Contig 010113:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024A10Sequence690003677 (3)emb|CDP06846.1|1e-38unnamed protein product [Coffea canephora]772010113 (2)ref|XP_009798953.1|3e-49PREDICTED: poly(rC)-binding protein 1 [Nicotiana sylvestris] ref|XP_009798954.1|
JMSF052F23Sequence616003677 (3)gb|EYU26865.1|2e-21hypothetical protein MIMGU_mgv1a004357mg [Erythranthe guttata]884010113 (2)ref|XP_011087393.1|3e-58PREDICTED: poly(rC)-binding protein 1 [Sesamum indicum] ref|XP_011087394.1| PRED

Alignment

This contig is upended


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rJMSF052F23+                          CCTGTCGAACATGTACCTCCCCCAGTCATGGGGTCCTCCGCCTC
                      ____________________________________________________________
consensus                             CCTGTCGAACATGTACCTCCCCCAGTCATGGGGTCCTCCGCCTC
 
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rJMSF052F23+          AAGCTTATCATCCAAATGCTGTTGGGGGTCCTGGATATGGTTCTAGTCCTCATTTTATGC
                      ____________________________________________________________
consensus             AAGCTTATCATCCAAATGCTGTTGGGGGTCCTGGATATGGTTCTAGTCCTCATTTTATGC
 
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rJMSF024A10+                 CAGGCAACGTGATAATTANTATCCTCCACCTGATATGCCACCTCCAGTGGAAA
rJMSF052F23+          CACCTCCCAGGCAACGTGATAATTATTATCCTCCACCTGATATGCCACCTCCAGTGGAAA
                      ____________________________________________________________
consensus             CACCTCCCAGGCAACGTGATAATTATTATCCTCCACCTGATATGCCACCTCCAGTGGAAA
 
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rJMSF024A10+          GACCTCCTCATCAGGGTATATCTGCCTATGGAAGAGAAGCTCCAATGACAGTTCATGCAC
rJMSF052F23+          GACCTCCTCATCAGGGTATATCTGCCTATGGAAGAGAAGCTCCAATGACAGTTCATGCAC
                      ____________________________________________________________
consensus             GACCTCCTCATCAGGGTATATCTGCCTATGGAAGAGAAGCTCCAATGACAGTTCATGCAC
 
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rJMSF024A10+          CGTCCAACAACCAGTCAGGATCAACCGTAATTACTCAGATCACACAGCAAATGCAAATCC
rJMSF052F23+          CGTCCAACAACCAGTCAGGATCAACCGTAATTACTCAGATCACACAGCAAATGCAAATCC
                      ____________________________________________________________
consensus             CGTCCAACAACCAGTCAGGATCAACCGTAATTACTCAGATCACACAGCAAATGCAAATCC
 
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rJMSF024A10+          CACTGTCTTATGCTGATGCCGTTATTGGGACAAATGGTTCAAGTATAAGTTACATTCGGA
rJMSF052F23+          CACTGTCTTATGCTGATGCCGTTATTGGGACAAATGGTTCAAGTATAAGTTACATTCGGA
                      ____________________________________________________________
consensus             CACTGTCTTATGCTGATGCCGTTATTGGGACAAATGGTTCAAGTATAAGTTACATTCGGA
 
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rJMSF024A10+          GGGTCAGTGGTGCTACTGTTACCATACAGGAAGCAAGGGGAGTTCCTGGGGAGATGACAG
rJMSF052F23+          GGGTCAGTGGTGCTACTGTTACCATACAGGAAGCAAGGGGAGTTCCTGGGGGGATGACAG
                      ____________________________________________________________
consensus             GGGTCAGTGGTGCTACTGTTACCATACAGGAAGCAAGGGGAGTTCCTGGGGGGATGACAG
 
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rJMSF024A10+          TTGAGATAAGTGGGACTGCTTCTCAAGTTCAGACTGCACAGCAGTTGATACAAAATTTTA
rJMSF052F23+          TTGAGATAAGTGGGACTGCTTCTCAAGTTCAGACTGCACAGCAGTTGATACAAAATTTTA
                      ____________________________________________________________
consensus             TTGAGATAAGTGGGACTGCTTCTCAAGTTCAGACTGCACAGCAGTTGATACAAAATTTTA
 
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rJMSF024A10+          TGGCGGATGCTGCCGCTGCTCCACAGAATCAAACAGCTCCACTTGCTGATCAAGGCTACA
rJMSF052F23+          TGGCGGATGCTGCGGCTGCTCCACAGAATCAAACAGCTCCACTTGCTGATCAAGGCTACA
                      ____________________________________________________________
consensus             TGGCGGATGCTGCGGCTGCTCCACAGAATCAAACAGCTCCACTTGCTGATCAAGGCTACA
 
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rJMSF024A10+          GTGCTTATGCACCCCCGGGATCGATGTACTCGTCAGCCCCACAAAACACAGGTATTCCTG
rJMSF052F23+          GTGCTTATGCACCCCCGGGATCGATGTACTCGTCAGCCCCACAAAACACAGGTATTCCTG
                      ____________________________________________________________
consensus             GTGCTTATGCACCCCCGGGATCGATGTACTCGTCAGCCCCACAAAACACAGGTATTCCTG
 
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rJMSF024A10+          GGCAAACTGGGGGCTACAGTTCAGTGTATGGTTCCAACTATGGCTATTAATCAGCATCAT
rJMSF052F23+          GGCAAACTGGGGGCTACAGTTCAGTGTATGGTTCCAACTATGGCTATTAATCAGCATCAT
                      ____________________________________________________________
consensus             GGCAAACTGGGGGCTACAGTTCAGTGTATGGTTCCAACTATGGCTATTAATCAGCATCAT
 
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rJMSF024A10+          GAGAAACTTGAAATTATTGATATCAGCTTTTTCCATTCTTTCCAACCTGTTATCTTTTTT
rJMSF052F23+          GAGAAACTTGAAATTATTGATATCAGCTTTTTCCATTCTTTCCAACCTGTTATCTTTTTT
                      ____________________________________________________________
consensus             GAGAAACTTGAAATTATTGATATCAGCTTTTTCCATTCTTTCCAACCTGTTATCTTTTTT
 
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rJMSF024A10+          ATTTATTTCTTTTTTATTTGGGGGTATAAAAAACCAAATAATCCCTAAGAAATTTGGCTG
rJMSF052F23+          ATTTATTTCTTTTTTATTTGGGGGTATAAAAAACCAAATAATCCCTAAGAAATTTGGCTG
                      ____________________________________________________________
consensus             ATTTATTTCTTTTTTATTTGGGGGTATAAAAAACCAAATAATCCCTAAGAAATTTGGCTG
 
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rJMSF024A10+          ATATCTGTTATTGTACTAGTAATTAGGCCTAGAAACAAATATCAAATTGTACAATAGGTG
rJMSF052F23+          ATATCTGTTATTGTACTAGTAATTAGGCCTAGAAACAAATATCAAATTGTACAATAGGTG
                      ____________________________________________________________
consensus             ATATCTGTTATTGTACTAGTAATTAGGCCTAGAAACAAATATCAAATTGTACAATAGGTG
 
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rJMSF024A10+          TATTGTACCGTTTAGCTCTTGGCAACATTGAACCTAACCTTACCTTGTCTGTCT      
rJMSF052F23+          TATTGTACCGTTTAGCTCTTGGCAACATTGAACCTAACCTTACCTTGTCTGTCTTGCTGT
                      ____________________________________________________________
consensus             TATTGTACCGTTTAGCTCTTGGCAACATTGAACCTAACCTTACCTTGTCTGTCTTGCTGT