asagaodb

Contig 010143: Sequence
BLAST Hits against nr-aa DB Show

clone	5'-sequence						3'-sequence
clone	Seq.	length	contig	BestHit	Evalue	description	length	contig	BestHit	Evalue	description
JMFF005B04	Sequence	486	010143 (6)	ref\|XP_009776052.1\|	223	PREDICTED: polyadenylate-binding protein 2-like [Nicotiana sylvestris]	763	010143 (6)	ref\|XP_009624759.1\|	306	PREDICTED: polyadenylate-binding protein 2-like [Nicotiana tomentosiformis]
JMSF010J09	Sequence	444	010143 (6)	ref\|XP_009776052.1\|	230	PREDICTED: polyadenylate-binding protein 2-like [Nicotiana sylvestris]	764	010143 (6)	ref\|XP_009624759.1\|	322	PREDICTED: polyadenylate-binding protein 2-like [Nicotiana tomentosiformis]
JMSF052I14	Sequence	688	010143 (6)	ref\|XP_009624759.1\|	318	PREDICTED: polyadenylate-binding protein 2-like [Nicotiana tomentosiformis]	820	010143 (6)	ref\|XP_009624759.1\|	318	PREDICTED: polyadenylate-binding protein 2-like [Nicotiana tomentosiformis]
Alignment

This contig is upended


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rJMFF005B04-                                       GGTTTTTACTCGAAGATGCAACCCAAACAAA
rJMSF010J09-                                                                    AA
rJMSF052I14-                                                                    AA
                      ____________________________________________________________
consensus                                          GGTTTTTACTCGAAGATGCAACCCAAACAAA
 
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rJMFF005B04-          ATGTTGAATGAAGTCACATTACAGCATTAGCCAAGCCACATGAAAGCTCAATGTAAGAAT
rJMSF010J09-          ATGTTGAATGAAGTCACATTACAGCATTAGCCAAGCCACATGAAAGCTCAATGTAAGAAT
rJMSF052I14-          ATGTTGAATGAAGTCACATTACAGCATTAGCCAAGCCACATGAAAGCTCAATGTAAGAAT
                      ____________________________________________________________
consensus             ATGTTGAATGAAGTCACATTACAGCATTAGCCAAGCCACATGAAAGCTCAATGTAAGAAT
 
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rJMFF005B04-          AAACAACACCAGCACACCCTCAGGAGGAGCTTTCACGGGTGGGGTGGGGGTGTGTGCTTG
rJMSF010J09-          AAACAACACCAGCACACCCTCAGGAGGAGCTTTCACGGGTGGGGTGGGGGTGTGTGCTTG
rJMSF052I14-          AAACAACACCAGCACACCCTCAGGAGGAGCTTTCACGGGTGGGGTGGGGGTGTGTGCTTG
                      ____________________________________________________________
consensus             AAACAACACCAGCACACCCTCAGGAGGAGCTTTCACGGGTGGGGTGGGGGTGTGTGCTTG
 
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rJMFF005B04-          ATCTGTCATTTGAAGCATACATTTGTATCTGCAGAATTTGCGGCTCAGAAATAGGGGTTG
rJMSF010J09-          ATCTGTCATTTGAAGCATACATTTGTATCTGCAGAATTTGCGGCTCAGAAATAGGGGTTG
JMSF052I14+                     TGAAGCATACATTTGTATCTGCAGAATTTGCGGTTCAGAAATAGGGGTTG
rJMSF052I14-          ATCTGTCATTTGAAGCATACATTTGTATCTGCAGAATTTGCGGTTCAGAAATAGGGGTTG
                      ____________________________________________________________
consensus             ATCTGTCATTTGAAGCATACATTTGTATCTGCAGAATTTGCGGTTCAGAAATAGGGGTTG
 
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rJMFF005B04-          TATCGCATCGCTGTTCTGAACCTAGGCACCTTCCCATAGCCATAAGGAGTAGGATAG-AA
rJMSF010J09-          TATCGCATCGCTGTTCTGAACCTAGGCACCTTCCCATAGCCATAAGGAGTAGGATAGAAA
JMSF052I14+           TATCGCATCGCTGTTCTGAACCTAGGCACCTTCCCATAGCCATAAGGAGTAGGATAG-AA
rJMSF052I14-          TATCGCATCGCTGTTCTGAACCTAGGCACCTTCCCATAGCCATAAGGAGTAGGATAG-AA
                      ____________________________________________________________
consensus             TATCGCATCGCTGTTCTGAACCTAGGCACCTTCCCATAGCCATAAGGAGTAGGATAG-AA
 
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rJMFF005B04-          AAAAGGGGCAGCTGCATATGGTGTCCTCCCCCGGAACCCCATATAAGGATTGGGACGCCT
rJMSF010J09-          AAAAGGGGCAGCTGCATATGGTGTCCTCCCCCGGAACCCCATATAAGGATTGGGACGCCT
JMSF052I14+           AAAAGGGGCAGCTGCATATGGTGTCCTCCCCCGGAACCCCATATAAGGATTGGGACGCCT
rJMSF052I14-          AAAAGGGGCAGCTGCATATGGTGTCCTCCCCCGGAACCCCATATAAGGATTGGGACGCCT
                      ____________________________________________________________
consensus             AAAAGGGGCAGCTGCATATGGTGTCCTCCCCCGGAACCCCATATAAGGATTGGGACGCCT
 
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rJMFF005B04-          TGCCCGGAACTGCTTCATGCCAGGTATATTAGTTCGCTTTGCTGATACCTTAAGTTGGCG
rJMSF010J09-          TGCCCGGAACTGCTTCATGCCAGGTATATTAGTTCGCTTTGCTGATACCTTAAGTTGGCG
JMSF052I14+           TGCCCGGAACTGCTTCATGCCAGGTATATTAGTTCGCTTTGCTGATACCTTAAGTTGGCG
rJMSF052I14-          TGCCCGGAACTGCTTCATGCCAGGTATATTAGTTCGCTTTGCTGATACCTTAAGTTGGCG
JMFF005B04+                                                                 TTGGCG
                      ____________________________________________________________
consensus             TGCCCGGAACTGCTTCATGCCAGGTATATTAGTTCGCTTTGCTGATACCTTAAGTTGGCG
 
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rJMFF005B04-          GCCATGGAGCTCAGATTCATTGAGAAGAAGAGCCT-CCTGAACAGCTTCAGTTTCAAGAA
rJMSF010J09-          GCCATGGAGCTCAGATTCATTGAGAAGAAGAGCCT-CCTGAACAGCTTCAGTTTCAAGAA
JMSF052I14+           GCCATGGAGCTCAGATTCATTGAGAAGAAGAGCCT-CCTGAACAGCTTCAGTTTCAAGAA
rJMSF052I14-          GCCATGGAGCTCAGATTCATTGAGAAGAAGAGCCT-CCTGAACAGCTTCAGTTTCAAGAA
JMSF010J09+                                 AGAAGAAGAGCCT-CCTGAACAGCTTCAGTTTCAAGAA
JMFF005B04+           GCCATGGAGCTCAGATTCATTGAGAAGAAGAGCCTCCCTGAACAGCTTCAGTTTCAAGAA
                      ____________________________________________________________
consensus             GCCATGGAGCTCAGATTCATTGAGAAGAAGAGCCT-CCTGAACAGCTTCAGTTTCAAGAA
 
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rJMFF005B04-          ATTCAACATATGCATACCCCTTCGGTTGCCCAAACTTGTTAGTCCGAATCGTAACTCTAT
rJMSF010J09-          ATTCAACATATGCATACCCCTTCGGTTGCCCAAACTTGTTAGTCCGAATCGTAACTCTAT
JMSF052I14+           ATTCAACATATGCATACCCCTTCGGTTGCCCAAACTTGTTAGTCCGAATCGTAACTCTAT
rJMSF052I14-          ATTCAACATATGCATACCCCTTCGGTTGCCCAAACTTGTTAGTCCGAATCGTAACTCTAT
JMSF010J09+           ATTCAACATATGCATACCCCTTCGGTTGCCCAAACTTGTTAGTCCGAATCGTAACTCTAT
JMFF005B04+           ATTCAACATATGCATACCCCTTCGGTTGCCCAAACTTGTTAGTCCGAATCGTAACTCTAT
                      ____________________________________________________________
consensus             ATTCAACATATGCATACCCCTTCGGTTGCCCAAACTTGTTAGTCCGAATCGTAACTCTAT
 
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rJMFF005B04-          TTANTGTCCCACATGCCTGAAAATGCTGCTGTACTTCCTCGGGAGTGCACGCGTAATCCA
rJMSF010J09-          TTACTGTCCCACATGCCTGAAAATGCTGCTGTACTTCCTCGGGAGTGCACGCGTAATCCA
JMSF052I14+           TTACTGTCCCACATGCCTGAAAATGCTGCTGTACTTCCTCGGGAGTGCACGCGTAATCCA
rJMSF052I14-          TTACTGTCCCACATGCCTGAAAATGCTGCTGTACTTCCTCGGGAGTGCACGCGTAATCCA
JMSF010J09+           TTACTGTCCCACATGCCTGAAAATGCTGCTGTACTTCCTCGGGAGTGCACGCGTAATCCA
JMFF005B04+           TTACTGTCCCACATGCCTGAAAATGCTGCTGTACTTCCTCGGGAGTGCACGCGTAATCCA
                      ____________________________________________________________
consensus             TTACTGTCCCACATGCCTGAAAATGCTGCTGTACTTCCTCGGGAGTGCACGCGTAATCCA
 
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rJMFF005B04-          CATTCCCAACAAAGACAGAACGAGAATCCACTTCCTCCCTATTAGCCTGGTTTGCAGCAT
rJMSF010J09-          CATTCCCAACAAAGACAGAACGAGAATCCACTTCCTCCCTATTAGCCTGGTTTGCAGCAT
JMSF052I14+           CATTCCCAACAAAGACAGAACGAGAATCCACTTCCTCCCTATTAGCCTGGTTTGCAGCAT
rJMSF052I14-          CATTCCCAACAAAGACAGAACGAGAATCCACTTCCTCCCTATTAGCCTGGTTTGCAGCAT
JMSF010J09+           CATTCCCAACAAAGACAGAACGAGAATCCACTTCCTCCCTATTAGCCTGGTTTGCAGCAT
JMFF005B04+           CATTCCCAACAAAGACAGAACGAGAATCCACTTCCTCCCTATTAGCCTGGTTTGCAGCAT
                      ____________________________________________________________
consensus             CATTCCCAACAAAGACAGAACGAGAATCCACTTCCTCCCTATTAGCCTGGTTTGCAGCAT
 
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rJMFF005B04-          CAGCAGAAGGGTCTTGAACGGCGCCCATTTCTTTCTCAACTTTGGCCTGCATTTCGCGGA
rJMSF010J09-          CAGCAGAAGGGTCTTGAACGGCGCCCATTTCTTTCTCAACTTTGGCCTGCATTTCGCGGA
JMSF052I14+           CAGCAGAAGGGTCTTGAACGGCGCCCATTTCTTTCTCAACTTTGGCCTGCATTTCGCGGA
rJMSF052I14-          CAGCAGAAGGGTCTTGAACGGCGCCCATTTCTTTCTCAACTTTGGCCTGCATTTCGCGGA
JMSF010J09+           CAGCAGAAGGGTCTTGAACGGCGCCCATTTCTTTCTCAACTTTGGCCTGCATTTCGCGGA
JMFF005B04+           CAGCAGAAGGGTCTTGAACGGCGCCCATTTCTTTCTCAACTTTGGCCTGCATTTCGCGGA
                      ____________________________________________________________
consensus             CAGCAGAAGGGTCTTGAACGGCGCCCATTTCTTTCTCAACTTTGGCCTGCATTTCGCGGA
 
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rJMFF005B04-          GAGCAGCCGCCTCGTCTTCCATCTCCTTCAATCTCTTCTTCATTTCATCCAATTCCACGA
rJMSF010J09-          GAGCAGCCGCCTCGTCTTCCATCTCCTTCAATCTCTTCTTCATTTCATCCAATTCCACGA
JMSF052I14+           GAGCAGCCGCCTCGTCTTCCATCTCCTTCAATCTCTTCTTCATTTCATCCAATTCCACGA
rJMSF052I14-          GAGCAGCCGCCTCGTCTTCCATCTCCTTCAATCTCTTCTTCATTTCATCCAATTCCACGA
JMSF010J09+           GAGCAGCCGCCTCGTCTTCCATCTCCTTCAATCTCTTCTTCATTTCATCCAATTCCACGA
JMFF005B04+           GAGCAGCCGCCTCGTCTTCCATCTCCTTCAATCTCTTCTTCATTTCATCCAATTCCACGA
                      ____________________________________________________________
consensus             GAGCAGCCGCCTCGTCTTCCATCTCCTTCAATCTCTTCTTCATTTCATCCAATTCCACGA
 
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rJMFF005B04-          CAGCTCCTCCGCTT                                              
rJMSF010J09-          CAGCTCCTCCGCTTTCCGGCGCAGCCATCTCCACGTCATCGCC                 
JMSF052I14+           CAGCTCCTCCGCTTTCCGGCGCAGCCATCTCCACGTCATCGCCTTCCATCGCCGATTCGC
rJMSF052I14-          CAGCTCCTCCGCTTTCCGGCGCAGCCATCTCCACGTCATCGCCTTCCATCGCCGATTCGC
JMSF010J09+           CAGCTCCTCCGCTTTCCGGCGCAGCCATCTCCACGTCATCGCCTTCCATCGCCGATTCGC
JMFF005B04+           CAGCTCCTCCGCTTTCCGGCGCAGCCATCTCCACGTCATCGCCTTCCATCGCCGATTCGC
                      ____________________________________________________________
consensus             CAGCTCCTCCGCTTTCCGGCGCAGCCATCTCCACGTCATCGCCTTCCATCGCCGATTCGC
 
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JMSF052I14+           CACTTCTCTCGCTGGACCGCTCGGTCACAGGCTAAGATC                     
rJMSF052I14-          CACTTCTCTCGCTGGACCGCTCGGTCACAGGCTAAGATC                     
JMSF010J09+           CACTTCTCTCGCTGGACCGCTCGGTCACAGGCTAAGATC                     
JMFF005B04+           CACTTCTCTCGCTGGACCGCTCGGTCACAGGCTAAGATCGTCTCCTACATAAGAACCTCC
                      ____________________________________________________________
consensus             CACTTCTCTCGCTGGACCGCTCGGTCACAGGCTAAGATCGTCTCCTACATAAGAACCTCC
Contig 010143: SequenceBLAST Hits against nr-aa DB Show

Alignment

Contig 010143: Sequence
BLAST Hits against nr-aa DB Show
