Contig 010102:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF049N19Sequence660010102 (2)ref|XP_006358752.1|1e-84PREDICTED: reticulon-like protein B16-like isoform X1 [Solanum tuberosum] ref|X681010102 (2)ref|XP_009594517.1|2e-78PREDICTED: reticulon-like protein B16 isoform X3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF049N19-                                              GGTAGAAGCGTTCCATAATCGCACT
                      ____________________________________________________________
consensus                                                GGTAGAAGCGTTCCATAATCGCACT
 
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JMSF049N19-           CGACTATAGATCGATTTTCAGCGAATTTTGATGGAGAATTCCGACGATCTATGTAGCATG
                      ____________________________________________________________
consensus             CGACTATAGATCGATTTTCAGCGAATTTTGATGGAGAATTCCGACGATCTATGTAGCATG
 
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JMSF049N19-           GAGGGCGACGGAGACGGCAGAAGAAACAGCAACAATGCTTCCCGTGCTCCGTCGACGTCG
                      ____________________________________________________________
consensus             GAGGGCGACGGAGACGGCAGAAGAAACAGCAACAATGCTTCCCGTGCTCCGTCGACGTCG
 
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JMSF049N19-           ACTTCTCCGGCGTCGAGCTCTCCGTACAAATTGTTCCGCCGGCAATCCTCGTTCCACCAG
                      ____________________________________________________________
consensus             ACTTCTCCGGCGTCGAGCTCTCCGTACAAATTGTTCCGCCGGCAATCCTCGTTCCACCAG
 
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JMSF049N19-           ATGATGGGAGGTGGTAAATCTGCTGATGTAATATTGTGGAGGTGGAGACGTGGTTCGTTT
                      ____________________________________________________________
consensus             ATGATGGGAGGTGGTAAATCTGCTGATGTAATATTGTGGAGGTGGAGACGTGGTTCGTTT
 
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JMSF049N19-           GGTATAATTGTCATAGCTACTGTTGCGTGGCTCTTGTTTGAGCACTCGGGGTTGCCTTTC
rJMSF049N19+                                                 GAGCACTCGGGGTTGCCTTTC
                      ____________________________________________________________
consensus             GGTATAATTGTCATAGCTACTGTTGCGTGGCTCTTGTTTGAGCACTCGGGGTTGCCTTTC
 
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JMSF049N19-           TTATCAGTTTGTTCCGACATCTTGCTGGTTTTAACCGTCCTACTTTTTCTTCGTGCCAAC
rJMSF049N19+          TTATCAGTTTGTTCCGACATCTTGCTGGTTTTAACCGTCCTACTTTTTCTTCGTGCCAAC
                      ____________________________________________________________
consensus             TTATCAGTTTGTTCCGACATCTTGCTGGTTTTAACCGTCCTACTTTTTCTTCGTGCCAAC
 
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JMSF049N19-           TATGCTGCCTACAAAAATAAACAACCTCAGACATTGCCTCAGCTAGTCTTGTCGGAAGAA
rJMSF049N19+          TATGCTGCCTACAAAAATAAACAACCTCAGACATTGCCTCAGCTAGTCTTGTCGGAAGAA
                      ____________________________________________________________
consensus             TATGCTGCCTACAAAAATAAACAACCTCAGACATTGCCTCAGCTAGTCTTGTCGGAAGAA
 
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JMSF049N19-           ATGGTCAACAATGCAGCTGCATCGTTTCGTGTCAAAATCAATTATATGTTGCTAATGGCT
rJMSF049N19+          ATGGTCAACAATGCAGCTGCATCGTTTCGTGTCAAAATCAATTATATGTTGCTAATGGCT
                      ____________________________________________________________
consensus             ATGGTCAACAATGCAGCTGCATCGTTTCGTGTCAAAATCAATTATATGTTGCTAATGGCT
 
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JMSF049N19-           CACGATATCACTCTCGGGAAAGATTTGAAACTTGTTTTCAAGGTTGTGATTGTTCTGTGG
rJMSF049N19+          CACGATATCACTCTCGGGAAAGATTTGAAACTTGTTTTCAAGGTTGTGATTGTTCTGTGG
                      ____________________________________________________________
consensus             CACGATATCACTCTCGGGAAAGATTTGAAACTTGTTTTCAAGGTTGTGATTGTTCTGTGG
 
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JMSF049N19-           CTTCTGTCTACCATTGGCAGCATGGTCTCTATTTTCACACTCACCTATATAGGGACTATT
rJMSF049N19+          CTTCTGTCTACCATTGGCAGCATGGTCTCTATTTTCACACTCACCTATATAGGGACTATT
                      ____________________________________________________________
consensus             CTTCTGTCTACCATTGGCAGCATGGTCTCTATTTTCACACTCACCTATATAGGGACTATT
 
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JMSF049N19-           ATGTTCATCACAGTGCCCGCGTTGTACAGCAGATT                         
rJMSF049N19+          ATGTTCATCACAGTGCCCGCGTTGTACAGCAGATTCGAAGCTCATGTTGATCGATGCGCT
                      ____________________________________________________________
consensus             ATGTTCATCACAGTGCCCGCGTTGTACAGCAGATTCGAAGCTCATGTTGATCGATGCGCT
 
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rJMSF049N19+          GGAAAGCTACACCAGCAGTTTTCGCGGCACTACAGAATAGTGGATGAGAGCATCGGCAGA
                      ____________________________________________________________
consensus             GGAAAGCTACACCAGCAGTTTTCGCGGCACTACAGAATAGTGGATGAGAGCATCGGCAGA
 
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rJMSF049N19+          TTACCTCGGAATGTAGCCAAGGACAAAGATCATTAAGGTTTTGTCCTATAAATCTCAGGT
                      ____________________________________________________________
consensus             TTACCTCGGAATGTAGCCAAGGACAAAGATCATTAAGGTTTTGTCCTATAAATCTCAGGT
 
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rJMSF049N19+          GCTAAACTTCATCACCTCTTAGCTCCATTTCTTCCCACATTTGACTAACGGCTTGAATCA
                      ____________________________________________________________
consensus             GCTAAACTTCATCACCTCTTAGCTCCATTTCTTCCCACATTTGACTAACGGCTTGAATCA
 
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rJMSF049N19+          AGTCTCGTTAACCCATGTATGTTTGAATCAATTCTCGTTAACTGAAGTAAGAGAGTTATA
                      ____________________________________________________________
consensus             AGTCTCGTTAACCCATGTATGTTTGAATCAATTCTCGTTAACTGAAGTAAGAGAGTTATA
 
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rJMSF049N19+          CTTCTGTGTTCCTTTGTTAGATTACGTAAGAGTTTTTTGTCAGTTTTGGTCCCTCAACTA
                      ____________________________________________________________
consensus             CTTCTGTGTTCCTTTGTTAGATTACGTAAGAGTTTTTTGTCAGTTTTGGTCCCTCAACTA