Contig 010089:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020C23Sequence649011891 (3)ref|XP_009587400.1|2e-103PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform736010089 (2)gb|AAA19157.1|4e-56biotin-containing subunit of methylcrotonyl-CoA carboxylase, partial [Solanum l
JMSF047M20Sequence653011891 (3)ref|XP_009587400.1|3e-105PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial isoform714010089 (2)gb|AAA19157.1|4e-51biotin-containing subunit of methylcrotonyl-CoA carboxylase, partial [Solanum l

Alignment

This contig is upended


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rJMSF020C23+                                                     GATGATGGGAAATTCCT
                      ____________________________________________________________
consensus                                                        GATGATGGGAAATTCCT
 
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rJMSF020C23+          AGTTGAGACAGGAGAAAGCACTTCCCCCTGTTTGGAGGTCAAAGTAGAACAGTTAAGCAA
rJMSF047M20+                GACAGGAGAAAGCACTTCCCCCTGTTTGGAGGTCAAAGTAGAACAGTTAAGCAA
                      ____________________________________________________________
consensus             AGTTGAGACAGGAGAAAGCACTTCCCCCTGTTTGGAGGTCAAAGTAGAACAGTTAAGCAA
 
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rJMSF020C23+          TGAAAACTATATAGTTGAAGTAGGCGGTGTAAGACTAAATGTGAGCCTTGCCGTTTATTC
rJMSF047M20+          TGAAAACTATATAGTTGAAGTAGGCGGTGTAAGACTAAATGTGAGCCTTGCCGTTTATTC
                      ____________________________________________________________
consensus             TGAAAACTATATAGTTGAAGTAGGCGGTGTAAGACTAAATGTGAGCCTTGCCGTTTATTC
 
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rJMSF020C23+          CAAGGACCATTTTAAGCACATCCACATTTGGCATGGTCAATACCATCATCACTTCAAACA
rJMSF047M20+          CAAGGACCATTTTAAGCACATCCACATTTGGCATGGTCAATACCATCATCACTTCAAACA
                      ____________________________________________________________
consensus             CAAGGACCATTTTAAGCACATCCACATTTGGCATGGTCAATACCATCATCACTTCAAACA
 
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rJMSF020C23+          AAGTATAGGTGTTGAACTGTTTGATGATGATGATGAACTGCAACACAAACCTTCCAACGA
rJMSF047M20+          AAGTATAGGTGTTGAACTGTTTGATGATGATGATGAACTGCAACACAAACCTTCCAACGA
                      ____________________________________________________________
consensus             AAGTATAGGTGTTGAACTGTTTGATGATGATGATGAACTGCAACACAAACCTTCCAACGA
 
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rJMSF020C23+          GTCTGCATCTCATCCTCCTGGAACTGTAGTGGGCCCCATGGCTGGTCTAGTGGTTAAAGT
rJMSF047M20+          GTCTGCATCTCATCCTCCTGGAACTGTAGTGGGCCCCATGGCTGGTCTAGTGGTTAAAGT
                      ____________________________________________________________
consensus             GTCTGCATCTCATCCTCCTGGAACTGTAGTGGGCCCCATGGCTGGTCTAGTGGTTAAAGT
 
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rJMSF020C23+          TTTGGTGAAGGATGGGGAAAAAGTTCAGCAAGGCCAACCAGTTTTGGTATTAGAAGCAAT
rJMSF047M20+          TTTGGTGAAGGATGGGGAAAAAGTTCAGCAAGGCCAACCAGTTTTGGTATTAGAAGCAAT
                      ____________________________________________________________
consensus             TTTGGTGAAGGATGGGGAAAAAGTTCAGCAAGGCCAACCAGTTTTGGTATTAGAAGCAAT
 
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rJMSF020C23+          GAAGATGGAGCATGTCGTGAAAGCTCCAAATACTGGCTATGTTAGTGGCCTTAAGGTTGA
rJMSF047M20+          GAAGATGGAGCATGTCGTGAAAGCTCCAAATACTGGCTATGTTAGTGGCCTTAAGGTTGA
                      ____________________________________________________________
consensus             GAAGATGGAGCATGTCGTGAAAGCTCCAAATACTGGCTATGTTAGTGGCCTTAAGGTTGA
 
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rJMSF020C23+          AGTGGGCCAGCAGATTTACGATGGTGTTGCTCTCTTCAGTATCAAGGATTCTTAGATCAA
rJMSF047M20+          ATTGGGCCAGCAGATTTACGATGGTGTTGCTCTCTTCAGTATCAAGGATTCTTAGATCAA
                      ____________________________________________________________
consensus             ATTGGGCCAGCAGATTTACGATGGTGTTGCTCTCTTCAGTATCAAGGATTCTTAGATCAA
 
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rJMSF020C23+          TCGGCAATTACATTGAAGACAATCTGAACTGGACTAGAAACTACAAGCAGCTCTGGAGAG
rJMSF047M20+          TCGGCAATTACATTGAAGACAATCTGAACTGGACTAGAAACTACAAGCAGCTCTGGAGAG
                      ____________________________________________________________
consensus             TCGGCAATTACATTGAAGACAATCTGAACTGGACTAGAAACTACAAGCAGCTCTGGAGAG
 
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rJMSF020C23+          ATTGCAAAAGATCTCTGTATCACTTTATGCAATGATCTTGACAAGGAAATTGTACATTAG
rJMSF047M20+          ATTGCAAAAGATCTCTGTATCACTTTATGCAATGATCTTGACAAGGAAATTGTACATTAG
                      ____________________________________________________________
consensus             ATTGCAAAAGATCTCTGTATCACTTTATGCAATGATCTTGACAAGGAAATTGTACATTAG
 
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rJMSF020C23+          TTGAATAGGTCAATAAAAATTCACATATGGGGGTTTGGGATTTAGTGTAGTGTTAACGAA
rJMSF047M20+          TTGAATAGGTCAATAAAAATTCACATATGGGGGTTTGGGATTTAGTGTAGTGTTAACGAA
                      ____________________________________________________________
consensus             TTGAATAGGTCAATAAAAATTCACATATGGGGGTTTGGGATTTAGTGTAGTGTTAACGAA
 
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rJMSF020C23+          TTGAGCCACATTTTCAACTTATAAGGGGTTCAAATCCCATCTCCCGAATCCCCTCAAAT 
rJMSF047M20+          TTGAGCCACATTTTCAACTTATAAGGGGTTCAAATCCCATCTCCCGAATCCCCTCAAATG
                      ____________________________________________________________
consensus             TTGAGCCACATTTTCAACTTATAAGGGGTTCAAATCCCATCTCCCGAATCCCCTCAAATG