGTGACACTTATTATCGTCATC
rJMFF026D16- CCATTCTTTCTTGATTTCAAATGTATAGTTGATCTCCAGGTGACACTTATTATCGTCATC
____________________________________________________________
consensus CCATTCTTTCTTGATTTCAAATGTATAGTTGATCTCCAGGTGACACTTATTATCGTCATC
. : . : . : . : . : . :
rJMFF048G09- AAGGAACTTTGTCTTCGCGGAGTATGATCCTCTAGCAAACATCCCAGAGGGCGTTGTCTC
rJMFF007I01- AAGGAACTTTGTCTTCGCGGAGTATGATCCTCTAGCAAACATCCCAGAGGGCGTTGTCTC
rJMFF005G16- AAGGAACTTTGTCTTCGCGGAGTATGATCCTCTAGCAAACATCCCAGAGGGCGTTGTCTC
rJMFF026D16- AAGGAACTTTGTCTTCGCGGAGTATGATCCTCTAGCAAACATCCCAGAGGGCGTTGTCTC
____________________________________________________________
consensus AAGGAACTTTGTCTTCGCGGAGTATGATCCTCTAGCAAACATCCCAGAGGGCGTTGTCTC
. : . : . : . : . : . :
rJMFF048G09- TTCTGGCATTTCATGAGTATAAGGCTCCAGTTGAGGACTAAAGGTCCCAATCATTTCTTT
rJMFF007I01- TTCTGGCATTTCATGAGTATAAGGCTCCAGTTGAGGACTAAAGGTCCCAATCATTTCTTT
rJMFF005G16- TTCTGGCATTTCATGAGTATAAGGCTCCAGTTGAGGACTAAAGGTCCCAATCATTTCTTT
rJMFF026D16- TTCTGGCATTTCATGAGTATAAGGCTCCAGTTGAGGACTAAAGGTCCCAATCATTTCTTT
____________________________________________________________
consensus TTCTGGCATTTCATGAGTATAAGGCTCCAGTTGAGGACTAAAGGTCCCAATCATTTCTTT
. : . : . : . : . : . :
rJMFF048G09- TGATCCATCCACTTTCATGCCAGTTTTCCATACTGTGTTTGTGTATTTCAGACCAGAAAC
rJMFF007I01- TGATCCATCCACTTTCATGCCAGTTTTCCATACTGTGTTTGTGTATTTCAGACCAGAAAC
rJMFF005G16- TGATCCATCCACTTTCATGCCAGTTTTCCATACTGTGTTTGTGTATTTCAGACCAGAAAC
rJMFF026D16- TGATCCATCCACTTTCATGCCAGTTTTCCATACTGTGTTTGTGTATTTCAGACCAGAAAC
JMFF026D16+ TGATCCATCCACTTTCATGCCAGTTTTCCATACTGTGTTTGTGTATTTCAGACCAGAAAC
____________________________________________________________
consensus TGATCCATCCACTTTCATGCCAGTTTTCCATACTGTGTTTGTGTATTTCAGACCAGAAAC
. : . : . : . : . : . :
rJMFF048G09- TATGTTATTGCTGACCTGAAATGCAAATTTAAGG
rJMFF007I01- TATGTTATTGCTGACCTGAAATGCAAATTTAAGGCTGTAACGACTCCCTTCTTTCAATAT
rJMFF005G16- TATGTTATTGCTGACCTGAAATGCAAATTTAAGGCTGTAACGACTCCCTTCTTTCAATAT
rJMFF026D16- TATGTTATTGCTGACCTGAAATGCAAATTTAAGGCTGTAACGACTCCCTTCTTTCAATAT
JMFF026D16+ TATGTTATTGCTGACCTGAAATGCAAATTTAAGGCTGTAACGACTCCCTTCTTTCAATAT
JMFF007I01+ ATGCAAATTTAAGGNTGTAANGACTCCNTTNTTTCAATAT
____________________________________________________________
consensus TATGTTATTGCTGACCTGAAATGCAAATTTAAGGCTGTAACGACTCCCTTCTTTCAATAT
. : . : . : . : . : . :
rJMFF007I01- GAACCACGGGCTAGGAGGATTTCCATCCCTCGGGATTGGGAGAACGATATCAGGTCTACC
rJMFF005G16- GAACCACGGGCTAGGAGGATTTCCATCCCTCGGGATTGGGAGAACGATATCAGGTCTACC
rJMFF026D16- GAACCACGGGCTAGGAGGATTTCCATCCCTCGGGATTGGGAGAACGATATCAGGTCTACC
JMFF026D16+ GAACCACGGGCTAGGAGGATTTCCATCCCTCGGGATTGGGAGAACGATATCAGGTCTACC
JMFF007I01+ GAACCACGGGNTAGGAGGATTTCCATCCCTCGGGATTGGGAGAACGATATCAGGTNTACC
____________________________________________________________
consensus GAACCACGGGCTAGGAGGATTTCCATCCCTCGGGATTGGGAGAACGATATCAGGTCTACC
. : . : . : . : . : . :
rJMFF007I01- ANGAGATAGCATGGAAANGCTCAATATCTTCACTTCTGCTTCCAGAGATTCTCCAACAGC
rJMFF005G16- AGGAGATAGCATGGAAAGGCTCAATATCTTCACTTCTGCTTCCAGAGATTCTCCAACAGC
rJMFF026D16- AGGAGATAGCATGGAAAGGCTCAATATCTTCACTTCTGCTTCCAGAGATTCTCCAACAGC
JMFF026D16+ AGGAGATAGCATGGAAAGGCTCAATATCTTCACTTCTGCTTCCAGAGATTCTCCAACAGC
JMFF048G09+ CCAGAGATTCTCCAACAGC
JMFF007I01+ AGGAGATAGCATGGAAAGGCTCAATATCTTCACTTCTGCTTCCAGAGATTCTCCAACAGC
____________________________________________________________
consensus AGGAGATAGCATGGAAAGGCTCAATATCTTCACTTCTGCTTCCAGAGATTCTCCAACAGC
. : . : . : . : . : . :
rJMFF007I01- ATTGATATCCACACTCCCAAGAAGTTGCTCCTTCCACCTTCTCAAGCTCTCNTCATCCTT
rJMFF005G16- ATTGATATCCACACTCCCAAGAAGTTGCTCCTTCCACCTTCTCAAGCTCTCATCATCCTT
rJMFF026D16- ATTGATATCCACACTCCCAAGAAGTTGCTCCTTCCACCTTCTCAAGCTCTCATCATCCTT
JMFF026D16+ ATTGATATCCACACTCCCAAGAAGTTGCTCCTTCCACCTTCTCAAGCTCTCATCATCCTT
JMFF048G09+ ATTGATATCCACACTCCCAAGAAGTTGCTCCTTCCACCTTCTCAAGCTCTCATCATCCTT
JMFF007I01+ ATTGATATCCACACTCCCAAGAAGTTGCTCCTTCCACCTTCTCAAGCTCTCATCATCCTT
JMFF005G16+ TCTCAAGCTCTCATCATCCTT
____________________________________________________________
consensus ATTGATATCCACACTCCCAAGAAGTTGCTCCTTCCACCTTCTCAAGCTCTCATCATCCTT
. : . : . : . : . : . :
rJMFF007I01- ATCTTT
rJMFF005G16- ATCTTTCTCAAACTGTTCTTTGAGAGTAACTTGAGGCCCCAACTGAATCTTATTTGCAGT
rJMFF026D16- ATCTTTCTCAAACTGTTCTTTGAGAGTAACTTGAGGCCCCAACTGAATCTTATTTGCAGT
JMFF026D16+ ATCTTTCTCAAACTGTTCTTTGAGAGTAACTTGAGGCCCCAACTGAATCTTATTTGCAGT
JMFF048G09+ ATCTTTCTCAAACTGTTCTTTGAGAGTAACTTGAGGCCCCAACTGAATCTTATTTGCAGT
JMFF007I01+ ATCTTTCTCAAACTGTTCTTTGAGAGTAACTTGAGGCCCCAACTGAATCTTATTTGCAGT
JMFF005G16+ ATCTTTCTCAAACTGTTCTTTGAGAGTAACTTGAGGCCCCAACTGAATCTTATTTGCAGT
____________________________________________________________
consensus ATCTTTCTCAAACTGTTCTTTGAGAGTAACTTGAGGCCCCAACTGAATCTTATTTGCAGT
. : . : . : . : . : . :
rJMFF005G16- G
rJMFF026D16- GTCCTCCTCCTCCTCCTCAGT
JMFF026D16+ GTCCTCCTCCTCCTCCTCAGTGGTGCAAAAGGAGCTCTCACTCATCGGCCTCCCTCCACC
JMFF048G09+ GTCCTCCTCCTCCTCCTCAGTGGTGCAAAAGGAGCTCTCACTCATCGGCCTCCCTCCACC
JMFF007I01+ GTCCTCCTCCTCCTCCTCAGTGGTGCAAAAGGAGCTCTCACTCATCGGCCTCCCTCCACC
JMFF005G16+ GTCCTCCTCCTCCTCCTCAGTGGTGCAAAAGGAGCTCTCACTCATCGGCCTCCCTCCACC
____________________________________________________________
consensus GTCCTCCTCCTCCTCCTCAGTGGTGCAAAAGGAGCTCTCACTCATCGGCCTCCCTCCACC
. : . : . : . : . : . :
JMFF026D16+ TCCTTCATTGTCAGTCTCAGCATCTGAATCTGCAACTGCAGTAGCCTCCTTCTTATCCTC
JMFF048G09+ TCCTTCATTGTCAGTCTCAGCATCTGAATCTGCAACTGCAGTAGCCTCCTTCTTATCCTC
JMFF007I01+ TCCTTCATTGTCAGTCTCAGCATCTGAATCTGCAACTGCAGTAGCCTCCTTCTTATCCTC
JMFF005G16+ TCCTTCATTGTCAGTCTCAGCATCTGAATCTGCAACTGCAGTAGCCTCCTTCTTATCCTC
____________________________________________________________
consensus TCCTTCATTGTCAGTCTCAGCATCTGAATCTGCAACTGCAGTAGCCTCCTTCTTATCCTC
. : . : . : . : . : . :
JMFF026D16+ CCCTTTCTTCTCATCAAACCCCATGTTTTCTGAAGCCCCCCGGCAGCCAATCAC
JMFF048G09+ CCCTTTCTTCTCATCAAACCCCATGTTTTCTGAAGCCCCCCGGCAGCCAATCAC
JMFF007I01+ CCCTTTCTTCTCATCAAACCCCATGTTTTCTGAAGCCCCCCGGCAGCCAATCACACCCAC
JMFF005G16+ CCCTTTCTTCTCATCAAACCCCATGTTTTCTGAAGCCCCCCGGCAGCCAATCACACCCAC
____________________________________________________________
consensus CCCTTTCTTCTCATCAAACCCCATGTTTTCTGAAGCCCCCCGGCAGCCAATCACACCCAC
. : . : . : . : . : . :
JMFF007I01+ AGGATAAAAACAAGGCCTCTACTATATATCTGACATGACAAAGCGAACAAAGCTCAA
JMFF005G16+ AGGATAAAAACAAGGCCTCTACTATATATCTGACATGACAAAGCGAACAAAGCTCAAAGC
____________________________________________________________
consensus AGGATAAAAACAAGGCCTCTACTATATATCTGACATGACAAAGCGAACAAAGCTCAAAGC
. : . : . : . : . : . :
JMFF005G16+ CAAATCAAGAATCACGTAAACACACACAATACAGACAGAGAGAAAGAGAGAGAGTTCCTA
____________________________________________________________
consensus CAAATCAAGAATCACGTAAACACACACAATACAGACAGAGAGAAAGAGAGAGAGTTCCTA
. : . : . : . : . : . :
JMFF005G16+ AAAAGAATCAAACTTTATTTAAAGGGATGCAGAATTGGGTGACATAAGAGTTGGTTCTTT
____________________________________________________________
consensus AAAAGAATCAAACTTTATTTAAAGGGATGCAGAATTGGGTGACATAAGAGTTGGTTCTTT