| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF038P24 | Sequence | 765 | 010112 (8) | ref|XP_009788488.1| | 4e-93 | PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Nicotiana syl | |||||
| JMSF044G17 | Sequence | 779 | 010112 (8) | ref|XP_009788488.1| | 4e-147 | PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Nicotiana syl | 775 | 010112 (8) | ref|XP_009594138.1| | 6e-56 | PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Nicotiana tom |
| JMSF049N04 | Sequence | 690 | 010112 (8) | ref|XP_009788488.1| | 1e-124 | PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Nicotiana syl | 729 | 010112 (8) | ref|XP_009788488.1| | 1e-89 | PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Nicotiana syl |
| JMSF050N04 | Sequence | 253 | 010112 (8) | ref|XP_009594138.1| | 2e-32 | PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Nicotiana tom | |||||
| JMSF052D03 | Sequence | 661 | 010112 (8) | ref|XP_009788488.1| | 6e-118 | PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Nicotiana syl | 932 | 010112 (8) | ref|XP_009788488.1| | 3e-68 | PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Nicotiana syl |
This contig is upended
. : . : . : . : . : . :
JMSF049N04- AAGGCAATACCAGAAAACGCTCACCAAAATGGCGTCGTTCATACA
JMSF044G17- GGAATCAAGGCAATACCAGAAAACGCTCACCAAAATGGCGTCGTTCATACA
____________________________________________________________
consensus GGAATCAAGGCAATACCAGAAAACGCTCACCAAAATGGCGTCGTTCATACA
. : . : . : . : . : . :
JMSF049N04- GAGATTCTCGTCGAAGACGAAGAACATTGGGAAGAGGTCTACTAAGAAGTACTTGGAGGA
JMSF044G17- GAGATTCTCGTCGAAGACGAAGAACATTGGGAAGAGGTCTACTAAGAAGTACTTGGAGGA
____________________________________________________________
consensus GAGATTCTCGTCGAAGACGAAGAACATTGGGAAGAGGTCTACTAAGAAGTACTTGGAGGA
. : . : . : . : . : . :
JMSF049N04- AGCGCTTTACAGGAAGCTACTCAAGGAAGGAGGACTTGAGAACAGTGCCGGGAAAAATCT
JMSF044G17- AGCGCTTTACAGGAAGCTACTCAAGGAAGGAGGACTTGAGAACAGTGCCGGGAAAAATCT
____________________________________________________________
consensus AGCGCTTTACAGGAAGCTACTCAAGGAAGGAGGACTTGAGAACAGTGCCGGGAAAAATCT
. : . : . : . : . : . :
JMSF049N04- GAACGAGTTCTTGAAATCTCACAAAAGCGCGTATAAATGGGAGGTCGGCCGCTCAGTCAA
JMSF044G17- GAACGAGTTCTTGAAATCTCACAAAAGCGCGTATAAATGGGAGGTCGGCCGCTCAGTCAA
____________________________________________________________
consensus GAACGAGTTCTTGAAATCTCACAAAAGCGCGTATAAATGGGAGGTCGGCCGCTCAGTCAA
. : . : . : . : . : . :
JMSF049N04- GCTCCTCCGGCAACGCAAGCTCTATTCCCCGGCCATCAAGTTATCGGAAACAATGGAGAA
JMSF044G17- GCTCCTCCGGCAACGCAAGCTCTATTCCCCGGCCATCAAGTTATCGGAAACAATGGAGAA
____________________________________________________________
consensus GCTCCTCCGGCAACGCAAGCTCTATTCCCCGGCCATCAAGTTATCGGAAACAATGGAGAA
. : . : . : . : . : . :
JMSF049N04- AAGAGGCATGAACAAGACTACCAGTGATCAAGGTATACATGTAGATCTTGTTGCAAAAAG
JMSF044G17- AAGAGGCATGAACAAGACTACCAGTGATCAAGGTATACATGTAGATCTTGTTGCAAAAAG
____________________________________________________________
consensus AAGAGGCATGAACAAGACTACCAGTGATCAAGGTATACATGTAGATCTTGTTGCAAAAAG
. : . : . : . : . : . :
JMSF049N04- TAAAGGCATTGCTGCAGCAGAGGCTTATTTTATAAATCTTCCAGAGACATCAAAGAATCA
JMSF044G17- TAAAGGCATTGCTGCAGCAGAGGCTTATTTTATAAATCTTCCAGAGACATCAAAGAATCA
____________________________________________________________
consensus TAAAGGCATTGCTGCAGCAGAGGCTTATTTTATAAATCTTCCAGAGACATCAAAGAATCA
. : . : . : . : . : . :
JMSF049N04- CTTCACTTATGGTGCTCTTCTGAACTGTTACTGCAAGGAATTAATGACTGAGAAAGCAGA
JMSF044G17- CTTCACTTATGGTGCTCTTCTGAACTGTTACTGCAAGGAATTAATGACTGAGAAAGCAGA
JMSF052D03- GCAGA
____________________________________________________________
consensus CTTCACTTATGGTGCTCTTCTGAACTGTTACTGCAAGGAATTAATGACTGAGAAAGCAGA
. : . : . : . : . : . :
JMSF049N04- GGCCCTAATTGAGAAAATGAAAGAACTGAATTTAACGTTAACTTCTATGCCTTACAACAG
JMSF044G17- GGCCCTAATTGAGAAAATGAAAGAACTGAATTTAACGTTAACTTCTATGCCTTACAACAG
JMSF052D03- GGCCCTAATTGAGAAAATGAAAGAACTGAATTTAACGTTAACTTCTATGCCTTACAACAG
____________________________________________________________
consensus GGCCCTAATTGAGAAAATGAAAGAACTGAATTTAACGTTAACTTCTATGCCTTACAACAG
. : . : . : . : . : . :
JMSF049N04- CTTGATGACTCTGTATACAAGAACAGGTCAGCCTGAAAAAATTCCAGCAATCATTCAAGA
JMSF044G17- CTTGATGACTCTGTATACAAGAACAGGTCAGCCTGAAAAAATTCCAGCAATCATTCAAGA
JMSF052D03- CTTGATGACTCTGTATACAAGAACAGGTCAGCCTGAAAAAATTCCAGCAATCATTCAAGA
____________________________________________________________
consensus CTTGATGACTCTGTATACAAGAACAGGTCAGCCTGAAAAAATTCCAGCAATCATTCAAGA
. : . : . : . : . : . :
JMSF049N04- AATAAAGGAGTGTGACATTATGCCGGATTCTTTCACCTATAATATCTGGATGANGGCTCT
JMSF044G17- AATAAAGGAGTGTGACATTATGCCGGATTCTTTCACCTATAATATCTGGATGAGGGCTCT
JMSF052D03- AATAAAGGAGTGTGACATTATGCCGGATTCTTTCACCTATAATATCTGGATGAGGGCTCT
____________________________________________________________
consensus AATAAAGGAGTGTGACATTATGCCGGATTCTTTCACCTATAATATCTGGATGAGGGCTCT
. : . : . : . : . : . :
JMSF049N04- TGCTGCACTAGGTGATATATCTGGTGTTGAGAGGGTTATTGATG
JMSF044G17- TGCTGCACTAGGTGATATATCTGGTGTTGAGAGGGTTATTGATGAGATGAAAAGGGATGG
JMSF052D03- TGCTGCACTAGGTGATATATCTGGTGTTGAGAGGGTTATTGATGAGATGAAAAGGGATGG
____________________________________________________________
consensus TGCTGCACTAGGTGATATATCTGGTGTTGAGAGGGTTATTGATGAGATGAAAAGGGATGG
. : . : . : . : . : . :
JMSF044G17- CCGAGTTGCTGAAGATTGGACTACTTACAGCAATTTGGCATCGATTTATGCCGATGCTGG
JMSF052D03- CCGAGTTGCTGAAGATTGGACTACTTACAGCAATTTGGCATCGATTTATGCCGATGCTGG
____________________________________________________________
consensus CCGAGTTGCTGAAGATTGGACTACTTACAGCAATTTGGCATCGATTTATGCCGATGCTGG
. : . : . : . : . : . :
JMSF044G17- TTTATCAG
JMSF052D03- TTTATCAGACAAGGCTGAGAAGGCACTTAAGGAGTTGGAGAAGAAAAATACTCCCAGAAA
____________________________________________________________
consensus TTTATCAGACAAGGCTGAGAAGGCACTTAAGGAGTTGGAGAAGAAAAATACTCCCAGAAA
. : . : . : . : . : . :
JMSF052D03- TCTTACTGCCTACCAGTTCCTCATCACACTGTATGGACGGATCGGAAACTTGGTTGAAGT
____________________________________________________________
consensus TCTTACTGCCTACCAGTTCCTCATCACACTGTATGGACGGATCGGAAACTTGGTTGAAGT
. : . : . : . : . : . :
JMSF052D03- ATATCGCATATGGCGTTCCTTAAGGCTTGCTTTTCCCAAAACTGCAAATATAAGTTATCT
rJMSF049N04+ AAATATAAGTTATCT
rJMFF038P24+ AAATATAAGTTATCT
rJMSF052D03+ AAATATAAGTTATCT
____________________________________________________________
consensus ATATCGCATATGGCGTTCCTTAAGGCTTGCTTTTCCCAAAACTGCAAATATAAGTTATCT
. : . : . : . : . : . :
JMSF052D03- CAATATGATTCAGGTATTAGTAAACTTGAATGATATGCCAGGTGCTGAGAAGTGTTTCAA
rJMSF050N04+ TCA
rJMSF049N04+ CAATATGATTCAGGTATTAGTAAACTTGAATGATATGCCAGGTGCTGAGAAGTGTTTCAA
rJMFF038P24+ CAATATGATTCAGGTATTAGTAAACTTGAATGATATGCCAGGTGCTGAGAAGTGTTTCAA
rJMSF052D03+ CAATATGATTCAGGTATTAGTAAACTTGAATGATATGCCAGGTGCTGAGAAGTGTTTCAA
____________________________________________________________
consensus CAATATGATTCAGGTATTAGTAAACTTGAATGATATGCCAGGTGCTGAGAAGTGTTTCAA
. : . : . : . : . : . :
JMSF052D03- -GGAGTGGGAGTCAGGACAAACTACTTATGACATTCGTGTTGCAAATGCCCTCATAGGAG
rJMSF050N04+ AGGAGTGGGAGTCANGACAAACTACTTATGACATTCGTGTTGCAAATGCCCTCATNGGAG
rJMSF049N04+ -GGAGTGGGAGTCAGGACAAACTACTTATGACATTCGTGTTGCAAATGCCCTCATAGGAG
rJMFF038P24+ -GGAGTGGGAGTCAGGACAAACTACTTATGACATTCGTGTTGCAAATGCCCTCATAGGAG
rJMSF044G17+ TCATAGGAG
rJMSF052D03+ NGGAGTGGGAGTCAGGACAAACTACTTATGACATTCGTGTTGCAAATGCCCTCATAGGAG
____________________________________________________________
consensus -GGAGTGGGAGTCAGGACAAACTACTTATGACATTCGTGTTGCAAATGCCCTCATAGGAG
. : . : . : . : . : . :
JMSF052D03- CTTATGCTAAA-CAAGGATTATTGAAAAAGGCTAAA-GAGCTCAGAAAACGGGCACAGA
rJMSF050N04+ CTTATNCTAAG-CAAGGATTATTGAAAACGGCNANA-GAGCTCAGAAAACGGGCACAGAG
rJMSF049N04+ CTTATGCTAAA-CAAGGATTATTGAAAAAGGCTAAA-GAGCTCAGAAAACGGGCACAGAG
rJMFF038P24+ CTTATGCTAAA-CAAGGATTATTGAAAAAGGCTAAA-GAGCTCAGAAAACGGGCACAGAG
rJMSF044G17+ CTTATGCTAAACCAAGGATTATTGAAAAAGGCTAAAGGAGCTCAGAAAACGGGCACAGAG
rJMSF052D03+ CTTATGCTAAA-CAAGGATTATTGAAAAAGGCTAAA-GAGCTCAGAAAACGGGCACAGAG
____________________________________________________________
consensus CTTATGCTAAA-CAAGGATTATTGAAAAAGGCTAAA-GAGCTCAGAAAACGGGCACAGAG
. : . : . : . : . : . :
rJMSF050N04+ GAGTGGAGCTAAGCCTAATGCGAAAACATGGGAAATTTTTCNGGATTATTATCTGAAAAA
rJMSF049N04+ GAGTGGAGCTAAGCCTAATGCGAAAACATGGGAAATTTTTCTGGATTATTATCTGAAAAA
rJMFF038P24+ GAGTGGAGCTAAGCCTAATGCGAAAACATGGGAAATTTTTCTGGATTATTATCTGAAAAA
rJMSF044G17+ GAGTGGAGCTAAGCCTAATGCGAAAACATGGGAAATTTTTCTGGATTATTATCTGAAAAA
rJMSF052D03+ GAGTGGAGCTAAGCCTAATGCGAAAACATGGGAAATTTTTCTGGATTATTATCTGAAAAA
____________________________________________________________
consensus GAGTGGAGCTAAGCCTAATGCGAAAACATGGGAAATTTTTCTGGATTATTATCTGAAAAA
. : . : . : . : . : . :
rJMSF050N04+ CGGGGAGATTTCTTCAGCAGTCGNTTGTATTGAGAAAGCAATTACAACTGGTNGAGGGGA
rJMSF049N04+ CGGGGAGATTTCTTCAGCAGTCGATTGTATTGAGAAAGCAATTACAACTGGTAGAGGGGA
rJMFF038P24+ CGGGGAGATTTCTTCAGCAGTCGATTGTATTGAGAAAGCAATTACAACTGGTAGAGGGGA
rJMSF044G17+ CGGGGAGATTTCTTCAGCAGTCGATTGTATTGAGAAAGCAATTACAACTGGTAGAGGGGA
rJMSF052D03+ CGGGGAGATTTCTTCAGCAGTCGATTGTATTGAGAAAGCAATTACAACTGGTAGAGGGGA
____________________________________________________________
consensus CGGGGAGATTTCTTCAGCAGTCGATTGTATTGAGAAAGCAATTACAACTGGTAGAGGGGA
. : . : . : . : . : . :
rJMSF050N04+ TGGTCAGAAATG
rJMSF049N04+ TGGTCAGAAATGGGTTCCATCACCCGTCATTGTTGGGGAATTGATTAGACACTTTGAAAC
rJMFF038P24+ TGGTCAGAAATGGGTTCCATCACCCGTCATTGTTGGGGAATTGATGAGACACTTTGAAAC
rJMSF044G17+ TGGTCAGAAATGGGTTCCATCACCCGTCATTGTTGGGGAATTGATGAGACACTTTGAAAC
rJMSF052D03+ TGGTCAGAAATGGGTTCCATCACCCGTCATTGTTGGGGAATTGATGAGACACTTTGAAAC
____________________________________________________________
consensus TGGTCAGAAATGGGTTCCATCACCCGTCATTGTTGGGGAATTGATGAGACACTTTGAAAC
. : . : . : . : . : . :
rJMSF049N04+ AAAGAAAGATGTTGAGGGTGCAGAACGTGTTCTGGGAAATTTGAAGAAATCTGAAGATCA
rJMFF038P24+ AAAGAAAGATGTTGAGGGTGCAGAACGTGTTCTGGGAAATTTGAAGAAATCTGAAGATCA
rJMSF044G17+ AAAGAAAGATGTTGAGGGTGCAGAACGTGTTCTGGGAAATTTGAAGAAATCTGAAGATCA
rJMSF052D03+ AAAGAAAGATGTTGAGGGTGCAGAACGTGTTCTGGGAAATTTGAAGAAATCTGAAGATCA
____________________________________________________________
consensus AAAGAAAGATGTTGAGGGTGCAGAACGTGTTCTGGGAAATTTGAAGAAATCTGAAGATCA
. : . : . : . : . : . :
rJMSF049N04+ TTTGGGGGCCGAGCTACTTGAATCATTGATAAGAACTTACGCAGCTGCTGGGAAAACATC
rJMFF038P24+ TTTGGGGGCCGAGCTACTTGAATCATTGATAAGAACTTACGCAGCTGCTGGGAAAACATC
rJMSF044G17+ TTTGGGGGCCGAGCTACTTGAATCATTGATAAGAACTTACGCAGCTGCTGGGAAAACATC
rJMSF052D03+ TTTGGGGGCCGAGCTACTTGAATCATTGATAAGAACTTACGCAGCTGCTGGGAAAACATC
____________________________________________________________
consensus TTTGGGGGCCGAGCTACTTGAATCATTGATAAGAACTTACGCAGCTGCTGGGAAAACATC
. : . : . : . : . : . :
rJMSF049N04+ TACAGTCATGCGTAGGCGCGTTAAAATGGAGAACGCAGAGCTGAGTGAGGAAGCCAAGAA
rJMFF038P24+ TACAGTCATGCGTAGGCGCGTTAAAATGGAGAACGCAGAGCTGAGTGAGGAAGCCAAGAA
rJMSF044G17+ TACAGTCATGCGTAGGCGCGTTAAAATGGAGAACGCAGAGCTGAGTGAGGAAGCCAAGAA
rJMSF052D03+ TACAGTCATGCGTAGGCGCGTTAAAATGGAGAACGCAGAGCTGAGTGAGGAAGCCAAGAA
____________________________________________________________
consensus TACAGTCATGCGTAGGCGCGTTAAAATGGAGAACGCAGAGCTGAGTGAGGAAGCCAAGAA
. : . : . : . : . : . :
rJMSF049N04+ ATTGTTGGACGTCATTAGTGCGGAGTAACATTCATACAATACTCTGTTCAATCTTGATTT
rJMFF038P24+ ATTGTTGGACGTCATTAGTGCGGAGTAACATTCATACAATACTCTGTTCAATCTTGATTT
rJMSF044G17+ ATTGTTGGACGTCATTAGTGCGGAGTAACATTCATACAATACTCTGTTCAATCTTGATTT
rJMSF052D03+ ATTGTTGGACGTCATTAGTGCGGAGTAACATTCATACAATACTCTGTTCAATCTTGATTT
____________________________________________________________
consensus ATTGTTGGACGTCATTAGTGCGGAGTAACATTCATACAATACTCTGTTCAATCTTGATTT
. : . : . : . : . : . :
rJMSF049N04+ GAAGAGCCATCATAATCCTGATATTACAGCCTCAGGTGATGAATTTTATGTAGTTTGTTA
rJMFF038P24+ GAAGAGCCATCATAATCCTGATATTACAGCCTCAGGTGATGAATTTTATGTAGTTTGTTA
rJMSF044G17+ GAAGAGCCATCATAATCCTGATATTACAGCCTCAGGTGATGAATTTTATGTAGTTTGTTA
rJMSF052D03+ GAAGAGCCATCATAATCCTGATATTACAGCCTCAGGTGATGAATTTTATGTAGTTTGTTA
____________________________________________________________
consensus GAAGAGCCATCATAATCCTGATATTACAGCCTCAGGTGATGAATTTTATGTAGTTTGTTA
. : . : . : . : . : . :
rJMSF049N04+ CTATGTAGATGAGGCGTAAACATCATATGCTCTTTTTCAATTTACGTTAT
rJMFF038P24+ CTATGTAGATGAGGCGTAAACATCATATGCTCTTTTTCAATTTACGTTATGTGACTAGGC
rJMSF044G17+ CTATGTAGATGAGGCGTAAACATCATATGCTCTTTTTCAATTTACGTTATGTGACTAGGC
rJMSF052D03+ CTATGTAGATGAGGCGTAAACATCATATGCTCTTTTTCAATTTACGTTATGTGACTAGGC
____________________________________________________________
consensus CTATGTAGATGAGGCGTAAACATCATATGCTCTTTTTCAATTTACGTTATGTGACTAGGC
. : . : . : . : . : . :
rJMFF038P24+ GAGTCATT
rJMSF044G17+ GAGTCATTCTTGTGTTGTTTATGCCAAAATATATTAGCAACTGCTCTTCCAAACTGTGAT
rJMSF052D03+ GAGTCATTCTTGTGTTGTTTATGCCAAAATATATTAGCAACTGCTCTTCCAAACTGTGAT
____________________________________________________________
consensus GAGTCATTCTTGTGTTGTTTATGCCAAAATATATTAGCAACTGCTCTTCCAAACTGTGAT
. : . : . : . : . : . :
rJMSF044G17+ GGTTATTCATCACAGTGCCTCTGAAGTCTATACCCATAAGGCCATAACAGTTATGAATAA
rJMSF052D03+ GGTTATTCATCACAGTGCCTCTGAAGTCTATACCCATAAGGCCATAACAGTTATGAATAA
____________________________________________________________
consensus GGTTATTCATCACAGTGCCTCTGAAGTCTATACCCATAAGGCCATAACAGTTATGAATAA
. : . : . : . : . : . :
rJMSF044G17+ TATTCATTTAGGGTCTCTAGCTGATGTAA
rJMSF052D03+ TATTCATTTAGGGTCTCTAGCTGATGTAACTCATTCTTGTATGCTTTTACTATAAGGAGT
____________________________________________________________
consensus TATTCATTTAGGGTCTCTAGCTGATGTAACTCATTCTTGTATGCTTTTACTATAAGGAGT