Contig 010103:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005E01Sequence478005226 (6)ref|XP_007044913.1|231TCP-1/cpn60 chaperonin family protein isoform 2 [Theobroma cacao] gb|EOY00745.1|598010103 (9)ref|XP_004239159.1|6e-107PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum]
JMFF040F17Sequence563005226 (6)ref|XP_004239159.1|4e-95PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum]746010103 (9)ref|XP_004239159.1|9e-122PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum]
JMFN011H23Sequence638010103 (9)ref|XP_004239159.1|1e-135PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum]
JMSF010F15Sequence248017771gb|EYU30595.1|2e-46hypothetical protein MIMGU_mgv1a004275mg [Erythranthe guttata]748010103 (9)ref|XP_004239159.1|9e-124PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum]
JMSF017A03Sequence646010103 (9)ref|XP_004171246.1|2e-71PREDICTED: T-complex protein 1 subunit epsilon-like [Cucumis sativus] gb|KGN623
JMSF038J20Sequence685005226 (6)ref|XP_010248739.1|4e-124PREDICTED: T-complex protein 1 subunit epsilon [Nelumbo nucifera]840010103 (9)ref|XP_004239159.1|2e-151PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum]
JMSF039J20Sequence687005226 (6)ref|XP_010248739.1|2e-123PREDICTED: T-complex protein 1 subunit epsilon [Nelumbo nucifera]666010103 (9)ref|XP_004239159.1|2e-110PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum]
JMSF048K12Sequence695005226 (6)ref|XP_010248739.1|5e-124PREDICTED: T-complex protein 1 subunit epsilon [Nelumbo nucifera]760010103 (9)ref|XP_004239159.1|3e-122PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum]
JMSF049O05Sequence663005226 (6)ref|XP_004239159.1|3e-108PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum]729010103 (9)ref|XP_004239159.1|1e-114PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum]

Alignment

This contig is upended


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JMFN011H23-                                                           CAGAAATGCAAG
                      ____________________________________________________________
consensus                                                             CAGAAATGCAAG
 
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JMFN011H23-           GATGTTGGTGCGACCTTGGTTATTTGCCAATGGGGATTTGATGATGAAGCAAACCACTTA
rJMSF038J20+                                            GATTTGATGATGAAGCAAACCACTTA
                      ____________________________________________________________
consensus             GATGTTGGTGCGACCTTGGTTATTTGCCAATGGGGATTTGATGATGAAGCAAACCACTTA
 
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JMFN011H23-           CTAATGCATAGAAATTTGCCAGCTGTTAGATGGGTTGGTGGTGTGGAGCTGGAGCTGATT
rJMSF038J20+          CTAATGCATAGAAATTTGCCAGCTGTTAGATGGGTTGGTGGTGTGGAGCTGGAGCTGATT
                      ____________________________________________________________
consensus             CTAATGCATAGAAATTTGCCAGCTGTTAGATGGGTTGGTGGTGTGGAGCTGGAGCTGATT
 
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JMFN011H23-           GCAATAGCCACTGGTGGGCGAATTGTGCCAAGATTTCAAGAGTTGACCCCGGAAAAACTT
rJMSF010F15+                             GAATTGTGCCAAGATTTCAAGAGTTGACCCCGGAAAAACTT
rJMSF038J20+          GCAATAGCCACTGGTGGGCGAATTGTGCCAAGATTTCAAGAGTTGACCCCGGAAAAACTT
rJMFF040F17+                                   TGCCAAGATTTCAAGAGTTGACCCCGGAAAAACTT
rJMSF048K12+                                 TGTGCCAAGATTTCAAGAGTTGACCCCGGAAAAACTT
rJMSF049O05+                                                           CGGAAAAACTT
                      ____________________________________________________________
consensus             GCAATAGCCACTGGTGGGCGAATTGTGCCAAGATTTCAAGAGTTGACCCCGGAAAAACTT
 
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JMFN011H23-           GGCAGGGCTGGGCTGGTTCGTGAGAAATCTTTTGGTACGACCAAGGATCGAATGATTTAT
rJMSF010F15+          GGCAGGGCTGGGCTGGTTCGTGAGAAATCTTTTGGTACGACCAAGGATCGAATGATTTAT
rJMSF038J20+          GGCAGGGCTGGGCTGGTTCGTGAGAAATCTTTTGGTACGACCAAGGATCGAATGATTTAT
rJMSF039J20+                  TGGGNTGGTTCGTGAGAAATCNTTTGGTACGACCAAGGATCGAATGATTTAT
rJMFF005E01+                          TTCGTGAGAAATCTTTTGGTACGACCAAGGATNGAATGATTTAT
rJMSF017A03+                          TTCGTGAGAAATCTTNTGGTACGACCAAGGATCGAANGATTNAT
rJMFF040F17+          GGCAGGGCTGGGCTGGTTCGTGAGAAATCTTTTGGTACGACCAAGGATCGAATGATTTAT
rJMSF048K12+          GGCAGGGCTGGGCTGGTTCGTGAGAAATCTTTTGGTACGACCAAGGATCGAATGATTTAT
rJMSF049O05+          GGCAGGGCTGGGCTGGTTCGTGAGAAATCTTTTGGTACGACCAAGGATAGAATGATTTAT
                      ____________________________________________________________
consensus             GGCAGGGCTGGGCTGGTTCGTGAGAAATCTTTTGGTACGACCAAGGATCGAATGATTTAT
 
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JMFN011H23-           ATTGAACATTGTGCAAATTCAAGGGCAGTGACTATATTCATACGTGGGGGTAACAAAATG
rJMSF010F15+          ATTGAACATTGTGCAAATTCAAGGGCAGTGACTATATTCATACGTGGGGGTAACAAAATG
rJMSF038J20+          ATTGAACATTGTGCAAATTCAAGGGCAGTGACTATATTCATACGTGGGGGTAACAAAATG
rJMSF039J20+          ATTGAACATTGTGCAAATTCAAGGGCAGTGACTATATTCATACGTGGGGGTAACAAAATG
rJMFF005E01+          ATNGAACATTGTGCAAATTCAAGGGCAGTGACTATATTCATACGTGGGGGTAACAAAATG
rJMSF017A03+          ATTGANCATTGTGCAAATTCAAGGGCAGTGACTATATTCATACGTGGGGGTAACAAAATG
rJMFF040F17+          ATTGAACATTGTGCAAATTCAAGGGCAGTGACTATATTCATACGTGGGGGTAACAAAATG
rJMSF048K12+          ATTGAACATTGTGCAAATTCAAGGGCAGTGACTATATTCATACGTGGGGGTAACAAAATG
rJMSF049O05+          ATTGAACATTGTGCAAATTCAAGGGCAGTGACTATATTCATACGTGGGGGTAACAAAATG
                      ____________________________________________________________
consensus             ATTGAACATTGTGCAAATTCAAGGGCAGTGACTATATTCATACGTGGGGGTAACAAAATG
 
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JMFN011H23-           ATGATAGAGGAGACAAAACGCAGCCTTCATGATGCTT-TGTGTGTTGCCAGAAATCTTAT
rJMSF010F15+          ATGATAGAGGAGACAAAACGCAGCCTTCATGATGCTT-TGTGTGTTGCCAGAAATCTTAT
rJMSF038J20+          ATGATAGAGGAGACAAAACGCAGCCTTCATGATGCTT-TGTGTGTTGCCAGAAATCTTAT
rJMSF039J20+          ATGATAGAGGAGACAAAACGCAGCCTTCATGATGCTT-TGTGTGTTGCCAGAAATCTTAT
rJMFF005E01+          ATGATAGAGGAGACAAAACGCAGCCTTCATGATGCTT-TGTGTGTTGCCAGAAATCTTAT
rJMSF017A03+          ATGATAGAGGAGACAAAACGCAGCATTCATGATGCTTGNGTGTGTNGCCAGAAATNTTAT
rJMFF040F17+          ATGATAGAGGAGACAAAACGCAGCCTTCATGATGCTT-TGTGTGTTGCCAGAAATCTTAT
rJMSF048K12+          ATGATAGAGGAGACAAAACGCAGCCTTCATGATGCTT-TGTGTGTTGCCAGAAATCTTAT
rJMSF049O05+          ATGATAGAGGAGACAAAACGCAGCCTTCATGATGCTT-TGTGTGTTGCCAGAAATCTTAT
                      ____________________________________________________________
consensus             ATGATAGAGGAGACAAAACGCAGCCTTCATGATGCTT-TGTGTGTTGCCAGAAATCTTAT
 
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JMFN011H23-           TCGGAACAACTCTATAGTATATGGTGGTGGCTCAGCTGAGATCTCTTCCTCAATTGCTGT
rJMSF010F15+          TCGGAACAACTCTATAGTATATGGTGGTGGCTCAGCTGAGATCTCTTCCTCAATTGCTGT
rJMSF038J20+          TCGGAACAACTCTATAGTATATGGTGGTGGCTCAGCTGAGATCTCTTCCTCAATTGCTGT
rJMSF039J20+          TCGGAACAACTCTATAGTATATGGTGGTGGCTCAGCTGAGATCTCTTCCTCAATTGCTGT
rJMFF005E01+          TCGGAACAACTCTATAGTATATGGTGGTGGCTCAGCTGAGATCTCTTCCTCAATTGCTGT
rJMSF017A03+          TCGGAACAACTCTNTAGTATATGGTGGTGGCTCAGCNGAGATNTCTTCCTCAATTGCCNT
rJMFF040F17+          TCGGAACAACTCTATAGTATATGGTGGTGGCTCAGCTGAGATCTCTTCCTCAATTGCTGT
rJMSF048K12+          TCGGAACAACTCTATAGTATATGGTGGTGGCTCAGCTGAGATCTCTTCCTCAATTGCTGT
rJMSF049O05+          TCGGAACAACTCTATAGTATATGGTGGTGGCTCAGCTGAGATCTCTTCCTCAATTGCTGT
                      ____________________________________________________________
consensus             TCGGAACAACTCTATAGTATATGGTGGTGGCTCAGCTGAGATCTCTTCCTCAATTGCTGT
 
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JMFN011H23-           GGAAGCTGCTGCTGATAAATATCCAGGTGTTGAGCAGTATGCAATCAGGGCATTTGCAGA
rJMSF010F15+          GGAAGCTGCTGCTGATAAATATCCAGGTGTTGAGCAGTATGCAATCAGGGCATTTGCAGA
rJMSF038J20+          GGAAGCTGCTGCTGATAAATATCCAGGTGTTGAGCAGTATGCAATCAGGGCATTTGCAGA
rJMSF039J20+          GGAAGCTGCTGCTGATAAATATCCAGGTGTTGAGCAGTATGCAATCAGGGCATTTGCAGA
rJMFF005E01+          GGAAGCTGCTGCTGATAAATATCCAGGTGTTGAGCAGTATGCAATCAGGGCATTTGCAGA
rJMSF017A03+          GGAAGCTGNTGCTGATAAATATCCAGNNGTTGAGCANTATGCAATCAGGGCATTTGCAGA
rJMFF040F17+          GGAAGCTGCTGCTGATAAATATCCAGGTGTTGAGCAGTATGCAATCAGGGCATTTGCAGA
rJMSF048K12+          GGAAGCTGCTGCTGATAAATATCCAGGTGTTGAGCAGTATGCAATCAGGGCATTTGCAGA
rJMSF049O05+          GGAAGCTGCTGCTGATAAATATCCAGGTGTTGAGCAGTATGCAATCAGGGCATTTGCAGA
                      ____________________________________________________________
consensus             GGAAGCTGCTGCTGATAAATATCCAGGTGTTGAGCAGTATGCAATCAGGGCATTTGCAGA
 
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JMFN011H23-           TGCTTTAGATGCTGTCCCCATGGCCCTTGCTGAGAATAGTGGCCTTCAACCCATTGAAAC
rJMSF010F15+          TGCTTTAGATGCTGTCCCCATGGCCCTTGCTGAGAATAGTGGCCTTCAACCCATTGAAAC
rJMSF038J20+          TGCTTTAGATGCTGTCCCCATGGCCCTTGCTGAGAATAGTGGCCTTCAACCCATTGAAAC
rJMSF039J20+          TGCTTTAGATGCTGTCCCCATGGCCCTTGCTGAGAATAGTGGCCTTCAACCCATTGAAAC
rJMFF005E01+          TGCTTTAGATGCTGTCCCCATGGCCCTTGCTGAGAATAGTGGCCTTCAACCCATTGAAAC
rJMSF017A03+          TGCTTTAGATGCTGTNCCCATGGCCCTTGNTGAGAATAGTGNCCTTCANCCCATTGAAAC
rJMFF040F17+          TGCTTTAGATGCTGTCCCCATGGCCCTTGCTGAGAATAGTGGCCTTCAACCCATTGAAAC
rJMSF048K12+          TGCTTTAGATGCTGTCCCCATGGCCCTTGCTGAGAATAGTGGCCTTCAACCCATTGAAAC
rJMSF049O05+          TGCTTTAGATGCTGTCCCCATGGCCCTTGCTGAGAATAGTGGCCTTCAACCCATTGAAAC
                      ____________________________________________________________
consensus             TGCTTTAGATGCTGTCCCCATGGCCCTTGCTGAGAATAGTGGCCTTCAACCCATTGAAAC
 
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JMFN011H23-           TCTATCTGCTGTTAAATCACAGCAAATCCAGGAAAATAATCCATGTTGCGGGATTGATTG
rJMSF010F15+          TCTATCTGCTGTTAAATCACAGCAAATCCAGGAAAATAATCCATGTTGCGGGATTGATTG
rJMSF038J20+          TCTATCTGCTGTTAAATCACAGCAAATCCAGGAAAATAATCCATGTTGCGGGATTGATTG
rJMSF039J20+          TCTATCTGCTGTTAAATCACAGCAAATCCAGGAAAATAATCCATGTTGCGGGATTGATTG
rJMFF005E01+          TCTATCTGCTGTTAAATCACAGCAAATCCAGGAAAATAATCCATGTTGCGGGATTGATTG
rJMSF017A03+          TCTATCTGCNGTTAAATCNCAGCAAATCCAGGAAGATAATCCATGNTGCGGGATNGATTG
rJMFF040F17+          TCTATCTGCTGTTAAATCACAGCAAATCCAGGAAAATAATCCATGTTGCGGGATTGATTG
rJMSF048K12+          TCTATCTGCTGTTAAATCACAGCAAATCCAGGAAAATAATCCATGTTGCGGGATTGATTG
rJMSF049O05+          TCTATCTGCTGTTAAATCACAGCAAATCCAGGAAAATAATCCATGTTGCGGGATTGATTG
                      ____________________________________________________________
consensus             TCTATCTGCTGTTAAATCACAGCAAATCCAGGAAAATAATCCATGTTGCGGGATTGATTG
 
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JMFN011H23-           NCATGACGTTGGCACAAATGACATGCG                                 
rJMSF010F15+          CAATGACGTTGGCACAAATGACATGCGAGAGCAAAATGTGTTTGAGACTTTGATTGGGAA
rJMSF038J20+          CAATGACGTTGGCACAAATGACATGCGAGAGCAAAATGTGTTTGAGACTTTGATTGGGAA
rJMSF039J20+          CAATGACGTTGGCACAAATGACATGCGAGAGCAAAATGTGTTTGAGACTTTGATTGGGAA
rJMFF005E01+          CAATGACGTTGGCACAAATGACATGCGAGAGCAAAATGTGTTTGAGACTTTGATTGGGAA
rJMSF017A03+          CAATGACGTTGGCACAAATGACATGCGAGAGCAAAATGTGTTTGAGACTTTGATTGGGAA
rJMFF040F17+          CAATGACGTTGGCACAAATGACATGCGAGAGCAAAATGTGTTTGAGACTTTGATTGGGAA
rJMSF048K12+          CAATGACGTTGGCACAAATGACATGCGAGAGCAAAATGTGTTTGAGACTTTGATTGGGAA
rJMSF049O05+          CAATGACGTTGGCACAAATGACATGCGAGAGCAAAATGTGTTTGAGACTTTGATTGGGAA
                      ____________________________________________________________
consensus             CAATGACGTTGGCACAAATGACATGCGAGAGCAAAATGTGTTTGAGACTTTGATTGGGAA
 
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rJMSF010F15+          GCAACAGCAGGTTTTACTCGCAACTCAAGTTGTTAAGATGATTCTAAAGATTGATGATGT
rJMSF038J20+          GCAACAGCAGGTTTTACTCGCAACTCAAGTTGTTAAGATGATTCTAAAGATTGATGATGT
rJMSF039J20+          GCAACAGCAGGTTTTACTCGCAACTCAAGTTGTTAAGATGATTCTAAAGATTGATGATGT
rJMFF005E01+          GCAACAGCAGGTTTTACTCGCAACTCAAGTTGTTAAGATGATTNTAAAGATTGATGATGT
rJMSF017A03+          GCAACAGCAGGTTTTACTCGCAACTCAAGTTGTTAAGATGATTCTAAAGATTGATGATGT
rJMFF040F17+          GCAACAGCAGGTTTTACTCGCAACTCAAGTTGTTAAGATGATTCTAAAGATTGATGATGT
rJMSF048K12+          GCAACAGCAGGTTTTACTCGCAACTCAAGTTGTTAAGATGATTCTAAAGATTGATGATGT
rJMSF049O05+          GCAACAGCAGGTTTTACTCGCAACTCAAGTTGTTAAGATGATTCTAAAGATTGATGATGT
                      ____________________________________________________________
consensus             GCAACAGCAGGTTTTACTCGCAACTCAAGTTGTTAAGATGATTCTAAAGATTGATGATGT
 
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rJMSF010F15+          TATCACGCCTGCGGATTATTAGTGAGTGATTAGGCAGGTCGAAGCATGTA-GAACAAGTG
rJMSF038J20+          TATCACGCCTGCGGATTATTAGTGAGTGATTAGGCAGGTCGAAGCATGTA-GAACAAGTG
rJMSF039J20+          TATCACGCCTGCGGATTATTAGTGAGTGATTAGGCAGGTCGAAGCATGTA-GAACAAGTG
rJMFF005E01+          TATCACGCCTGCGGATTATTAGTGAGTGATTAGGCAGGTNGAAGCATGTA-GAACAAGTG
rJMSF017A03+          TATCACGCCTGCGGATTATTAGTGAGTGATTAGGCAGGTCGAAGCATGTACGAACAAGTG
rJMFF040F17+          TATCACGCCTGCGGATTATTAGTGAGTGATTAGGCAGGTCGAAGCATGTA-GAACAAGTG
rJMSF048K12+          TATCACGCCTGCGGATTATTAGTGAGTGATTAGGCAGGTCGAAGCATGTA-GAACAAGTG
rJMSF049O05+          TATCACGCCTGCGGATTATTAGTGAGTGATTAGGCAGGTCGAAGCATGTA-GAACAAGTG
                      ____________________________________________________________
consensus             TATCACGCCTGCGGATTATTAGTGAGTGATTAGGCAGGTCGAAGCATGTA-GAACAAGTG
 
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rJMSF010F15+          GGTTTAACATTCAACTTTTGGTATGGTTAAGAAATTTTTGGTGGTTACGCATCTGAGTGT
rJMSF038J20+          GGTTTAACATTCAACTTTTGGTATGGTTAAGAAATTTTTGGTGGTTACGCATCTGAGTGT
rJMSF039J20+          GGTTTAACATTCAACTTTTGGTATGGTTAAGAAATTTTTGGTGGTTAC            
rJMFF005E01+          GGTTTAACATTCAACT                                            
rJMSF017A03+          GGTTTAACATTCAACNTTTGGTATGGTTANGAAATTTTTGGTGGTTACGCAT        
rJMFF040F17+          GGTTTAACATTCAACTTTTGGTATGGTTAAGAAATTTTTGGTGGTTACGCATCTGAGTGT
rJMSF048K12+          GGTTTAACATTCAACTTTTGGTATGGTTAAGAAATTTTTGGTGGTTACGCATCTGAGTGT
rJMSF049O05+          GGTTTAACATTCAACTTTTGGTATGGTTAAGAAATTTTTGGTGGTTACGCATCTGAGTGT
                      ____________________________________________________________
consensus             GGTTTAACATTCAACTTTTGGTATGGTTAAGAAATTTTTGGTGGTTACGCATCTGAGTGT
 
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rJMSF010F15+          TTGGAGTTTGTTATGTATTATTAC                                    
rJMSF038J20+          TTGGAGTTTGTTATGTATTATTACATTTGAAGAT                          
rJMFF040F17+          TTGGAGTTTGTTATGTATTATTACATTTGAAGATTGTTTCGT                  
rJMSF048K12+          TTGGAGTTTGTTATGTATTATTACATTTGAAGATTGTTTCGT                  
rJMSF049O05+          TTGGAGTTTGTTATGTATTATTACATTTGAAGATTGTTTCGTGATCATGAGTTGACATTA
                      ____________________________________________________________
consensus             TTGGAGTTTGTTATGTATTATTACATTTGAAGATTGTTTCGTGATCATGAGTTGACATTA