Contig 010114:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF052G22Sequence635010114 (2)ref|XP_008461190.1|4e-79PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Cucumis melo]868010114 (2)ref|XP_003631919.1|2e-89PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Vitis vinifera] emb|CAN60270.1

Alignment

This contig is upended


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JMSF052G22-                       GACCCGATTTAATTTCCGATAGGGTTTAAAAACATCCTCTGTAAAACC
                      ____________________________________________________________
consensus                         GACCCGATTTAATTTCCGATAGGGTTTAAAAACATCCTCTGTAAAACC
 
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JMSF052G22-           TCCCAAATCGAAATCGAATTCAACCTAGGGTTTCCATTCCTCTCCGTCAGCCATGGCTCG
                      ____________________________________________________________
consensus             TCCCAAATCGAAATCGAATTCAACCTAGGGTTTCCATTCCTCTCCGTCAGCCATGGCTCG
 
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JMSF052G22-           TAACGAGGAGAAAGCGCAGTCGATGCTCAATCGGTTCATCGCCATGAAGGAGGATGAGAA
                      ____________________________________________________________
consensus             TAACGAGGAGAAAGCGCAGTCGATGCTCAATCGGTTCATCGCCATGAAGGAGGATGAGAA
 
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JMSF052G22-           GAAGAAGCCGAAGGATCGCCGCCCCTACCTGGCGTCGGAGTGTAGAGACCTTGCCGACGC
rJMSF052G22+                                          CGTCGGAGTGTAGAGACCTTGCCGACGC
                      ____________________________________________________________
consensus             GAAGAAGCCGAAGGATCGCCGCCCCTACCTGGCGTCGGAGTGTAGAGACCTTGCCGACGC
 
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JMSF052G22-           GGACAAGTGGCGGCAGCAAATCATGCGGGAGATTGGCCGGAAAGTTGCGGAGATCCAGAA
rJMSF052G22+          GGACAAGTGGCGGCAGCAANTCATGCGGGAGATTGGCCGGAAAGTTGCGGAGATCCAGAA
                      ____________________________________________________________
consensus             GGACAAGTGGCGGCAGCAAATCATGCGGGAGATTGGCCGGAAAGTTGCGGAGATCCAGAA
 
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JMSF052G22-           CGAGGGTCTCGGCGAACATCGACTTCGTGACCTCAACGACGAGATTAATAAGCTCATACG
rJMSF052G22+          CGAGGGTCTCGGCGAACATCGACTTCGTGACCTCAACGACGAGATTAATAAGCTCATACG
                      ____________________________________________________________
consensus             CGAGGGTCTCGGCGAACATCGACTTCGTGACCTCAACGACGAGATTAATAAGCTCATACG
 
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JMSF052G22-           TGAGAAGGGCCATTGGGAAAGACGGATAGTTGAGCTCGGCGGGCCGAATCACGCCAAGTA
rJMSF052G22+          TGAGAAGGGCCATTGGGAAAGACGGATAGTTGAGCTCGGCGGGCCGAATCACGCCAAGTA
                      ____________________________________________________________
consensus             TGAGAAGGGCCATTGGGAAAGACGGATAGTTGAGCTCGGCGGGCCGAATCACGCCAAGTA
 
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JMSF052G22-           TTCCGCAAAAATGACGGATTTGGAAGGCAATATTGTGGATGTTCCCAATCCAGGTGGCCG
rJMSF052G22+          TTCCGCAAAAATGACGGATTTGGAAGGCAATATTGTGGATGTTCCCAATCCAGGTGGCCG
                      ____________________________________________________________
consensus             TTCCGCAAAAATGACGGATTTGGAAGGCAATATTGTGGATGTTCCCAATCCAGGTGGCCG
 
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JMSF052G22-           TGGCCCGGGGTACAGATACTTCGGCGCCGCCNAGAAGTTGCCTGGAGTTCGAGAGTTGTT
rJMSF052G22+          TGGCCCGGGGTACAGATACTTCGGCGCCGCCAAGAAGTTGCCTGGAGTTCGAGAGTTGTT
                      ____________________________________________________________
consensus             TGGCCCGGGGTACAGATACTTCGGCGCCGCCAAGAAGTTGCCTGGAGTTCGAGAGTTGTT
 
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JMSF052G22-           TGAGAAGCCTCCCGAGCTGCGGAAAAGGAGAACGAGGTATGATATATACNAGAGGATTGA
rJMSF052G22+          TGAGAAGCCTCCCGAGCTGCGGAAAAGGAGAACGAGGTATGATATATACAAGAGGATTGA
                      ____________________________________________________________
consensus             TGAGAAGCCTCCCGAGCTGCGGAAAAGGAGAACGAGGTATGATATATACAAGAGGATTGA
 
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JMSF052G22-           TGCAAGTTACTACGGTTGTAGAGATGATGAAGACGGTATATTGGAGA             
rJMSF052G22+          TGCAAGTTACTACGGTTGTAGAGATGATGAAGACGGTATATTGGAGAAGTTGGAAGGGGC
                      ____________________________________________________________
consensus             TGCAAGTTACTACGGTTGTAGAGATGATGAAGACGGTATATTGGAGAAGTTGGAAGGGGC
 
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rJMSF052G22+          AGCTGAGAAGAGGATGAGGACTGCTGCACTAAAAGAGTGGATGGAGATGGAGGAGATAAA
                      ____________________________________________________________
consensus             AGCTGAGAAGAGGATGAGGACTGCTGCACTAAAAGAGTGGATGGAGATGGAGGAGATAAA
 
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rJMSF052G22+          GAAAGAAGCAAGAGAAGGAAAAGGAAAAGGAATTTGTGGTGCATGTTCCACTGCCGGATC
                      ____________________________________________________________
consensus             GAAAGAAGCAAGAGAAGGAAAAGGAAAAGGAATTTGTGGTGCATGTTCCACTGCCGGATC
 
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rJMSF052G22+          AGAAGGAGATTGAAAGAATGGTGTTAGAGAAGAAGAAGATGGATCTCTTGAGTAAATACG
                      ____________________________________________________________
consensus             AGAAGGAGATTGAAAGAATGGTGTTAGAGAAGAAGAAGATGGATCTCTTGAGTAAATACG
 
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rJMSF052G22+          CCAGCGAAGATTTGGTTGAAGAGCAGACTGAAGCAAAGGCCATGCTTAACATTCAGAGAT
                      ____________________________________________________________
consensus             CCAGCGAAGATTTGGTTGAAGAGCAGACTGAAGCAAAGGCCATGCTTAACATTCAGAGAT
 
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rJMSF052G22+          AAATGATTGATGCACTTTAGGCTTGGTTAATGCTTAAAATTCAGCAACAGATGATGAATT
                      ____________________________________________________________
consensus             AAATGATTGATGCACTTTAGGCTTGGTTAATGCTTAAAATTCAGCAACAGATGATGAATT
 
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rJMSF052G22+          TTTGTCTTTTAACTAACATTTCCTGATTGTGCATCTTGCAGCCTCTCCATTGTAAATCAA
                      ____________________________________________________________
consensus             TTTGTCTTTTAACTAACATTTCCTGATTGTGCATCTTGCAGCCTCTCCATTGTAAATCAA
 
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rJMSF052G22+          AGATTTCCCTGTGTCCCCCCTAGAGAGAGTATTCTCTTTTATGTTGTACGTCGAAGGGCT
                      ____________________________________________________________
consensus             AGATTTCCCTGTGTCCCCCCTAGAGAGAGTATTCTCTTTTATGTTGTACGTCGAAGGGCT