Contig 010105:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF035D23Sequence699010105 (4)ref|XP_009614351.1|88.2PREDICTED: uncharacterized protein LOC104107292 [Nicotiana tomentosiformis]561010105 (4)ref|XP_009614351.1|71.6PREDICTED: uncharacterized protein LOC104107292 [Nicotiana tomentosiformis]
JMSF050I17Sequence678010105 (4)ref|XP_009614351.1|77.8PREDICTED: uncharacterized protein LOC104107292 [Nicotiana tomentosiformis]761010105 (4)ref|XP_009614351.1|78.6PREDICTED: uncharacterized protein LOC104107292 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF050I17-                                                           TAAACTTCAGTC
JMSF035D23-                                                      GCCGTTAAACTTCAGTC
                      ____________________________________________________________
consensus                                                        GCCGTTAAACTTCAGTC
 
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JMSF050I17-           CAATCCTCTCCCCTACGAACACGAAACCTCAGACCTTTCCCAGTCTCCCATGCCGGAAAC
JMSF035D23-           CAATCCTCTCCCCTACGAACACGAAACCTCAGACCTTTCCCAGTCTCCCATGCCGGAAAC
                      ____________________________________________________________
consensus             CAATCCTCTCCCCTACGAACACGAAACCTCAGACCTTTCCCAGTCTCCCATGCCGGAAAC
 
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JMSF050I17-           TAGACTTTGTGCATGAAAACCTCAGAGTTACTGTAAAGATGGCCGGCGGTATAAGCAAAC
JMSF035D23-           TAGACTTTGTGCATGAAAACCTCAGAGTTACTGTAAAGATGGCCGGCGGTATAAGCAAAC
rJMSF050I17+                               TCAGAGTTACTGTAAAGATGGCCGGCGGTATAAGCAAAC
                      ____________________________________________________________
consensus             TAGACTTTGTGCATGAAAACCTCAGAGTTACTGTAAAGATGGCCGGCGGTATAAGCAAAC
 
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JMSF050I17-           TTGGCACGGCCCTCGCCGTGGTCTTCGTTGTCTTATTGGCGGCGCTCTTCGCCCAGCTCG
JMSF035D23-           TTGGCACGGCCCTCGCCGTGGTCTTCGTTGTCTTATTGGCGGCGCTCTTCGCCCAGCTCG
rJMSF050I17+          TTGGCACGGCCCTCGCCGTGGTCTTCGTTGTCTTATTGGCGGCGCTTTTCGCCCAGCTCG
                      ____________________________________________________________
consensus             TTGGCACGGCCCTCGCCGTGGTCTTCGTTGTCTTATTGGCGGCGCTCTTCGCCCAGCTCG
 
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JMSF050I17-           TTTTCGTGCTCTGGCGCCGCCGCGCCTTCCGCCGTAGCATCACGCCGGAAAGTGGAAGCG
JMSF035D23-           TTTTCGTGCTCTGGCGCCGCCGCGCCTTCCGCCGTAGCATCACGCCGGAAAGTGGAAGCG
rJMSF050I17+          TTTTCGTGCTCTGGCGCCGCCGCGCCTTCCGCCGTAGCATCACGCCGGAAAGTGGAAGCG
                      ____________________________________________________________
consensus             TTTTCGTGCTCTGGCGCCGCCGCGCCTTCCGCCGTAGCATCACGCCGGAAAGTGGAAGCG
 
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JMSF050I17-           GCGACGTCGAGAGGCAATCTCAGTCATCCTCTTTCTTCTCCGCCCCCTCTAAGGAACTCT
JMSF035D23-           GCGACGTCGAGAGGCAATCTCAGTCATCCTCTTTCTTCTCCGCCCCCTCTAAGGAACTCT
rJMSF035D23+                                                TCCGCCCCCTCTAAGGAACTCT
rJMSF050I17+          GCGACGTCGAGAGGCAATCTCAGTCATCCTCTTTCTTCTCCGCCCCCTCTAAGGAACTCT
                      ____________________________________________________________
consensus             GCGACGTCGAGAGGCAATCTCAGTCATCCTCTTTCTTCTCCGCCCCCTCTAAGGAACTCT
 
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JMSF050I17-           TCTTGTTTCTCTGCCTCCGGACTGACACTCACCTCGCCAGAATCGAACCCAGCTCCACCC
JMSF035D23-           TCTTGTTTCTCTGCCTCCGGACTGACACTCACCTCGCCAGAATCGAACCCAGCTCCACCC
rJMSF035D23+          TCTTG-TTCTCTGCCTCCGGACTGACACTCACCTCGCCAGAATCGAACCCAGCTCCACCC
rJMSF050I17+          TCTTGTTTCTCTGCCTCCGGACTGACACTCACCTCGCCAGAATCGAACCCAGCTCCACCC
                      ____________________________________________________________
consensus             TCTTGTTTCTCTGCCTCCGGACTGACACTCACCTCGCCAGAATCGAACCCAGCTCCACCC
 
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JMSF050I17-           CGAGTCTCCACAACTCGGCCGGGTCAACCCCCGAGTCGCCGGAGATGGAGCTCGTCGACC
JMSF035D23-           CGAGTCTCCACAACTCGGCCGGGTCAACCCCCGAGTCGCCGGAGATGGAGCTCGTCGACC
rJMSF035D23+          CGAGTCTCCACAACTCGGCCGGGTCAACCCCCGAGTCGCCGGAGATGGAGCTCGTCGACC
rJMSF050I17+          CGAGTCTCCACAACTCGGCCGGGTCAACCCCCGAGTCGCCGGAGATGGAGCTCGTCGACC
                      ____________________________________________________________
consensus             CGAGTCTCCACAACTCGGCCGGGTCAACCCCCGAGTCGCCGGAGATGGAGCTCGTCGACC
 
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JMSF050I17-           TGTTGAAGCTCCAGGGAGGCCTTTATGGACCCTCCAAGATTCTCTTCACGATCAAGGAAG
JMSF035D23-           TGTTGAAGCTCCAGGGAGGCCTTTATGGACCCTCCAAGATTCTCTTCACGATCAAGGAAG
rJMSF035D23+          TGTTGAAGCTCCAGGGAGGCCTTTATGGACCCTCCAAGATTCTCTTCACGATCAAGGAAG
rJMSF050I17+          TGTTGAAGCTCCAGGGAGGCCTTTATGGACCCTCCAAGATTCTCTTCACGATCAAGGAAG
                      ____________________________________________________________
consensus             TGTTGAAGCTCCAGGGAGGCCTTTATGGACCCTCCAAGATTCTCTTCACGATCAAGGAAG
 
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JMSF050I17-           AAGAGAAAGAAGACTTAGAATCAGTTTGTTCTTCGGTGGAAAAGGGTCCCAGAAGGAAAA
JMSF035D23-           AAGAGAAAGAAGACTTAGAATCAGTTTGTTCTTCGGTGGAAAAGGGTCCCAGAAGGAAAA
rJMSF035D23+          AAGAGAAAGAAGACTTAGAATCAGTTTGTTCTTCGGTGGAAAAGGGTCCCAGAAGGAAAA
rJMSF050I17+          AAGAGAAAGAAGACTTAGAATCAGTTTGTTCTTCGGTGGAAAAGGGTCCCAGAAGGAAAA
                      ____________________________________________________________
consensus             AAGAGAAAGAAGACTTAGAATCAGTTTGTTCTTCGGTGGAAAAGGGTCCCAGAAGGAAAA
 
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JMSF050I17-           CGAATAGTAAACGGAGGAGCTTGGAGGATTTCTTCGAGATCGACGGCGACTCGCCGGTAA
JMSF035D23-           CGAATAGTAAACGGAGGAGCTTGGAGGATTTCTTCGAGATCGACGGCGACTCGCCGGTAA
rJMSF035D23+          CGAATAGTAAACGGAGGAGCTTGGAGGATTTCTTCGAGATCGACGGCGACTCGCCGGTAA
rJMSF050I17+          CGAATAGTAAACGGAGGAGCTTGGAGGATTTCTTCGAGATCGACGGCGACTCGCCGGTAA
                      ____________________________________________________________
consensus             CGAATAGTAAACGGAGGAGCTTGGAGGATTTCTTCGAGATCGACGGCGACTCGCCGGTAA
 
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JMSF050I17-           TATCACCGGANGTGGTGGCCACGGTGGCCGATGACTGCCATTTGGATATAGAAACGACGC
JMSF035D23-           TATCACCGGANGTGGTGGCCACGGTGGCCGATGACTGCCATTTGGATATAGAAACGACGC
rJMSF035D23+          TATCACCGGAGGTGGTGGCCACGGTGGCCGATGACTGCCATTTGGATATAGAAACGACGC
rJMSF050I17+          TATCACCGGAGGTGGTGGCCACGGTGGCCGATGACTGCCATTTGGATATAGAAACGACGC
                      ____________________________________________________________
consensus             TATCACCGGAGGTGGTGGCCACGGTGGCCGATGACTGCCATTTGGATATAGAAACGACGC
 
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JMSF050I17-           CTT                                                         
JMSF035D23-           CTTTCTCCACTCCATGTACTTC                                      
rJMSF035D23+          CTTTCTCCACTCCATGTACTTCCCCAACCTACTTCACTCCGTCAGCCTCGCCGGCTCGTG
rJMSF050I17+          CTTTCTCCACTCCATGTACTTCCCCAACCTACTTCACTCCGTCAGCCTCGCCGGCTCGTG
                      ____________________________________________________________
consensus             CTTTCTCCACTCCATGTACTTCCCCAACCTACTTCACTCCGTCAGCCTCGCCGGCTCGTG
 
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rJMSF035D23+          AAGAAGGTGACAGAGCTGTTACAATTGTGGAGGCTACTCTCGCCGGCGTATAAAATGCCG
rJMSF050I17+          AAGAAGGTGACAGAGCTGTTACAATTGTGGAGGCTACTCTCGCCGGCGTATAAAATGCCG
                      ____________________________________________________________
consensus             AAGAAGGTGACAGAGCTGTTACAATTGTGGAGGCTACTCTCGCCGGCGTATAAAATGCCG
 
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rJMSF035D23+          CCACCTCCGCCGGCCGGCGAGGTTTAGCACGGCATTGATCTGACTCC             
rJMSF050I17+          CCACCTCCGCCGGCCGGCGAGGTTTAGCACGGCATTGATCTGACTCCTAGTATATCACTA
                      ____________________________________________________________
consensus             CCACCTCCGCCGGCCGGCGAGGTTTAGCACGGCATTGATCTGACTCCTAGTATATCACTA