Contig 010100:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023J13Sequence268001894 (3)204010100 (3)ref|XP_006370478.1|5e-10hypothetical protein POPTR_0001s43080g [Populus trichocarpa] gb|ERP67047.1| hypo
JMSF041H14Sequence351010100 (3)ref|XP_006353035.1|3e-37PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
JMSF049K12Sequence597024294ref|XP_009796976.1|8e-115PREDICTED: subtilisin-like protease [Nicotiana sylvestris]690010100 (3)ref|XP_009804189.1|1e-98PREDICTED: subtilisin-like protease SBT5.3 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF049K12+                                        GACAACAGCATCTGTGTATGACAAAGGCGG
                      ____________________________________________________________
consensus                                           GACAACAGCATCTGTGTATGACAAAGGCGG
 
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rJMSF049K12+          AGGCCCCATACTGGCCCAGCGTGCGTATGCTAACCCCGACGTGAACCAATCTCCTGCAAC
                      ____________________________________________________________
consensus             AGGCCCCATACTGGCCCAGCGTGCGTATGCTAACCCCGACGTGAACCAATCTCCTGCAAC
 
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rJMSF049K12+          ACCTTTTGATATGGGAAGTAGTNTCGTGAATGCAACTGCGGCATTGGATCCAGGGNNTAT
                      ____________________________________________________________
consensus             ACCTTTTGATATGGGAAGTAGTNTCGTGAATGCAACTGCGGCATTGGATCCAGGGNNTAT
 
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rJMSF049K12+          TCTTGATTCAAGCTACAATGACTATATGTCATTTCTGTGTGGCATCAACGGATCCACCCC
                      ____________________________________________________________
consensus             TCTTGATTCAAGCTACAATGACTATATGTCATTTCTGTGTGGCATCAACGGATCCACCCC
 
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rJMSF041H14+                                                           GGCATGGACCT
rJMSF049K12+          TGTGGTTCTGAACTACACGAGCGAGAGCTGTGGCACCTCCACTTTGACTGGCATGGACCT
                      ____________________________________________________________
consensus             TGTGGTTCTGAACTACACGAGCGAGAGCTGTGGCACCTCCACTTTGACTGGCATGGACCT
 
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rJMSF041H14+          CAACATGCCCTCGATCACAATTNCCAGGNTGANCCNATCCCGAGTGGTTCAACGAACCCT
rJMSF023J13+                                                       GGTTCAACGAACCCT
rJMSF049K12+          CAACATGCCCTCGATCACAATTGCCAGGCTGAACCAATCCCGAGTGGTTCAACGAACCCT
                      ____________________________________________________________
consensus             CAACATGCCCTCGATCACAATTGCCAGGCTGAACCAATCCCGAGTGGTTCAACGAACCCT
 
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rJMSF041H14+          GACTAACGTGGGNGGCAGCGAATCATATGTNGTTGGGTGGAGTNCGCCNTACGGGGCTTC
rJMSF023J13+          GACNAATGNGGGTGGCAGNGAATCNTATGTTGTTGGNTGGAGTGCGCCTTNCGGGGTTTC
rJMSF049K12+          GACTAATGTGGGTGGCAGCGAATCATATGTTGTTGGGTGGAGTGCGCCTTACGGGGCTTC
                      ____________________________________________________________
consensus             GACTAATGTGGGTGGCAGCGAATCATATGTTGTTGGGTGGAGTGCGCCTTACGGGGCTTC
 
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rJMSF041H14+          GGNGAAGNTAACGCCAACGCGGTTTTGTGTAGGAAGCGGGGAGAGNTTGAACTTGNTCAT
rJMSF023J13+          GGNGAAGGTAANGCCAACGCGGTTTTGTGTNGGAAGCGGGGAGAGTTTGAACTTGNCCAT
rJMSF049K12+          GGTGAAGGTAACGCCAACGCGGTTTTGTGTAGGAAGCGGGGAGAGTTTGAACTTGACCAT
                      ____________________________________________________________
consensus             GGTGAAGGTAACGCCAACGCGGTTTTGTGTAGGAAGCGGGGAGAGTTTGAACTTGACCAT
 
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rJMSF041H14+          ATCGTTTAACGNGACTATGAACAACAGCANCCCGAGTTTTGGAAGGATCGGGTTGTTNCG
rJMSF023J13+          NTCGTTNAACGTGANTATGAACAACAGCAGCCCGAGTTNNGGAAGNATCNGGTTGTT   
rJMSF049K12+          ATCGTTTAACGCGACTATGAACAACAGCAGCCCGAGTTTTGGAAGGATCGGGTTGTTTGG
                      ____________________________________________________________
consensus             ATCGTTTAACGTGACTATGAACAACAGCAGCCCGAGTTTTGGAAGGATCGGGTTGTTTGG
 
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rJMSF041H14+          AAACCANGGCCATGTTGTAAACATTCCTTTGTCTGTCATTGNCAAAATTTCGTATAACAC
rJMSF049K12+          AAACCATGGCCATGTTGTAAACATTCCTTTGTCTGTCATTGTCAAAATTTCGTATAACAC
                      ____________________________________________________________
consensus             AAACCATGGCCATGTTGTAAACATTCCTTTGTCTGTCATTGTCAAAATTTCGTATAACAC
 
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rJMSF041H14+          AA                                                          
rJMSF049K12+          AAGCTAGTGCTTGATTGATACTTCTTCTCATCTTGTTATTTTGTATTTTTTGTATGCCCA
                      ____________________________________________________________
consensus             AAGCTAGTGCTTGATTGATACTTCTTCTCATCTTGTTATTTTGTATTTTTTGTATGCCCA
 
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rJMSF049K12+          AATTTTTTGAGTTATTAGCTCTGTAAAGATGTGTCCAAATGTAGATATAACTTTACTGCC
                      ____________________________________________________________
consensus             AATTTTTTGAGTTATTAGCTCTGTAAAGATGTGTCCAAATGTAGATATAACTTTACTGCC