Contig 010096:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF048L20Sequence683010096 (2)ref|XP_009768877.1|5e-81PREDICTED: uncharacterized protein LOC104219826 isoform X2 [Nicotiana sylvestri782010096 (2)ref|XP_006353362.1|2e-96PREDICTED: uncharacterized protein LOC102585395 isoform X3 [Solanum tuberosum]

Alignment

This contig is upended


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JMSF048L20-                                                          GATGGATTTCCCC
                      ____________________________________________________________
consensus                                                            GATGGATTTCCCC
 
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JMSF048L20-           ATGCACGGATAACCTATCGCCGGTGAGCACCAAGAGTTCCAGAAGTATTATCCATCACCT
                      ____________________________________________________________
consensus             ATGCACGGATAACCTATCGCCGGTGAGCACCAAGAGTTCCAGAAGTATTATCCATCACCT
 
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JMSF048L20-           GAGAAAGCTGCAAGCGAAGATGAGCAGCGGCTCCGTCTCACTCGCTTTGTTGGTGCCGTT
                      ____________________________________________________________
consensus             GAGAAAGCTGCAAGCGAAGATGAGCAGCGGCTCCGTCTCACTCGCTTTGTTGGTGCCGTT
 
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JMSF048L20-           CCTGTCGAGAGGCCGGACCAAATTTCAGCTTCCGCCGGAAATTTTCCGCCACGGGATCCG
                      ____________________________________________________________
consensus             CCTGTCGAGAGGCCGGACCAAATTTCAGCTTCCGCCGGAAATTTTCCGCCACGGGATCCG
 
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JMSF048L20-           GAAATTGTCCCGGAAGATTTGTTGTAACCGTACAGACAGCTCTTCTGGGAGCACTAAAAT
                      ____________________________________________________________
consensus             GAAATTGTCCCGGAAGATTTGTTGTAACCGTACAGACAGCTCTTCTGGGAGCACTAAAAT
 
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JMSF048L20-           TGAACAGCAACAGCTTAACCTCTCGGTTCTTCGTTTCACTCTCGGAATACCTGGATTGGA
rJMSF048L20+                                                                   GGA
                      ____________________________________________________________
consensus             TGAACAGCAACAGCTTAACCTCTCGGTTCTTCGTTTCACTCTCGGAATACCTGGATTGGA
 
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JMSF048L20-           TGAATCGTATTTACCGAGATATATAGGGTACACATTTGGTTCGTTGTTATTGTTGAATCA
rJMSF048L20+          TGNATCGTATTTACCGAGATATATAGGGTACACATTTGGTTCGNTGTTATTG-TGAATCA
                      ____________________________________________________________
consensus             TGAATCGTATTTACCGAGATATATAGGGTACACATTTGGTTCGTTGTTATTGTTGAATCA
 
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JMSF048L20-           CTTTGTAGGCTCGGATTCATCAACCGTCACTGCGGCCCAGTTGAGAACAGAGGTGTTAGG
rJMSF048L20+          CTTNGTAGGCTCGGATTCATCAACCGTCACTGCGGCCCAGTTGAGAACAGAGGTGTTAGG
                      ____________________________________________________________
consensus             CTTTGTAGGCTCGGATTCATCAACCGTCACTGCGGCCCAGTTGAGAACAGAGGTGTTAGG
 
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JMSF048L20-           CATTTTTCTTGCTGCCTTCTCTGTAGTAGTCCCCTACCTTGGGAGATTTCTGAAGGGGGC
rJMSF048L20+          CATTTTTCTTGCTGCCTTCTCTGTAGTAGTCCCCTACCTTGGGAGATTTCTGAAGGGGGC
                      ____________________________________________________________
consensus             CATTTTTCTTGCTGCCTTCTCTGTAGTAGTCCCCTACCTTGGGAGATTTCTGAAGGGGGC
 
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JMSF048L20-           TGTTCTAGTTAACGAAAGAAATGTTCCTGATGGTGCTGACCAAACCTTTGTCATATCACA
rJMSF048L20+          TGTTCTAGTTAACGAAAGAAATGTTCCTGATGGTGCTGACCAAACCTTTGTCATATCACA
                      ____________________________________________________________
consensus             TGTTCTAGTTAACGAAAGAAATGTTCCTGATGGTGCTGACCAAACCTTTGTCATATCACA
 
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JMSF048L20-           AAATGTTCCGGGTACTCTGAAGGAGGATCTGGCTTGGGGATCATATGTTCTATTGCGCAA
rJMSF048L20+          AAATGTTCCGGGTACTCTGAAGGAGGATCTGGCTTGGGGATCATATGTTCTATTGCGCAA
                      ____________________________________________________________
consensus             AAATGTTCCGGGTACTCTGAAGGAGGATCTGGCTTGGGGATCATATGTTCTATTGCGCAA
 
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JMSF048L20-           TACAAACACCATATCAGTGCTTATCTCAACTCAAGATGCACTGTGTGTGCGTGGCTACTG
rJMSF048L20+          TACAAACACCATATCAGTGCTTATCTCAACTCAAGATGCACTGTGTGTGCGTGGCTACTG
                      ____________________________________________________________
consensus             TACAAACACCATATCAGTGCTTATCTCAACTCAAGATGCACTGTGTGTGCGTGGCTACTG
 
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JMSF048L20-           GACAACTCCT                                                  
rJMSF048L20+          GACAACTCCTCAAGATGTAGCAAAAGCCGATGTCTGTAATTGGTTTGAGAAACAGATTCA
                      ____________________________________________________________
consensus             GACAACTCCTCAAGATGTAGCAAAAGCCGATGTCTGTAATTGGTTTGAGAAACAGATTCA
 
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rJMSF048L20+          GCAACTTGGTCTATTGAATTTGAAGGACACACTCTATTTTCCTCAAGCTACAGATTCTCA
                      ____________________________________________________________
consensus             GCAACTTGGTCTATTGAATTTGAAGGACACACTCTATTTTCCTCAAGCTACAGATTCTCA
 
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rJMSF048L20+          ACTCAAGGAGCTGCTTCCAAAGGGAACTCGTTCTCTCCTTGTACAGCCGCTGCTGGGGTC
                      ____________________________________________________________
consensus             ACTCAAGGAGCTGCTTCCAAAGGGAACTCGTTCTCTCCTTGTACAGCCGCTGCTGGGGTC
 
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rJMSF048L20+          TCCTGATCCAAGTTACAAGGAGGACACGCCAAAGAATGAGGGTTTTGTCCTGGTGGCTTC
                      ____________________________________________________________
consensus             TCCTGATCCAAGTTACAAGGAGGACACGCCAAAGAATGAGGGTTTTGTCCTGGTGGCTTC
 
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rJMSF048L20+          CGGCAACAGTTATGCATATGATAGTAAGGACATAGCCTGGATCAGAGTAGTTGCGGGAAA
                      ____________________________________________________________
consensus             CGGCAACAGTTATGCATATGATAGTAAGGACATAGCCTGGATCAGAGTAGTTGCGGGAAA
 
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rJMSF048L20+          ATTTAGAGGTAACTGCATTTTTTCAGATCTGTAATGCCCCGTAAATGCACCAAATCCTGT
                      ____________________________________________________________
consensus             ATTTAGAGGTAACTGCATTTTTTCAGATCTGTAATGCCCCGTAAATGCACCAAATCCTGT
 
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rJMSF048L20+          TTGCTTATTTTTACATATCTTCTTTGTATACCTGTCTTGTTGTCTTGTATGTGTATATAC
                      ____________________________________________________________
consensus             TTGCTTATTTTTACATATCTTCTTTGTATACCTGTCTTGTTGTCTTGTATGTGTATATAC