| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001K04 | Sequence | 536 | 010128 (7) | ref|XP_009766349.1| | 2e-15 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico | 756 | 013593 (7) | ref|XP_009766349.1| | 6e-111 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico |
| JMFF002I19 | Sequence | 619 | 010128 (7) | ref|XP_009766349.1| | 4e-46 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico | 785 | 013593 (7) | ref|XP_009766349.1| | 7e-96 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico |
| JMFF006F13 | Sequence | 524 | 010128 (7) | ref|XP_009766349.1| | 1e-56 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico | 742 | 013593 (7) | gb|EYU33796.1| | 2e-64 | hypothetical protein MIMGU_mgv1a006939mg [Erythranthe guttata] |
| JMFS044H05 | Sequence | 627 | 010128 (7) | ref|XP_009766349.1| | 4e-46 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico | |||||
| JMSF008A10 | Sequence | 232 | 010128 (7) | 789 | 013593 (7) | ref|XP_009766349.1| | 4e-103 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico | |||
| JMSF012P20 | Sequence | 273 | 010128 (7) | 756 | 013593 (7) | ref|XP_009766349.1| | 5e-117 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico | |||
| JMSF026B02 | Sequence | 653 | 010128 (7) | ref|XP_009766349.1| | 2e-51 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico | 784 | 013593 (7) | ref|XP_009766349.1| | 3e-101 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Nico |
This contig is upended
. : . : . : . : . : . :
JMFF006F13+ ATTTCCAGAGTAGACTCATCCAAGACCCTAATGGTTCCTTTGAAGAC
JMFS044H05+ GTAGACTCATCCAAGACCCTAATGG-TCCTTTGAAGAC
JMSF026B02+ GTAGACTCATCCAAGACCCTAATGGTTCCTTTGAAGAC
JMFF002I19+ CTTTGAAGAC
____________________________________________________________
consensus ATTTCCAGAGTAGACTCATCCAAGACCCTAATGGTTCCTTTGAAGAC
. : . : . : . : . : . :
JMFF006F13+ ACCATGAGTGGAGTCATACTTGAACATGTATGCCATGTAATTAGCATCAATAAAAGGGTC
JMFS044H05+ ACCATGAGTGGAGTCATACTTGAACATGTATGCCATGTAATTAGCATCAATAAAAGGGTC
JMSF026B02+ ACCATGAGTGGAGTCATACTTGAACATGTATGCCATGTAATTAGCATCAATAAAAGGGTC
JMFF002I19+ ACCATGAGTGGAGTCATACTTGAACATGTATGCCATGTAATTAGCATCAATAAAAGGGTC
____________________________________________________________
consensus ACCATGAGTGGAGTCATACTTGAACATGTATGCCATGTAATTAGCATCAATAAAAGGGTC
. : . : . : . : . : . :
JMFF006F13+ ATTAACTGCAACCACATCAATGTCATCCCTTGACGTTGCAATTNGTAAAACTAACCTTCC
JMFS044H05+ ATTAACTGCAACCACATCAATGTCATCCCTTGACGTTGCAATTCGTAAAACTAACCTTCC
JMSF026B02+ ATTAACTGCAACCACATCAATGTCATCCCTTGACGTTGCAATTCGTAAAACTAACCTTCC
JMFF002I19+ ATTAACTGCAACCACATCAATGTCATCCCTTGACGTTGCAATTCGTAAAACTAACCTTCC
____________________________________________________________
consensus ATTAACTGCAACCACATCAATGTCATCCCTTGACGTTGCAATTCGTAAAACTAACCTTCC
. : . : . : . : . : . :
JMFF006F13+ AATCCTTCCAAACCCATTGATCCCAACCCTTGTNTTCCCAGTAGTTTGTGATTTTGGAAT
JMFS044H05+ AATCCTTCCAAACCCATTGATCCCAACCCTTGTCTTCCCAGTAGTTTGTGATTTTGGAAT
JMSF026B02+ AATCCTTCCAAACCCATTGATCCCAACCCTTGTCTTCCCAGTAGTTTGTGATTTTGGAAT
JMFF002I19+ AATCCTTCCAAACCCATTGATCCCAACCCTTGTCTTCCCAGTAGTTTGTGATTTTGGAAT
JMFF001K04+ CTTCCAAACCCATTGATCCCAACCCTTGTCTTCCCAGTAGTTTGTGATTTTGGAAT
____________________________________________________________
consensus AATCCTTCCAAACCCATTGATCCCAACCCTTGTCTTCCCAGTAGTTTGTGATTTTGGAAT
. : . : . : . : . : . :
JMFF006F13+ TGTTGGAGGTAGTTCGGTGGCTGTAGCTTTAACAGGTTGAATACTGCTGGAACCAGATCC
JMFS044H05+ TGTTGGAGGTAGTTCGGTGGCTGTAGCTTTAACAGGTTGAATACTGCTGGAACCAGATCC
JMSF026B02+ TGTTGGAGGTAGTTCGGTGGCTGTAGCTTTAACAGGTTGAATACTGCTGGAACCAGATCC
JMFF002I19+ TGTTGGAGGTAGTTCGGTGGCTGTAGCTTTAACAGGTTGAATACTGCTGGAACCAGATCC
JMFF001K04+ TGTTGGAGGTAGTTCGGTGGCTGTAGCTTTAACAGGTTGAATACTGCTGGAACCAGATCC
____________________________________________________________
consensus TGTTGGAGGTAGTTCGGTGGCTGTAGCTTTAACAGGTTGAATACTGCTGGAACCAGATCC
. : . : . : . : . : . :
JMFF006F13+ TTGTACGGAAGATGAATGAACATTTGGAAGAGCGGAACCAAAGATGCTTGATTCAAACTT
JMFS044H05+ TTGTACGGAAGATGAATGAACATTTGGAAGAGCGGAACCAAAGATGCTTGATTCAAACTT
JMSF026B02+ TTGTACGGAAGATGAATGAACATTTGGAAGAGCGGAACCAAAGATGCTTGATTCAAACTT
JMFF002I19+ TTGTACGGAAGATGAATGAACATTTGGAAGAGCGGAACCAAAGATGCTTGATTCAAACTT
JMFF001K04+ TTGTACGGAAGATGAATGAACATTTGGAAGAGCGGAACCAAAGATGCTTGATTCAAACTT
____________________________________________________________
consensus TTGTACGGAAGATGAATGAACATTTGGAAGAGCGGAACCAAAGATGCTTGATTCAAACTT
. : . : . : . : . : . :
JMFF006F13+ GACGGAGGTGCAGCCTTGATTGAAGCCAGCCAATGATGCCTGATGGCGATGGGAAGATGA
JMFS044H05+ GACGGAGGTGCAGCCTTGATTGAAGCCAGCCAATGATGCCTGATGGCGATGGGAAGATGA
JMSF026B02+ GACGGAGGTGCAGCCTTGATTGAAGCCAGCCAATGATGCCTGATGGCGATGGGAAGATGA
JMFF002I19+ GACGGAGGTGCAGCCTTGATTGAAGCCAGCCAATGATGCCTGATGGCGATGGGAAGATGA
JMSF012P20+ GCCTGATGGCGATGGGAAGATGA
JMFF001K04+ GACGGAGGTGCAGCCTTGATTGAAGCCAGCCAATGATGCCTGATGGCGATGGGAAGATGA
____________________________________________________________
consensus GACGGAGGTGCAGCCTTGATTGAAGCCAGCCAATGATGCCTGATGGCGATGGGAAGATGA
. : . : . : . : . : . :
JMFF006F13+ ATAAGCGTGTAGAACAGGGGAAGCAGGCACAGATCTGAGGAGAGAAGAGAATCCCATTTT
JMFS044H05+ AGAAGCGTGTAGAACAGGGGAAGCAGGCACAGATCTGAGGAGAGAAGAGAATCCCATTTT
JMSF026B02+ AGAAGCGTGTAGAACAGGGGAAGCAGGCACAGATCTGAGGAGAGAAGAGAATCCCATTTT
JMFF002I19+ AGAAGCGTGTAGAACAGGGGAAGCAGGCACAGATCTGAGGAGAGAAGAGAATCCCATTTT
JMSF012P20+ AGAAGCGTGTAGAACAGGGGAAGCAGGCACAGATCTGAGGAGAGAAGAGAATCCCATTTT
JMSF008A10+ GGAAGCAGGCACAGATCTGAGGAGAGAAGAGAATCCCATTTT
JMFF001K04+ AGAAGCGTGTAGAACAGGGGAAGCAGGCACAGATCTGAGGAGAGAAGAGAATCCCATTTT
____________________________________________________________
consensus AGAAGCGTGTAGAACAGGGGAAGCAGGCACAGATCTGAGGAGAGAAGAGAATCCCATTTT
. : . : . : . : . : . :
JMFF006F13+ TACTATTGCTTGCAAAAACAGTATGACCTCCTCCGCTCAATGATGAGTATCCAATCC
JMFS044H05+ TACTATTGCTTGCAAAAACAGTATGACCTCCTCCGCTCAATGATGAGTATCCAATCCAAA
JMSF026B02+ TACTATTGCTTGCAAAAACAGTATGACCTCCTCCGCTCAATGATGAGTATCCAATCCAAA
JMFF002I19+ TACTATTGCTTGCAAAAACAGTATGACCTCCTCCGCTCAATGATGAGTATCCAATCCAAA
JMSF012P20+ TACTATTGCTTGCAAAAACAGTATGACCTCCTCCGCTCAATGATGAGTATCCAATCCAAA
JMSF008A10+ TACTATTGCTTGCAAAAACAGTATGACCTCCTCCGCTCAATGATGAGTATCCAATCCAAA
JMFF001K04+ TACTATTGCTTGCAAAAACAGTATGACCTCCTCCGCTCAATGATGAGTATCCAATCCAAA
____________________________________________________________
consensus TACTATTGCTTGCAAAAACAGTATGACCTCCTCCGCTCAATGATGAGTATCCAATCCAAA
. : . : . : . : . : . :
JMFS044H05+ TAGATCGATGAACGAGAGATATATATATATGCAAAACCCTAGGAAGATGAGGAAAGGTGG
JMSF026B02+ TAGATCGATGAACGAGAGATATATATATATGCAAAACCCTAGGAAGATGAGGAAAGGTGG
JMFF002I19+ TAGATCGATGAACGAGAGATATATATATATGCAAAACCCTAGGAAGATGAGGAAAGGTGG
JMSF012P20+ TAGATCGATGAACGAGAGATATATATATATGCAAAACCCTAGGAAGATGAGGAAAGGTGG
JMSF008A10+ TAGATCGATGAACGAGAGATATATATATATGCAAAACCCTAGGAAGATGAGGAAAGGTGG
JMFF001K04+ TAGATCGATGAACGAGAGATATATATATATGCAAAACCCTAGGAAGATGAGGAAAGGTGG
____________________________________________________________
consensus TAGATCGATGAACGAGAGATATATATATATGCAAAACCCTAGGAAGATGAGGAAAGGTGG
. : . : . : . : . : . :
JMFS044H05+ TTTGAGATTCTATGTAAAAATTAAAATGGCTCTTGAGATACAGAGGAGGA
JMSF026B02+ TTTGAGATTCTATGTAAAAATTAAAATGGCTCTTGAGATACAGAGGAGGAGGAGACTCTG
JMFF002I19+ TTTGAGATTCTATGTAAAAATTAAAATGGCTCTTGAGATACAGAGGAGGAGGAGACTCTG
JMSF012P20+ TTTGAGATTCTATGTAAAAATTAAAATGGCTCTTGAGATACAGAGGAGGAGGAGACTCTG
JMSF008A10+ TTTGAGATTCTATGTAAAAATTAAAATGGCTCTTGAGATACAGAGGAGGAGGAGACTCTG
JMFF001K04+ TTTGAGATTCTATGTAAAAATTAAAATGGCTCTTGAGATACAGAGGAGGAGGAGACTCTG
____________________________________________________________
consensus TTTGAGATTCTATGTAAAAATTAAAATGGCTCTTGAGATACAGAGGAGGAGGAGACTCTG
. : . : . : . : . : . :
JMSF026B02+ GCAGGCTG
JMFF002I19+ GCAGGCTGC
JMSF012P20+ GCAGGCTGC
JMSF008A10+ GCAGGCTGC
JMFF001K04+ GCAGGCTGCAGGCAGGCACACCGTCCTTCCCTGCTTTTTAAATTGCGTAAATTGAGCGCT
____________________________________________________________
consensus GCAGGCTGCAGGCAGGCACACCGTCCTTCCCTGCTTTTTAAATTGCGTAAATTGAGCGCT