Contig 010090:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013G01Sequence252003605 (4)ref|XP_007133039.1|4e-11hypothetical protein PHAVU_011G146200g [Phaseolus vulgaris] gb|ESW05033.1| hypot700010090 (3)gb|KJB20616.1|1e-12hypothetical protein B456_003G156400 [Gossypium raimondii]
JMSF039N15Sequence649003605 (4)ref|XP_007133039.1|1e-10hypothetical protein PHAVU_011G146200g [Phaseolus vulgaris] gb|ESW05033.1| hypot841010090 (3)gb|KJB20616.1|2e-12hypothetical protein B456_003G156400 [Gossypium raimondii]
JMSF047O14Sequence695003605 (4)ref|XP_007133039.1|2e-10hypothetical protein PHAVU_011G146200g [Phaseolus vulgaris] gb|ESW05033.1| hypot716010090 (3)gb|KJB20616.1|3e-13hypothetical protein B456_003G156400 [Gossypium raimondii]

Alignment

This contig is upended


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rJMSF039N15+                                                                     T
                      ____________________________________________________________
consensus                                                                        T
 
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rJMSF039N15+          AATATTGAGCAGCATCAATAGCAGGAGCAGCAGTACCAGCTTTCCTGAAGAGGCCTCAGC
                      ____________________________________________________________
consensus             AATATTGAGCAGCATCAATAGCAGGAGCAGCAGTACCAGCTTTCCTGAAGAGGCCTCAGC
 
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rJMSF039N15+          AGCAAGAACTGAGTTGTTTGAAGAAGACAAAACCATATAAAAGAATGGGGAAAAAAATTG
                      ____________________________________________________________
consensus             AGCAAGAACTGAGTTGTTTGAAGAAGACAAAACCATATAAAAGAATGGGGAAAAAAATTG
 
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rJMSF039N15+          AATCCTTTTAGGCAAATACAATTTACATATATAATACAGTATTGCTTTTATTAAGGAGTC
rJMSF013G01+              CTTTTAGGCAAATACAATTTACATATATAATACAGTATTGCTTTTATTAAGGAGTC
rJMSF047O14+              CTTTTAGGCAAATACAATTTACATATATAATACAGTATTGCTTTTATTAAGGAGTC
                      ____________________________________________________________
consensus             AATCCTTTTAGGCAAATACAATTTACATATATAATACAGTATTGCTTTTATTAAGGAGTC
 
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rJMSF039N15+          CCAATACTAAACACATTCACAAATATTCTGAATATTTCAATTTTAAAAATCATTTGAAAT
rJMSF013G01+          CCAATACTAAACACATTCACAAATATTCTGAATATTTCAATTTTAAAAATCATTTGAAAT
rJMSF047O14+          CCAATACTAAACACATTCACAAATATTCTGAATATTTCAATTTTAAAAATCATTTGAAAT
                      ____________________________________________________________
consensus             CCAATACTAAACACATTCACAAATATTCTGAATATTTCAATTTTAAAAATCATTTGAAAT
 
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rJMSF039N15+          TTTGAATAATTTTATCTAAAATATTAAATTTGGAAAATGAAGGTAAAAAATGTTCTTGTT
rJMSF013G01+          TTTGAATAATTTTATCTAAAATATTAAATTTGGAAAATGAAGGTAAAAAATGTTCTTGTT
rJMSF047O14+          TTTGAATAATTTTATCTAAAATATTAAATTTGGAAAATGAAGGTAAAAAATGTTCTTGTT
                      ____________________________________________________________
consensus             TTTGAATAATTTTATCTAAAATATTAAATTTGGAAAATGAAGGTAAAAAATGTTCTTGTT
 
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rJMSF039N15+          GCCCAAAACACTTCACACCCCCATTTAGCTCTCTAACTGTTGTAAAGGCTTTATTGGGTT
rJMSF013G01+          GCCCAAAACACTTCACACCCCCATTTAGCTCTCTAACTGTTGTAAAGGCTTTATTGGGTT
rJMSF047O14+          GCCCAAAACACTTCACACCCCCATTTAGCTCTCTAACTGTTGTAAAGGCTTTATTGGGTT
                      ____________________________________________________________
consensus             GCCCAAAACACTTCACACCCCCATTTAGCTCTCTAACTGTTGTAAAGGCTTTATTGGGTT
 
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rJMSF039N15+          GTGTGGCCCATGCTAACTTGGCCAAACAGGTAAAAAGATGGTGGTTCACTAGTGGACTGA
rJMSF013G01+          GTGTGGCCCATGCTAACTTGGCCAAACAGGTAAAAAGATGGTGGTTCACTAGTGGACTGA
rJMSF047O14+          GTGTGGCCCATGCTAACTTGGCCAAACAGGTAAAAAGATGGTGGTTCACTAGTGGACTGA
                      ____________________________________________________________
consensus             GTGTGGCCCATGCTAACTTGGCCAAACAGGTAAAAAGATGGTGGTTCACTAGTGGACTGA
 
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rJMSF039N15+          AGATGCACTGGCCCGTTATCCTTCCACTGCAGAGAGGAGGAGGTCTTCGCTGCTCTGTGA
rJMSF013G01+          AGATGCACTGGCCCGTTATCCTTCCACTGCAGAGAGGAGGAGGTCTTCGCTGCTCTGTGA
rJMSF047O14+          AGATGCACTGGCCCGTTATCCTTCCACTGCAGAGAGGAGGAGGTCTTCGCTGCTCTGTGA
                      ____________________________________________________________
consensus             AGATGCACTGGCCCGTTATCCTTCCACTGCAGAGAGGAGGAGGTCTTCGCTGCTCTGTGA
 
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rJMSF039N15+          AGCCAGCCTCACGCGGTACCCTCCGATCTAAGGACAGAGAAGTCTCGACCTTCGTCGAGA
rJMSF013G01+          AGCCAGCCTCACGCGGTACCCTCCGATCTAAGGACAGAGAAGTCTCGACCTTCGTCGAGA
rJMSF047O14+          AGCCAGCCTCACGCGGTACCCTCCGATCTAAGGACAGAGAAGTCTCGACCTTCGTCGAGA
                      ____________________________________________________________
consensus             AGCCAGCCTCACGCGGTACCCTCCGATCTAAGGACAGAGAAGTCTCGACCTTCGTCGAGA
 
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rJMSF039N15+          CTCCTCCGTCAACTCACCACTTGAAATGGGCAAGCCAGAAGATAGCATACCAAGCCCGGC
rJMSF013G01+          CTCCTCCGTCAACTCACCACTTGAAATGGGCAAGCCAGAAGATAGCATACCAAGCCCGGC
rJMSF047O14+          CTCCTCCGTCAACTCACCACTTGAAATGGGCAAGCCAGAAGATAGCATACCAAGCCCGGC
                      ____________________________________________________________
consensus             CTCCTCCGTCAACTCACCACTTGAAATGGGCAAGCCAGAAGATAGCATACCAAGCCCGGC
 
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rJMSF039N15+          CGTCAGGGCAAGCCCAACTGTTCCACCATCTTAATGCTCCCACTCGGGTTAAAGGCTCAC
rJMSF013G01+          CGTCAGGGCAAGCCCAACTGTTCCACCATCTTAATGCTCCCACTCGGGTTAAAGGCTCAC
rJMSF047O14+          CGTCAGGGCAAGCCCAACTGTTCCACCATCTTAATGCTCCCACTCGGGTTAAAGGCTCAC
                      ____________________________________________________________
consensus             CGTCAGGGCAAGCCCAACTGTTCCACCATCTTAATGCTCCCACTCGGGTTAAAGGCTCAC
 
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rJMSF039N15+          GCTACCAAGCCCAGCCAGCAATTCTTCTAGCTAGGGACTTATTAAGAGAACATATTCTTC
rJMSF013G01+          GCTACCAAGCCCAGCCAGCAATTCTTCTAGCTAGGGACTTATTAAGAGAACATATTCTTC
rJMSF047O14+          GCTACCAAGCCCGGCCAGCAATTCTTCTAGCTAGGGACTTATTAAGAGAACATATTCTTC
                      ____________________________________________________________
consensus             GCTACCAAGCCCAGCCAGCAATTCTTCTAGCTAGGGACTTATTAAGAGAACATATTCTTC
 
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rJMSF039N15+          ATCTGGTTTCGATGTGGGATATTGTAAGGGTTGGTTTGGCTTTCATGGGGAAAAAATGGA
rJMSF013G01+          ATCTGGTTTCGATGTGGGATATTGTAAGGGTTGGTTTGGCTTTCATGGGGAAAAAATGGA
rJMSF047O14+          ATCTGGTTTCGATGTGGGATATTGTAAGGGTTGGTTTGGCTTTCATGGGGAAAAAATGGA
                      ____________________________________________________________
consensus             ATCTGGTTTCGATGTGGGATATTGTAAGGGTTGGTTTGGCTTTCATGGGGAAAAAATGGA
 
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rJMSF039N15+          GCAGACAACTATTGTGTA                                          
rJMSF013G01+          GCAGACAACTATTGTGTA                                          
rJMSF047O14+          GCAGACAACTATTGTGTACTCACGATTTTTGTGGTGTATCATATTGGTCACCAAAACTAG
                      ____________________________________________________________
consensus             GCAGACAACTATTGTGTACTCACGATTTTTGTGGTGTATCATATTGGTCACCAAAACTAG